Wall clock time and date at job start Tue Mar 31 2020 13:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38227 * 119.61687 * 2 1 4 4 C 1.38627 * 119.16370 * 180.02562 * 3 2 1 5 5 C 1.50695 * 120.79398 * 180.02562 * 4 3 2 6 6 O 1.45198 * 109.47501 * 269.97894 * 5 4 3 7 7 C 1.34227 * 117.00392 * 179.97438 * 6 5 4 8 8 O 1.20830 * 119.99759 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.00403 * 179.97438 * 7 6 5 10 10 C 1.52998 * 109.47122 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.47177 * 55.00747 * 10 9 7 12 12 C 1.50698 * 109.47427 * 295.00218 * 10 9 7 13 13 H 1.08003 * 119.99868 * 325.83343 * 12 10 9 14 14 C 1.37871 * 119.99866 * 145.83392 * 12 10 9 15 15 N 1.31511 * 120.00333 * 6.11637 * 14 12 10 16 16 Si 1.86808 * 119.99833 * 186.11891 * 14 12 10 17 17 H 1.48497 * 109.47086 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47095 * 119.99950 * 16 14 12 19 19 H 1.48505 * 109.46843 * 240.00078 * 16 14 12 20 20 C 1.50703 * 109.46674 * 174.99970 * 10 9 7 21 21 C 1.38239 * 120.00074 * 63.47599 * 20 10 9 22 22 C 1.38225 * 120.00130 * 179.80629 * 21 20 10 23 23 C 1.38244 * 120.00099 * 0.39942 * 22 21 20 24 24 C 1.38235 * 119.99690 * 359.85188 * 23 22 21 25 25 C 1.38234 * 119.99909 * 243.74542 * 20 10 9 26 26 C 1.38677 * 118.42013 * 0.02562 * 4 3 2 27 27 C 1.38185 * 119.15864 * 359.97438 * 26 4 3 28 28 N 1.31855 * 119.62095 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.47104 * 269.97916 * 1 2 3 30 30 H 1.08999 * 109.47458 * 29.97762 * 1 2 3 31 31 H 1.09003 * 109.47035 * 149.97933 * 1 2 3 32 32 H 1.08006 * 120.41923 * 359.97438 * 3 2 1 33 33 H 1.09011 * 109.46905 * 29.97856 * 5 4 3 34 34 H 1.09000 * 109.47458 * 149.97398 * 5 4 3 35 35 H 1.09001 * 109.46977 * 300.00418 * 9 7 6 36 36 H 1.09002 * 109.46668 * 60.00325 * 9 7 6 37 37 H 0.96998 * 120.00544 * 179.97438 * 15 14 12 38 38 H 1.08006 * 119.99565 * 359.97438 * 21 20 10 39 39 H 1.08003 * 120.00729 * 180.23156 * 22 21 20 40 40 H 1.07994 * 120.00067 * 179.83681 * 23 22 21 41 41 H 1.08001 * 119.99649 * 179.97438 * 24 23 22 42 42 H 1.08003 * 120.00261 * 359.97438 * 25 20 10 43 43 H 1.07991 * 120.41941 * 180.02562 * 26 4 3 44 44 H 1.08001 * 119.61106 * 180.02562 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2017 0.0000 4 6 3.5763 1.1907 -0.0005 5 6 4.3580 2.4791 0.0000 6 8 4.6090 2.8936 -1.3687 7 6 5.2989 4.0316 -1.5441 8 8 5.6807 4.6604 -0.5855 9 6 5.5981 4.5245 -2.9364 10 6 6.3894 5.8314 -2.8557 11 1 7.2811 5.6793 -2.2476 12 6 5.5312 6.9006 -2.2301 13 1 4.4665 6.9130 -2.4111 14 6 6.1051 7.8628 -1.4266 15 7 7.4131 7.9211 -1.3023 16 14 5.0249 9.0838 -0.5145 17 1 3.5983 8.8078 -0.8207 18 1 5.2527 8.9510 0.9468 19 1 5.3651 10.4638 -0.9452 20 6 6.7944 6.2599 -4.2426 21 6 5.8274 6.5826 -5.1763 22 6 6.1989 6.9795 -6.4472 23 6 7.5373 7.0456 -6.7871 24 6 8.5041 6.7179 -5.8550 25 6 8.1326 6.3248 -4.5828 26 6 4.2267 -0.0341 -0.0016 27 6 3.4766 -1.1947 -0.0016 28 7 2.1587 -1.1462 -0.0005 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6507 2.1374 -0.0004 33 1 3.7856 3.2511 0.5143 34 1 5.3074 2.3279 0.5138 35 1 6.1852 3.7760 -3.4684 36 1 4.6630 4.6987 -3.4689 37 1 7.8169 8.5983 -0.7374 38 1 4.7817 6.5273 -4.9118 39 1 5.4436 7.2352 -7.1756 40 1 7.8274 7.3531 -7.7808 41 1 9.5496 6.7692 -6.1207 42 1 8.8880 6.0688 -3.8546 43 1 5.3056 -0.0803 -0.0016 44 1 3.9756 -2.1525 -0.0020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000856935405.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:34 Heat of formation + Delta-G solvation = -36.221070 kcal Electronic energy + Delta-G solvation = -26163.837262 eV Core-core repulsion = 22431.743695 eV Total energy + Delta-G solvation = -3732.093567 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.53055 -39.68971 -38.38211 -36.16616 -34.08763 -33.59127 -32.75413 -31.57062 -30.04642 -29.16684 -27.90822 -27.21925 -25.59802 -23.34645 -22.96587 -21.70599 -21.23926 -20.59802 -19.32134 -17.05872 -16.98082 -16.67882 -16.56124 -15.90975 -15.72272 -15.43859 -15.09986 -14.62111 -14.44432 -14.16010 -13.91961 -13.55972 -13.20542 -13.04223 -12.77064 -12.58729 -12.54379 -12.40323 -12.06897 -12.05030 -11.84177 -11.68855 -11.63010 -10.96152 -10.82323 -10.62648 -10.30314 -10.25700 -10.16117 -10.01533 -9.67011 -9.58047 -9.45133 -9.10326 -9.09511 -8.45843 -8.07780 -7.67045 -6.03218 -4.04337 0.93412 0.96273 2.25498 2.29690 3.06327 3.17835 3.31214 3.38759 3.40596 3.73419 4.12233 4.42465 4.43853 4.53543 4.70743 4.89604 4.93978 5.17254 5.30096 5.32260 5.33237 5.37414 5.43492 5.58332 5.63807 5.69216 5.73086 5.79989 5.81036 5.89784 6.01337 6.06438 6.16436 6.23042 6.37208 6.45740 6.52509 6.65128 6.85017 6.94314 7.06819 7.27927 7.36084 7.46022 7.76718 7.80017 7.88683 7.96754 8.26237 8.59641 8.96325 9.58988 11.06683 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012311 B = 0.003055 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.842847 B = 9163.192662 C =10331.110405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.123 3.877 3 C -0.150 4.150 4 C -0.038 4.038 5 C 0.104 3.896 6 O -0.368 6.368 7 C 0.457 3.543 8 O -0.465 6.465 9 C -0.094 4.094 10 C 0.076 3.924 11 H 0.074 0.926 12 C -0.501 4.501 13 H 0.053 0.947 14 C 0.080 3.920 15 N -0.879 5.879 16 Si 0.887 3.113 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.286 1.286 20 C -0.022 4.022 21 C -0.114 4.114 22 C -0.131 4.131 23 C -0.153 4.153 24 C -0.128 4.128 25 C -0.117 4.117 26 C -0.158 4.158 27 C 0.100 3.900 28 N -0.484 5.484 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.137 0.863 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.260 0.740 38 H 0.114 0.886 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.114 0.886 43 H 0.137 0.863 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.651 -13.475 -1.236 15.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.015 4.015 3 C -0.170 4.170 4 C -0.046 4.046 5 C 0.030 3.970 6 O -0.287 6.287 7 C 0.298 3.702 8 O -0.347 6.347 9 C -0.132 4.132 10 C 0.057 3.943 11 H 0.092 0.908 12 C -0.539 4.539 13 H 0.072 0.928 14 C -0.124 4.124 15 N -0.515 5.515 16 Si 0.715 3.285 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.212 1.212 20 C -0.023 4.023 21 C -0.132 4.132 22 C -0.149 4.149 23 C -0.172 4.172 24 C -0.146 4.146 25 C -0.136 4.136 26 C -0.178 4.178 27 C -0.057 4.057 28 N -0.195 5.195 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.155 0.845 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.070 0.930 38 H 0.132 0.868 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.132 0.868 43 H 0.155 0.845 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -6.855 -13.936 -0.796 15.551 hybrid contribution 0.107 1.781 0.698 1.916 sum -6.749 -12.155 -0.099 13.903 Atomic orbital electron populations 1.20714 0.88674 1.03601 1.03083 1.21294 0.97110 0.88122 0.94951 1.21953 0.94089 0.99701 1.01221 1.20048 0.93751 0.94523 0.96298 1.21609 0.99618 0.92683 0.83100 1.86596 1.70028 1.42575 1.29505 1.24067 0.74929 0.77222 0.94010 1.90730 1.47313 1.54191 1.42445 1.21642 1.02733 0.99921 0.88869 1.17919 0.97457 0.89528 0.89357 0.90794 1.20761 0.93073 1.11302 1.28719 0.92836 1.24818 0.94723 0.97155 0.95692 1.69913 1.09157 1.34187 1.38283 0.86622 0.80915 0.80928 0.79996 1.19861 1.20952 1.21197 1.20602 0.92179 0.93854 0.95665 1.20957 0.99546 1.00037 0.92710 1.20981 0.95603 1.01529 0.96808 1.20817 0.93422 1.04092 0.98838 1.20986 0.98304 1.00997 0.94309 1.21078 0.96379 1.00725 0.95368 1.22107 1.01790 0.92702 1.01168 1.22718 0.89332 0.98315 0.95324 1.67494 1.10104 1.29450 1.12411 0.90413 0.90536 0.90445 0.84472 0.90136 0.90215 0.90334 0.89282 0.93018 0.86796 0.87568 0.87729 0.87560 0.86775 0.84463 0.82491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.84 10.17 36.01 0.37 -0.47 16 2 C 0.12 1.38 6.78 -82.59 -0.56 0.82 16 3 C -0.15 -1.75 9.45 -39.44 -0.37 -2.12 16 4 C -0.04 -0.48 5.56 -104.32 -0.58 -1.06 16 5 C 0.10 1.49 5.64 36.00 0.20 1.69 16 6 O -0.37 -6.24 10.20 -39.25 -0.40 -6.64 16 7 C 0.46 9.11 7.71 36.01 0.28 9.38 16 8 O -0.46 -10.97 14.74 -18.75 -0.28 -11.25 16 9 C -0.09 -1.80 5.06 -27.88 -0.14 -1.94 16 10 C 0.08 1.76 1.67 -92.92 -0.16 1.61 16 11 H 0.07 1.94 6.97 -51.93 -0.36 1.58 16 12 C -0.50 -13.04 6.37 -34.44 -0.22 -13.26 16 13 H 0.05 1.39 7.82 -52.48 -0.41 0.98 16 14 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 15 N -0.88 -25.08 12.87 55.43 0.71 -24.37 16 16 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 17 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 18 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 C -0.02 -0.48 4.77 -104.62 -0.50 -0.98 16 21 C -0.11 -2.26 8.86 -39.59 -0.35 -2.61 16 22 C -0.13 -2.30 10.05 -39.58 -0.40 -2.70 16 23 C -0.15 -2.62 10.05 -39.58 -0.40 -3.01 16 24 C -0.13 -2.30 10.05 -39.58 -0.40 -2.70 16 25 C -0.12 -2.41 9.67 -39.58 -0.38 -2.80 16 26 C -0.16 -1.73 9.82 -39.44 -0.39 -2.12 16 27 C 0.10 1.06 11.18 -17.55 -0.20 0.86 16 28 N -0.48 -5.85 10.27 -9.47 -0.10 -5.95 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.52 8.08 -51.93 -0.42 0.10 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.14 1.40 8.06 -52.48 -0.42 0.98 16 33 H 0.08 1.15 8.10 -51.92 -0.42 0.73 16 34 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 35 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.09 1.59 7.77 -51.93 -0.40 1.19 16 37 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 38 H 0.11 2.16 7.76 -52.48 -0.41 1.75 16 39 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 40 H 0.10 1.48 8.06 -52.49 -0.42 1.06 16 41 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 42 H 0.11 2.35 7.95 -52.48 -0.42 1.94 16 43 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 44 H 0.16 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 380.88 15.07 5.74 5.74 Total: -1.00 -31.64 380.88 -9.83 -41.47 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -6.20 Total: 3.72 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: -4.29 Total: -19.32 kcal Atomic # 7 Polarization: -30.93 SS G_CDS: 0.62 Total: -30.31 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.68 Total: -17.90 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.64 -9.83 -41.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856935405.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.251 kcal (2) G-P(sol) polarization free energy of solvation -31.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds