Wall clock time and date at job start Tue Mar 31 2020 13:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38227 * 119.61687 * 2 1 4 4 C 1.38627 * 119.16370 * 180.02562 * 3 2 1 5 5 C 1.50695 * 120.79398 * 180.02562 * 4 3 2 6 6 O 1.45198 * 109.47501 * 269.97894 * 5 4 3 7 7 C 1.34227 * 117.00392 * 179.97438 * 6 5 4 8 8 O 1.20830 * 119.99759 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.00403 * 179.97438 * 7 6 5 10 10 C 1.52998 * 109.47122 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.47177 * 55.00747 * 10 9 7 12 12 C 1.50698 * 109.47427 * 295.00218 * 10 9 7 13 13 H 1.08003 * 119.99868 * 325.83343 * 12 10 9 14 14 C 1.37871 * 119.99866 * 145.83392 * 12 10 9 15 15 N 1.31511 * 120.00333 * 6.11637 * 14 12 10 16 16 Si 1.86808 * 119.99833 * 186.11891 * 14 12 10 17 17 H 1.48497 * 109.47086 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47095 * 119.99950 * 16 14 12 19 19 H 1.48505 * 109.46843 * 240.00078 * 16 14 12 20 20 C 1.50703 * 109.46674 * 174.99970 * 10 9 7 21 21 C 1.38239 * 120.00074 * 63.47599 * 20 10 9 22 22 C 1.38225 * 120.00130 * 179.80629 * 21 20 10 23 23 C 1.38244 * 120.00099 * 0.39942 * 22 21 20 24 24 C 1.38235 * 119.99690 * 359.85188 * 23 22 21 25 25 C 1.38234 * 119.99909 * 243.74542 * 20 10 9 26 26 C 1.38677 * 118.42013 * 0.02562 * 4 3 2 27 27 C 1.38185 * 119.15864 * 359.97438 * 26 4 3 28 28 N 1.31855 * 119.62095 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.47104 * 269.97916 * 1 2 3 30 30 H 1.08999 * 109.47458 * 29.97762 * 1 2 3 31 31 H 1.09003 * 109.47035 * 149.97933 * 1 2 3 32 32 H 1.08006 * 120.41923 * 359.97438 * 3 2 1 33 33 H 1.09011 * 109.46905 * 29.97856 * 5 4 3 34 34 H 1.09000 * 109.47458 * 149.97398 * 5 4 3 35 35 H 1.09001 * 109.46977 * 300.00418 * 9 7 6 36 36 H 1.09002 * 109.46668 * 60.00325 * 9 7 6 37 37 H 0.96998 * 120.00544 * 179.97438 * 15 14 12 38 38 H 1.08006 * 119.99565 * 359.97438 * 21 20 10 39 39 H 1.08003 * 120.00729 * 180.23156 * 22 21 20 40 40 H 1.07994 * 120.00067 * 179.83681 * 23 22 21 41 41 H 1.08001 * 119.99649 * 179.97438 * 24 23 22 42 42 H 1.08003 * 120.00261 * 359.97438 * 25 20 10 43 43 H 1.07991 * 120.41941 * 180.02562 * 26 4 3 44 44 H 1.08001 * 119.61106 * 180.02562 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2017 0.0000 4 6 3.5763 1.1907 -0.0005 5 6 4.3580 2.4791 0.0000 6 8 4.6090 2.8936 -1.3687 7 6 5.2989 4.0316 -1.5441 8 8 5.6807 4.6604 -0.5855 9 6 5.5981 4.5245 -2.9364 10 6 6.3894 5.8314 -2.8557 11 1 7.2811 5.6793 -2.2476 12 6 5.5312 6.9006 -2.2301 13 1 4.4665 6.9130 -2.4111 14 6 6.1051 7.8628 -1.4266 15 7 7.4131 7.9211 -1.3023 16 14 5.0249 9.0838 -0.5145 17 1 3.5983 8.8078 -0.8207 18 1 5.2527 8.9510 0.9468 19 1 5.3651 10.4638 -0.9452 20 6 6.7944 6.2599 -4.2426 21 6 5.8274 6.5826 -5.1763 22 6 6.1989 6.9795 -6.4472 23 6 7.5373 7.0456 -6.7871 24 6 8.5041 6.7179 -5.8550 25 6 8.1326 6.3248 -4.5828 26 6 4.2267 -0.0341 -0.0016 27 6 3.4766 -1.1947 -0.0016 28 7 2.1587 -1.1462 -0.0005 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6507 2.1374 -0.0004 33 1 3.7856 3.2511 0.5143 34 1 5.3074 2.3279 0.5138 35 1 6.1852 3.7760 -3.4684 36 1 4.6630 4.6987 -3.4689 37 1 7.8169 8.5983 -0.7374 38 1 4.7817 6.5273 -4.9118 39 1 5.4436 7.2352 -7.1756 40 1 7.8274 7.3531 -7.7808 41 1 9.5496 6.7692 -6.1207 42 1 8.8880 6.0688 -3.8546 43 1 5.3056 -0.0803 -0.0016 44 1 3.9756 -2.1525 -0.0020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000856935405.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:33 Heat of formation + Delta-G solvation = -51.301745 kcal Electronic energy + Delta-G solvation = -26164.491209 eV Core-core repulsion = 22431.743695 eV Total energy + Delta-G solvation = -3732.747514 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.61241 -41.03211 -39.86981 -37.65256 -35.84133 -34.57960 -33.59457 -33.45612 -31.50130 -30.64265 -28.78674 -28.36958 -27.34510 -24.75082 -24.10596 -23.17030 -22.34587 -21.91965 -20.96851 -18.65949 -18.50612 -17.90340 -17.79733 -17.28433 -16.86988 -16.79404 -16.43436 -16.13247 -15.60103 -15.50162 -15.39209 -14.74574 -14.40071 -14.34542 -14.12380 -13.98332 -13.65193 -13.56445 -13.49556 -13.26008 -13.16209 -12.99037 -12.88995 -12.66795 -12.56800 -12.46766 -11.83728 -11.73912 -11.66244 -11.43204 -11.30520 -10.98455 -10.76055 -10.54143 -10.47296 -9.91827 -9.53768 -9.21408 -8.08344 -6.12319 -0.00491 0.11445 0.78388 0.82866 1.35247 1.38642 1.46141 1.47193 1.88601 2.43700 2.80063 3.16952 3.32712 3.37058 3.42090 3.62967 3.98702 4.09302 4.13999 4.19885 4.23738 4.35070 4.36319 4.39747 4.51292 4.55387 4.56169 4.61655 4.70984 4.76704 4.79000 4.89267 4.95645 5.04357 5.12718 5.18676 5.26065 5.36175 5.45948 5.55147 5.59388 5.70750 5.75750 5.84324 5.93695 6.13355 6.37085 6.45783 6.95464 6.95608 7.03807 7.52024 9.01193 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012311 B = 0.003055 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.842847 B = 9163.192662 C =10331.110405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.115 3.885 3 C -0.159 4.159 4 C -0.054 4.054 5 C 0.103 3.897 6 O -0.361 6.361 7 C 0.463 3.537 8 O -0.510 6.510 9 C -0.090 4.090 10 C 0.080 3.920 11 H 0.031 0.969 12 C -0.495 4.495 13 H 0.051 0.949 14 C 0.028 3.972 15 N -0.914 5.914 16 Si 0.934 3.066 17 H -0.265 1.265 18 H -0.290 1.290 19 H -0.283 1.283 20 C -0.047 4.047 21 C -0.127 4.127 22 C -0.127 4.127 23 C -0.147 4.147 24 C -0.129 4.129 25 C -0.141 4.141 26 C -0.161 4.161 27 C 0.099 3.901 28 N -0.502 5.502 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.147 0.853 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.255 0.745 38 H 0.117 0.883 39 H 0.140 0.860 40 H 0.143 0.857 41 H 0.132 0.868 42 H 0.097 0.903 43 H 0.153 0.847 44 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.953 -14.252 -3.303 16.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.022 4.022 3 C -0.179 4.179 4 C -0.062 4.062 5 C 0.029 3.971 6 O -0.279 6.279 7 C 0.306 3.694 8 O -0.396 6.396 9 C -0.128 4.128 10 C 0.061 3.939 11 H 0.050 0.950 12 C -0.533 4.533 13 H 0.069 0.931 14 C -0.171 4.171 15 N -0.553 5.553 16 Si 0.761 3.239 17 H -0.189 1.189 18 H -0.217 1.217 19 H -0.209 1.209 20 C -0.047 4.047 21 C -0.145 4.145 22 C -0.145 4.145 23 C -0.164 4.164 24 C -0.146 4.146 25 C -0.159 4.159 26 C -0.181 4.181 27 C -0.057 4.057 28 N -0.213 5.213 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.098 0.902 32 H 0.164 0.836 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.064 0.936 38 H 0.135 0.865 39 H 0.158 0.842 40 H 0.161 0.839 41 H 0.150 0.850 42 H 0.115 0.885 43 H 0.171 0.829 44 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -8.191 -14.737 -2.883 17.106 hybrid contribution 0.499 1.896 1.272 2.337 sum -7.693 -12.841 -1.611 15.056 Atomic orbital electron populations 1.20795 0.86638 1.04371 1.04088 1.21754 0.98578 0.87710 0.94205 1.22126 0.93905 1.00502 1.01352 1.20001 0.94154 0.94016 0.98012 1.21769 1.00107 0.93661 0.81528 1.86562 1.68964 1.41031 1.31343 1.24159 0.74159 0.77327 0.93732 1.90719 1.49274 1.55806 1.43785 1.21551 1.03350 0.98830 0.89066 1.17700 0.95719 0.90598 0.89866 0.95031 1.21050 0.93154 1.11189 1.27927 0.93106 1.25464 0.95593 0.99079 0.97007 1.70041 1.10425 1.35162 1.39646 0.85873 0.80061 0.79389 0.78540 1.18882 1.21670 1.20862 1.20450 0.93176 0.95772 0.95320 1.21064 0.99256 1.00672 0.93552 1.21374 0.96907 0.99883 0.96325 1.21280 0.92875 1.02152 1.00126 1.21293 1.00213 0.99898 0.93242 1.21112 0.95838 1.02356 0.96629 1.22326 1.02751 0.92310 1.00686 1.23217 0.89036 0.99385 0.94112 1.67580 1.10878 1.29874 1.12920 0.89197 0.89246 0.90183 0.83571 0.90532 0.89995 0.87835 0.87521 0.93562 0.86516 0.84177 0.83907 0.84982 0.88497 0.82908 0.79566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.48 10.17 71.24 0.72 -0.75 16 2 C 0.11 2.44 6.78 42.55 0.29 2.73 16 3 C -0.16 -3.58 9.45 22.36 0.21 -3.37 16 4 C -0.05 -1.31 5.56 -19.67 -0.11 -1.42 16 5 C 0.10 2.97 5.64 71.23 0.40 3.37 16 6 O -0.36 -12.22 10.20 -51.39 -0.52 -12.74 16 7 C 0.46 18.80 7.71 71.24 0.55 19.35 16 8 O -0.51 -25.05 14.74 21.95 0.32 -24.72 16 9 C -0.09 -3.49 5.06 29.85 0.15 -3.34 16 10 C 0.08 3.81 1.67 -12.29 -0.02 3.79 16 11 H 0.03 1.76 6.97 -2.39 -0.02 1.74 16 12 C -0.50 -26.35 6.37 25.60 0.16 -26.19 16 13 H 0.05 2.66 7.82 -2.91 -0.02 2.64 16 14 C 0.03 1.58 5.45 84.65 0.46 2.04 16 15 N -0.91 -54.37 12.87 21.44 0.28 -54.10 16 16 Si 0.93 45.24 29.54 68.60 2.03 47.27 16 17 H -0.26 -12.25 7.11 99.48 0.71 -11.54 16 18 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 19 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 20 C -0.05 -2.03 4.77 -19.86 -0.09 -2.12 16 21 C -0.13 -4.85 8.86 22.27 0.20 -4.65 16 22 C -0.13 -4.04 10.05 22.27 0.22 -3.82 16 23 C -0.15 -4.45 10.05 22.27 0.22 -4.22 16 24 C -0.13 -4.38 10.05 22.27 0.22 -4.16 16 25 C -0.14 -5.87 9.67 22.27 0.22 -5.66 16 26 C -0.16 -3.35 9.82 22.36 0.22 -3.13 16 27 C 0.10 1.92 11.18 84.67 0.95 2.87 16 28 N -0.50 -11.37 10.27 -183.89 -1.89 -13.26 16 29 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.09 1.05 8.08 -2.39 -0.02 1.03 16 31 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 33 H 0.08 2.25 8.10 -2.38 -0.02 2.23 16 34 H 0.08 2.31 8.10 -2.39 -0.02 2.29 16 35 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 36 H 0.11 3.73 7.77 -2.39 -0.02 3.71 16 37 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 38 H 0.12 4.27 7.76 -2.91 -0.02 4.25 16 39 H 0.14 3.49 8.06 -2.91 -0.02 3.46 16 40 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 41 H 0.13 3.73 8.06 -2.91 -0.02 3.71 16 42 H 0.10 4.23 7.95 -2.91 -0.02 4.21 16 43 H 0.15 2.59 8.06 -2.92 -0.02 2.57 16 44 H 0.19 2.33 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -70.41 380.88 6.18 -64.23 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: 0.99 Total: 22.01 kcal Atomic # 6 Polarization: -33.66 SS G_CDS: 4.98 Total: -28.68 kcal Atomic # 7 Polarization: -65.74 SS G_CDS: -1.61 Total: -67.36 kcal Atomic # 8 Polarization: -37.27 SS G_CDS: -0.20 Total: -37.47 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -70.41 6.18 -64.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856935405.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.930 kcal (2) G-P(sol) polarization free energy of solvation -70.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds