Wall clock time and date at job start Tue Mar 31 2020 13:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38221 * 119.61937 * 2 1 4 4 C 1.38634 * 119.15829 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.78553 * 180.02562 * 4 3 2 6 6 O 1.45191 * 109.47192 * 269.97839 * 5 4 3 7 7 C 1.34238 * 116.99904 * 180.02562 * 6 5 4 8 8 O 1.20823 * 119.99966 * 359.97438 * 7 6 5 9 9 C 1.50705 * 119.99513 * 180.02562 * 7 6 5 10 10 C 1.53004 * 109.46342 * 180.02562 * 9 7 6 11 11 H 1.09006 * 109.47313 * 305.36211 * 10 9 7 12 12 C 1.50690 * 109.47483 * 65.36840 * 10 9 7 13 13 H 1.07994 * 120.00279 * 34.61653 * 12 10 9 14 14 C 1.37880 * 119.99898 * 214.62018 * 12 10 9 15 15 N 1.31512 * 120.00243 * 186.44874 * 14 12 10 16 16 Si 1.86801 * 120.00238 * 6.44387 * 14 12 10 17 17 H 1.48502 * 109.47178 * 85.00585 * 16 14 12 18 18 H 1.48492 * 109.47345 * 205.00791 * 16 14 12 19 19 H 1.48504 * 109.46924 * 325.00825 * 16 14 12 20 20 C 1.50700 * 109.46571 * 185.36777 * 10 9 7 21 21 C 1.38232 * 120.00155 * 296.35459 * 20 10 9 22 22 C 1.38236 * 120.00367 * 179.78895 * 21 20 10 23 23 C 1.38237 * 119.99686 * 0.44321 * 22 21 20 24 24 C 1.38234 * 120.00301 * 359.81476 * 23 22 21 25 25 C 1.38238 * 119.99781 * 359.97438 * 24 23 22 26 26 C 1.38664 * 118.42018 * 359.97438 * 4 3 2 27 27 C 1.38184 * 119.16737 * 0.02562 * 26 4 3 28 28 N 1.31853 * 119.61435 * 180.02562 * 2 1 3 29 29 H 1.09005 * 109.46997 * 269.98058 * 1 2 3 30 30 H 1.09004 * 109.47217 * 29.97382 * 1 2 3 31 31 H 1.08998 * 109.47451 * 149.97479 * 1 2 3 32 32 H 1.07998 * 120.41906 * 0.02562 * 3 2 1 33 33 H 1.08997 * 109.47269 * 29.98223 * 5 4 3 34 34 H 1.09001 * 109.46572 * 149.97658 * 5 4 3 35 35 H 1.09002 * 109.47201 * 299.99224 * 9 7 6 36 36 H 1.08996 * 109.47465 * 60.00052 * 9 7 6 37 37 H 0.96997 * 120.00610 * 180.02562 * 15 14 12 38 38 H 1.08004 * 119.99983 * 359.97438 * 21 20 10 39 39 H 1.07995 * 120.00467 * 180.27018 * 22 21 20 40 40 H 1.08002 * 119.99846 * 179.82838 * 23 22 21 41 41 H 1.07997 * 120.00684 * 179.97438 * 24 23 22 42 42 H 1.08000 * 120.00423 * 180.02562 * 25 24 23 43 43 H 1.08008 * 120.41535 * 180.02562 * 26 4 3 44 44 H 1.07995 * 119.61917 * 180.02562 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5765 1.1904 -0.0005 5 6 4.3582 2.4788 0.0000 6 8 4.6091 2.8933 -1.3687 7 6 5.2999 4.0308 -1.5440 8 8 5.6817 4.6596 -0.5855 9 6 5.5981 4.5242 -2.9365 10 6 6.3919 5.8297 -2.8557 11 1 5.8485 6.5480 -2.2417 12 6 7.7403 5.5605 -2.2393 13 1 8.2456 4.6258 -2.4326 14 6 8.3291 6.5074 -1.4283 15 7 9.5572 6.3288 -0.9932 16 14 7.3823 8.0443 -0.9475 17 1 6.5410 7.7557 0.2417 18 1 8.3381 9.1339 -0.6249 19 1 6.5149 8.4650 -2.0771 20 6 6.5764 6.3918 -4.2417 21 6 7.3068 5.6886 -5.1812 22 6 7.4724 6.2021 -6.4539 23 6 6.9152 7.4233 -6.7843 24 6 6.1893 8.1292 -5.8432 25 6 6.0200 7.6135 -4.5718 26 6 4.2266 -0.0344 -0.0005 27 6 3.4765 -1.1949 -0.0005 28 7 2.1586 -1.1463 -0.0005 29 1 -0.3633 -0.0003 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3634 -0.8897 -0.5142 32 1 1.6508 2.1372 0.0004 33 1 3.7859 3.2509 0.5143 34 1 5.3075 2.3275 0.5138 35 1 6.1842 3.7755 -3.4695 36 1 4.6628 4.6995 -3.4679 37 1 9.9713 6.9948 -0.4224 38 1 7.7456 4.7364 -4.9219 39 1 8.0393 5.6507 -7.1893 40 1 7.0469 7.8259 -7.7778 41 1 5.7543 9.0834 -6.1012 42 1 5.4525 8.1647 -3.8366 43 1 5.3057 -0.0806 -0.0005 44 1 3.9753 -2.1528 -0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000856935406.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:36 Heat of formation + Delta-G solvation = -33.620190 kcal Electronic energy + Delta-G solvation = -26226.684643 eV Core-core repulsion = 22494.703858 eV Total energy + Delta-G solvation = -3731.980784 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.55837 -39.79612 -38.60426 -36.27660 -34.21245 -33.62062 -32.77489 -31.78603 -30.25486 -29.33791 -27.93471 -27.34680 -25.91326 -23.33862 -22.82928 -21.96148 -21.29456 -20.69926 -19.26184 -17.18931 -17.11087 -16.90665 -16.68546 -16.07167 -15.78647 -15.58909 -15.18461 -14.64032 -14.52472 -14.27360 -13.88776 -13.58353 -13.27192 -13.05079 -12.83193 -12.77441 -12.66026 -12.52922 -12.38765 -12.05725 -12.03974 -11.89807 -11.68992 -11.17584 -10.86171 -10.61960 -10.44648 -10.32855 -10.08521 -9.97510 -9.71031 -9.67759 -9.56045 -9.23444 -9.11158 -8.50512 -8.24895 -7.89045 -6.08591 -4.07264 0.92310 0.94406 2.05615 2.09399 2.95385 3.11332 3.35733 3.40251 3.44244 3.70536 4.10946 4.38883 4.45450 4.50694 4.52706 4.87134 4.93363 5.14488 5.22259 5.29271 5.32774 5.34424 5.39022 5.48018 5.51582 5.55848 5.64059 5.64402 5.77054 5.83473 5.87613 5.88326 6.01641 6.14895 6.19026 6.25263 6.43369 6.51300 6.62511 6.74950 6.89047 6.93586 7.10504 7.21482 7.48157 7.63219 7.74611 7.78952 8.40679 8.48389 8.90093 9.55514 11.03910 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013883 B = 0.003013 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.301293 B = 9289.572730 C =10218.213878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.122 3.878 3 C -0.151 4.151 4 C -0.039 4.039 5 C 0.104 3.896 6 O -0.365 6.365 7 C 0.459 3.541 8 O -0.470 6.470 9 C -0.089 4.089 10 C 0.053 3.947 11 H 0.051 0.949 12 C -0.498 4.498 13 H 0.073 0.927 14 C 0.087 3.913 15 N -0.895 5.895 16 Si 0.871 3.129 17 H -0.272 1.272 18 H -0.294 1.294 19 H -0.259 1.259 20 C -0.040 4.040 21 C -0.100 4.100 22 C -0.127 4.127 23 C -0.147 4.147 24 C -0.126 4.126 25 C -0.135 4.135 26 C -0.156 4.156 27 C 0.101 3.899 28 N -0.484 5.484 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.136 0.864 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.264 0.736 38 H 0.120 0.880 39 H 0.111 0.889 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.112 0.888 43 H 0.139 0.861 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.281 -8.659 -2.414 16.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.016 4.016 3 C -0.171 4.171 4 C -0.047 4.047 5 C 0.030 3.970 6 O -0.284 6.284 7 C 0.300 3.700 8 O -0.353 6.353 9 C -0.127 4.127 10 C 0.034 3.966 11 H 0.069 0.931 12 C -0.535 4.535 13 H 0.091 0.909 14 C -0.116 4.116 15 N -0.532 5.532 16 Si 0.699 3.301 17 H -0.198 1.198 18 H -0.220 1.220 19 H -0.184 1.184 20 C -0.040 4.040 21 C -0.118 4.118 22 C -0.145 4.145 23 C -0.165 4.165 24 C -0.144 4.144 25 C -0.153 4.153 26 C -0.176 4.176 27 C -0.056 4.056 28 N -0.194 5.194 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.154 0.846 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.115 0.885 36 H 0.100 0.900 37 H 0.073 0.927 38 H 0.138 0.862 39 H 0.129 0.871 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.130 0.870 43 H 0.157 0.843 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -14.474 -9.154 -1.953 17.236 hybrid contribution 0.462 1.756 0.538 1.894 sum -14.012 -7.398 -1.414 15.908 Atomic orbital electron populations 1.20710 0.88698 1.03560 1.03064 1.21285 0.97090 0.88144 0.95053 1.21922 0.94035 0.99630 1.01478 1.20032 0.93696 0.94524 0.96440 1.21638 0.99863 0.92650 0.82859 1.86579 1.69473 1.42626 1.29726 1.23971 0.74465 0.77722 0.93797 1.90712 1.46334 1.55686 1.42563 1.21504 1.01277 1.00637 0.89271 1.18192 0.97230 0.91302 0.89876 0.93106 1.20614 1.00367 1.04224 1.28288 0.90869 1.24893 0.94216 0.97687 0.94777 1.69887 1.12771 1.35899 1.34605 0.86957 0.80319 0.82888 0.79961 1.19787 1.22029 1.18408 1.20606 0.93508 0.93963 0.95969 1.20970 0.97963 1.00564 0.92352 1.21059 1.00352 0.96244 0.96835 1.20882 1.00692 0.96073 0.98900 1.20967 1.00122 0.99338 0.94000 1.21143 1.01388 0.96714 0.96038 1.22144 1.01963 0.92674 1.00797 1.22735 0.89286 0.98376 0.95195 1.67497 1.10133 1.29426 1.12359 0.90428 0.90607 0.90437 0.84584 0.90270 0.89843 0.88478 0.90012 0.92664 0.86171 0.87086 0.87349 0.87301 0.86964 0.84300 0.82414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.79 10.17 36.01 0.37 -0.43 16 2 C 0.12 1.34 6.78 -82.59 -0.56 0.78 16 3 C -0.15 -1.69 9.45 -39.44 -0.37 -2.06 16 4 C -0.04 -0.48 5.56 -104.32 -0.58 -1.06 16 5 C 0.10 1.47 5.64 36.01 0.20 1.67 16 6 O -0.37 -6.07 10.20 -39.28 -0.40 -6.47 16 7 C 0.46 8.93 7.71 36.01 0.28 9.21 16 8 O -0.47 -10.88 14.75 -18.75 -0.28 -11.15 16 9 C -0.09 -1.64 5.05 -27.88 -0.14 -1.78 16 10 C 0.05 1.17 1.28 -92.93 -0.12 1.05 16 11 H 0.05 1.18 4.78 -51.93 -0.25 0.93 16 12 C -0.50 -13.24 6.94 -34.44 -0.24 -13.48 16 13 H 0.07 2.10 8.06 -52.49 -0.42 1.68 16 14 C 0.09 2.49 5.47 -17.82 -0.10 2.39 16 15 N -0.89 -27.22 13.96 55.43 0.77 -26.45 16 16 Si 0.87 21.96 27.04 -169.99 -4.60 17.36 16 17 H -0.27 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 19 H -0.26 -6.03 5.15 56.52 0.29 -5.74 16 20 C -0.04 -0.81 4.77 -104.62 -0.50 -1.31 16 21 C -0.10 -1.91 8.87 -39.58 -0.35 -2.26 16 22 C -0.13 -2.11 10.05 -39.58 -0.40 -2.51 16 23 C -0.15 -2.34 10.05 -39.58 -0.40 -2.74 16 24 C -0.13 -2.11 10.05 -39.58 -0.40 -2.50 16 25 C -0.13 -2.57 9.13 -39.58 -0.36 -2.93 16 26 C -0.16 -1.76 9.82 -39.44 -0.39 -2.14 16 27 C 0.10 1.08 11.18 -17.55 -0.20 0.88 16 28 N -0.48 -5.81 10.27 -9.48 -0.10 -5.90 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.47 8.08 -51.93 -0.42 0.05 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.08 1.06 8.09 -51.93 -0.42 0.64 16 34 H 0.08 1.20 8.09 -51.93 -0.42 0.78 16 35 H 0.10 1.68 7.80 -51.93 -0.41 1.28 16 36 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 38 H 0.12 2.24 7.77 -52.48 -0.41 1.84 16 39 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 40 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 41 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 42 H 0.11 2.09 6.96 -52.49 -0.37 1.73 16 43 H 0.14 1.37 8.06 -52.48 -0.42 0.94 16 44 H 0.16 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 374.26 15.07 5.64 5.64 Total: -1.00 -33.06 374.26 -9.37 -42.43 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -6.16 Total: 3.76 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: -4.25 Total: -19.22 kcal Atomic # 7 Polarization: -33.03 SS G_CDS: 0.68 Total: -32.35 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.68 Total: -17.62 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.60 Total: 17.36 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.06 -9.37 -42.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856935406.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.811 kcal (2) G-P(sol) polarization free energy of solvation -33.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds