Wall clock time and date at job start Tue Mar 31 2020 14:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46661 * 2 1 4 4 C 1.53007 * 109.46866 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47236 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47198 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.47194 * 180.02562 * 6 5 4 8 8 N 1.46505 * 109.47278 * 179.97438 * 7 6 5 9 9 S 1.65597 * 120.00072 * 164.99641 * 8 7 6 10 10 O 1.42098 * 106.40087 * 311.45861 * 9 8 7 11 11 O 1.42098 * 106.39917 * 178.54168 * 9 8 7 12 12 C 1.76200 * 107.21637 * 65.00174 * 9 8 7 13 13 C 1.38663 * 119.87357 * 270.24777 * 12 9 8 14 14 C 1.38609 * 120.49761 * 180.30197 * 13 12 9 15 15 C 1.37636 * 120.25144 * 359.45034 * 14 13 12 16 16 C 1.40702 * 119.74414 * 0.27080 * 15 14 13 17 17 C 1.41389 * 120.24759 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00485 * 204.39220 * 17 16 15 19 19 C 1.39942 * 119.99857 * 24.38333 * 17 16 15 20 20 N 1.30830 * 119.99921 * 17.87213 * 19 17 16 21 21 Si 1.86807 * 120.00314 * 197.86702 * 19 17 16 22 22 H 1.48500 * 109.46633 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46828 * 120.00062 * 21 19 17 24 24 H 1.48497 * 109.47200 * 240.00400 * 21 19 17 25 25 C 1.37598 * 119.87586 * 90.00318 * 12 9 8 26 26 H 1.09004 * 109.47214 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47470 * 299.99885 * 1 2 3 28 28 H 1.09003 * 109.46887 * 60.00283 * 1 2 3 29 29 H 1.08997 * 109.47470 * 240.00115 * 2 1 3 30 30 H 1.09003 * 109.46887 * 119.99717 * 2 1 3 31 31 H 1.09006 * 109.47246 * 60.00102 * 3 2 1 32 32 H 1.08998 * 109.47648 * 299.99734 * 3 2 1 33 33 H 1.09006 * 109.46840 * 60.00177 * 4 3 2 34 34 H 1.08998 * 109.47035 * 300.00434 * 4 3 2 35 35 H 1.08997 * 109.46933 * 60.00070 * 5 4 3 36 36 H 1.08998 * 109.47431 * 300.00151 * 5 4 3 37 37 H 1.08997 * 109.47419 * 60.00003 * 6 5 4 38 38 H 1.09003 * 109.46770 * 299.99708 * 6 5 4 39 39 H 1.08997 * 109.47200 * 59.99545 * 7 6 5 40 40 H 1.09003 * 109.46759 * 299.99391 * 7 6 5 41 41 H 0.97007 * 119.99457 * 345.00054 * 8 7 6 42 42 H 1.08001 * 119.74681 * 0.04757 * 13 12 9 43 43 H 1.08003 * 119.87315 * 179.72263 * 14 13 12 44 44 H 1.07999 * 120.13059 * 180.25214 * 15 14 13 45 45 H 0.97008 * 119.99884 * 179.97438 * 20 19 17 46 46 H 1.07997 * 120.12829 * 359.97438 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0800 2.8850 0.0013 6 6 5.6099 2.8851 0.0013 7 6 6.1199 4.3276 0.0026 8 7 7.5850 4.3277 0.0032 9 16 8.4131 5.7132 -0.3667 10 8 7.8326 6.2211 -1.5601 11 8 9.7938 5.3996 -0.2464 12 6 8.0573 6.8869 0.8984 13 6 6.9713 7.7387 0.7648 14 6 6.6832 8.6710 1.7491 15 6 7.4676 8.7533 2.8771 16 6 8.5687 7.8901 3.0262 17 6 9.3819 7.9658 4.1804 18 1 10.4049 7.6217 4.1438 19 6 8.8611 8.4869 5.3702 20 7 7.5662 8.5773 5.5332 21 14 10.0149 9.0532 6.7258 22 1 11.4215 8.8469 6.2968 23 1 9.7875 10.4950 6.9991 24 1 9.7529 8.2683 7.9589 25 6 8.8552 6.9513 2.0176 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.9337 0.9286 -0.8892 34 1 3.9330 0.9288 0.8908 35 1 3.7162 3.3985 0.8913 36 1 3.7170 3.3992 -0.8886 37 1 5.9733 2.3717 -0.8889 38 1 5.9732 2.3709 0.8911 39 1 5.7565 4.8407 0.8930 40 1 5.7566 4.8421 -0.8870 41 1 8.0699 3.5160 0.2202 42 1 6.3477 7.6778 -0.1149 43 1 5.8375 9.3325 1.6325 44 1 7.2389 9.4777 3.6448 45 1 7.2052 8.9381 6.3582 46 1 9.6979 6.2840 2.1217 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859247518.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:23 Heat of formation + Delta-G solvation = -102.221942 kcal Electronic energy + Delta-G solvation = -24703.406629 eV Core-core repulsion = 21103.895001 eV Total energy + Delta-G solvation = -3599.511628 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -37.64351 -37.25126 -36.61868 -35.57214 -35.27426 -33.85234 -32.99630 -30.08082 -29.78743 -29.48470 -25.69382 -25.48072 -22.60426 -21.89875 -21.23168 -21.12855 -20.93983 -18.99510 -17.94299 -16.90308 -16.29581 -15.97588 -15.87314 -15.29313 -15.05980 -14.75452 -14.41211 -14.26258 -13.81377 -13.50196 -13.41890 -13.33022 -12.76674 -12.58800 -12.48384 -12.19964 -11.91074 -11.61686 -11.59350 -11.54966 -11.45010 -11.38369 -11.37878 -11.35135 -11.09339 -10.98648 -10.90837 -10.86520 -10.64023 -10.60008 -10.47380 -9.77978 -9.65336 -9.36410 -9.11187 -8.04008 -7.70990 -6.93831 -4.54098 1.06295 2.19864 2.62081 2.99664 3.03668 3.06792 3.60135 3.82334 4.25980 4.42480 4.44222 4.64777 4.78848 4.88046 4.88699 5.03205 5.12587 5.17591 5.29303 5.40707 5.47575 5.48641 5.52792 5.64148 5.67630 5.76267 5.79073 5.85224 5.89329 6.01118 6.03035 6.05624 6.16476 6.18164 6.23109 6.30789 6.65409 6.75919 6.84958 7.02647 7.20302 7.26372 7.38507 7.72497 7.80818 7.93978 8.40039 8.66378 8.71415 10.01600 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011458 B = 0.002727 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.090398 B =10264.510711 C =11742.299595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.122 4.122 4 C -0.119 4.119 5 C -0.121 4.121 6 C -0.125 4.125 7 C 0.118 3.882 8 N -1.122 6.122 9 S 2.691 3.309 10 O -0.976 6.976 11 O -0.974 6.974 12 C -0.631 4.631 13 C -0.149 4.149 14 C -0.121 4.121 15 C -0.119 4.119 16 C 0.090 3.910 17 C -0.459 4.459 18 H 0.083 0.917 19 C 0.074 3.926 20 N -0.794 5.794 21 Si 0.911 3.089 22 H -0.259 1.259 23 H -0.271 1.271 24 H -0.273 1.273 25 C -0.124 4.124 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.413 0.587 42 H 0.106 0.894 43 H 0.098 0.902 44 H 0.125 0.875 45 H 0.283 0.717 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.793 -11.906 -6.100 16.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.157 4.157 5 C -0.159 4.159 6 C -0.164 4.164 7 C -0.009 4.009 8 N -0.880 5.880 9 S 2.787 3.213 10 O -0.966 6.966 11 O -0.965 6.965 12 C -0.723 4.723 13 C -0.170 4.170 14 C -0.140 4.140 15 C -0.139 4.139 16 C 0.087 3.913 17 C -0.489 4.489 18 H 0.101 0.899 19 C -0.143 4.143 20 N -0.419 5.419 21 Si 0.735 3.265 22 H -0.182 1.182 23 H -0.196 1.196 24 H -0.199 1.199 25 C -0.145 4.145 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.246 0.754 42 H 0.124 0.876 43 H 0.116 0.884 44 H 0.143 0.857 45 H 0.094 0.906 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -9.533 -11.574 -6.727 16.435 hybrid contribution 0.225 0.226 1.572 1.604 sum -9.308 -11.348 -5.156 15.556 Atomic orbital electron populations 1.21787 0.96046 1.01437 1.01834 1.21545 0.95744 0.97160 1.01892 1.21643 0.95561 0.96554 1.02190 1.21601 0.95223 0.96833 1.02036 1.21562 0.94669 0.96947 1.02733 1.21775 0.95825 0.96027 1.02759 1.21281 0.78877 0.98203 1.02491 1.55548 1.15399 1.28079 1.88962 1.01583 0.72516 0.72879 0.74370 1.93505 1.78895 1.79584 1.44657 1.93533 1.31362 1.84055 1.87524 1.29754 1.07881 1.18257 1.16433 1.20085 0.97711 0.99802 0.99443 1.20809 0.99407 0.98799 0.95004 1.21639 0.96796 0.99083 0.96372 1.17699 0.92134 0.89471 0.92001 1.19651 0.99233 1.36173 0.93818 0.89867 1.25942 0.95413 0.93056 0.99935 1.69793 1.12676 1.32914 1.26549 0.86209 0.81452 0.79086 0.79754 1.18202 1.19592 1.19864 1.20783 0.99508 0.99986 0.94219 0.92957 0.92736 0.92797 0.92176 0.92118 0.91920 0.92002 0.92072 0.91982 0.91411 0.91591 0.91346 0.91242 0.91312 0.90529 0.75404 0.87618 0.88401 0.85746 0.90649 0.87052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.62 16 2 C -0.13 -0.87 5.93 -26.73 -0.16 -1.03 16 3 C -0.12 -0.91 5.21 -26.73 -0.14 -1.05 16 4 C -0.12 -0.94 5.21 -26.73 -0.14 -1.08 16 5 C -0.12 -1.08 5.21 -26.74 -0.14 -1.22 16 6 C -0.12 -1.24 5.36 -26.73 -0.14 -1.38 16 7 C 0.12 1.51 6.22 -4.04 -0.03 1.49 16 8 N -1.12 -16.12 6.00 -10.61 -0.06 -16.18 16 9 S 2.69 50.31 5.73 -107.50 -0.62 49.69 16 10 O -0.98 -19.86 16.74 -57.17 -0.96 -20.82 16 11 O -0.97 -20.47 17.27 -57.17 -0.99 -21.46 16 12 C -0.63 -13.75 5.94 -39.66 -0.24 -13.98 16 13 C -0.15 -3.22 9.53 -39.29 -0.37 -3.59 16 14 C -0.12 -2.70 10.02 -39.66 -0.40 -3.09 16 15 C -0.12 -2.96 8.70 -38.87 -0.34 -3.30 16 16 C 0.09 2.34 5.58 -106.82 -0.60 1.74 16 17 C -0.46 -11.79 9.05 -37.75 -0.34 -12.13 16 18 H 0.08 2.06 7.91 -52.49 -0.41 1.65 16 19 C 0.07 1.79 5.14 -17.34 -0.09 1.71 16 20 N -0.79 -19.52 10.95 55.55 0.61 -18.91 16 21 Si 0.91 18.02 29.60 -169.99 -5.03 12.99 16 22 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 23 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 24 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 25 C -0.12 -2.97 9.26 -38.87 -0.36 -3.33 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.08 0.98 7.75 -51.93 -0.40 0.58 16 41 H 0.41 4.96 8.65 -34.48 -0.30 4.66 16 42 H 0.11 2.04 7.61 -52.49 -0.40 1.65 16 43 H 0.10 1.90 8.06 -52.48 -0.42 1.48 16 44 H 0.12 3.14 6.15 -52.49 -0.32 2.82 16 45 H 0.28 6.28 8.30 -40.82 -0.34 5.94 16 46 H 0.11 2.57 7.60 -52.49 -0.40 2.17 16 LS Contribution 389.92 15.07 5.88 5.88 Total: -1.00 -30.02 389.92 -11.99 -42.01 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -7.71 Total: 7.67 kcal Atomic # 6 Polarization: -37.75 SS G_CDS: -3.11 Total: -40.86 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: 0.54 Total: -35.10 kcal Atomic # 8 Polarization: -40.33 SS G_CDS: -1.94 Total: -42.28 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 12.99 kcal Atomic # 16 Polarization: 50.31 SS G_CDS: -0.62 Total: 49.69 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.02 -11.99 -42.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859247518.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.208 kcal (2) G-P(sol) polarization free energy of solvation -30.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds