Wall clock time and date at job start Tue Mar 31 2020 14:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46661 * 2 1 4 4 C 1.53007 * 109.46866 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47236 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47198 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.47194 * 180.02562 * 6 5 4 8 8 N 1.46505 * 109.47278 * 179.97438 * 7 6 5 9 9 S 1.65597 * 120.00072 * 164.99641 * 8 7 6 10 10 O 1.42098 * 106.40087 * 311.45861 * 9 8 7 11 11 O 1.42098 * 106.39917 * 178.54168 * 9 8 7 12 12 C 1.76200 * 107.21637 * 65.00174 * 9 8 7 13 13 C 1.38663 * 119.87357 * 270.24777 * 12 9 8 14 14 C 1.38609 * 120.49761 * 180.30197 * 13 12 9 15 15 C 1.37636 * 120.25144 * 359.45034 * 14 13 12 16 16 C 1.40702 * 119.74414 * 0.27080 * 15 14 13 17 17 C 1.41389 * 120.24759 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00485 * 204.39220 * 17 16 15 19 19 C 1.39942 * 119.99857 * 24.38333 * 17 16 15 20 20 N 1.30830 * 119.99921 * 17.87213 * 19 17 16 21 21 Si 1.86807 * 120.00314 * 197.86702 * 19 17 16 22 22 H 1.48500 * 109.46633 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46828 * 120.00062 * 21 19 17 24 24 H 1.48497 * 109.47200 * 240.00400 * 21 19 17 25 25 C 1.37598 * 119.87586 * 90.00318 * 12 9 8 26 26 H 1.09004 * 109.47214 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47470 * 299.99885 * 1 2 3 28 28 H 1.09003 * 109.46887 * 60.00283 * 1 2 3 29 29 H 1.08997 * 109.47470 * 240.00115 * 2 1 3 30 30 H 1.09003 * 109.46887 * 119.99717 * 2 1 3 31 31 H 1.09006 * 109.47246 * 60.00102 * 3 2 1 32 32 H 1.08998 * 109.47648 * 299.99734 * 3 2 1 33 33 H 1.09006 * 109.46840 * 60.00177 * 4 3 2 34 34 H 1.08998 * 109.47035 * 300.00434 * 4 3 2 35 35 H 1.08997 * 109.46933 * 60.00070 * 5 4 3 36 36 H 1.08998 * 109.47431 * 300.00151 * 5 4 3 37 37 H 1.08997 * 109.47419 * 60.00003 * 6 5 4 38 38 H 1.09003 * 109.46770 * 299.99708 * 6 5 4 39 39 H 1.08997 * 109.47200 * 59.99545 * 7 6 5 40 40 H 1.09003 * 109.46759 * 299.99391 * 7 6 5 41 41 H 0.97007 * 119.99457 * 345.00054 * 8 7 6 42 42 H 1.08001 * 119.74681 * 0.04757 * 13 12 9 43 43 H 1.08003 * 119.87315 * 179.72263 * 14 13 12 44 44 H 1.07999 * 120.13059 * 180.25214 * 15 14 13 45 45 H 0.97008 * 119.99884 * 179.97438 * 20 19 17 46 46 H 1.07997 * 120.12829 * 359.97438 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0800 2.8850 0.0013 6 6 5.6099 2.8851 0.0013 7 6 6.1199 4.3276 0.0026 8 7 7.5850 4.3277 0.0032 9 16 8.4131 5.7132 -0.3667 10 8 7.8326 6.2211 -1.5601 11 8 9.7938 5.3996 -0.2464 12 6 8.0573 6.8869 0.8984 13 6 6.9713 7.7387 0.7648 14 6 6.6832 8.6710 1.7491 15 6 7.4676 8.7533 2.8771 16 6 8.5687 7.8901 3.0262 17 6 9.3819 7.9658 4.1804 18 1 10.4049 7.6217 4.1438 19 6 8.8611 8.4869 5.3702 20 7 7.5662 8.5773 5.5332 21 14 10.0149 9.0532 6.7258 22 1 11.4215 8.8469 6.2968 23 1 9.7875 10.4950 6.9991 24 1 9.7529 8.2683 7.9589 25 6 8.8552 6.9513 2.0176 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.9337 0.9286 -0.8892 34 1 3.9330 0.9288 0.8908 35 1 3.7162 3.3985 0.8913 36 1 3.7170 3.3992 -0.8886 37 1 5.9733 2.3717 -0.8889 38 1 5.9732 2.3709 0.8911 39 1 5.7565 4.8407 0.8930 40 1 5.7566 4.8421 -0.8870 41 1 8.0699 3.5160 0.2202 42 1 6.3477 7.6778 -0.1149 43 1 5.8375 9.3325 1.6325 44 1 7.2389 9.4777 3.6448 45 1 7.2052 8.9381 6.3582 46 1 9.6979 6.2840 2.1217 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859247518.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:22 Heat of formation + Delta-G solvation = -119.093175 kcal Electronic energy + Delta-G solvation = -24704.138221 eV Core-core repulsion = 21103.895001 eV Total energy + Delta-G solvation = -3600.243220 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.44726 -38.32783 -37.93117 -36.89851 -36.43577 -35.67179 -33.80038 -31.91681 -31.58406 -30.25594 -27.35496 -26.46684 -23.68948 -23.38400 -22.78528 -21.94855 -21.72818 -20.52361 -19.60272 -18.38073 -17.73936 -17.28545 -16.99833 -16.75739 -16.54083 -15.92179 -15.87541 -15.22680 -15.05936 -14.86969 -14.56218 -14.31814 -14.10846 -13.77691 -13.70635 -13.32887 -13.25475 -13.12361 -13.07728 -13.03977 -12.89861 -12.80463 -12.66266 -12.61272 -12.21979 -12.13543 -12.06422 -11.72676 -11.55910 -11.50667 -11.34034 -11.27078 -11.20289 -11.15148 -10.40027 -9.84915 -9.56522 -8.74164 -6.45674 -0.46438 0.40733 0.83691 1.36859 1.43993 1.51920 2.16255 2.17158 2.55203 2.80010 3.46288 3.53012 3.79407 4.02095 4.05401 4.19151 4.25361 4.30264 4.40735 4.44147 4.47026 4.55925 4.71621 4.78178 4.83069 4.84629 4.90215 4.91930 5.03011 5.06342 5.08169 5.10283 5.18379 5.20446 5.26182 5.34392 5.34662 5.41034 5.47454 5.55801 5.56511 5.59513 5.88585 5.93759 6.09734 6.15418 6.52273 6.79112 6.84280 8.23861 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011458 B = 0.002727 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.090398 B =10264.510711 C =11742.299595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.116 4.116 5 C -0.120 4.120 6 C -0.118 4.118 7 C 0.109 3.891 8 N -1.106 6.106 9 S 2.722 3.278 10 O -0.987 6.987 11 O -0.997 6.997 12 C -0.638 4.638 13 C -0.148 4.148 14 C -0.122 4.122 15 C -0.142 4.142 16 C 0.061 3.939 17 C -0.497 4.497 18 H 0.078 0.922 19 C 0.037 3.963 20 N -0.821 5.821 21 Si 0.983 3.017 22 H -0.261 1.261 23 H -0.262 1.262 24 H -0.263 1.263 25 C -0.146 4.146 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.080 0.920 41 H 0.426 0.574 42 H 0.133 0.867 43 H 0.127 0.873 44 H 0.113 0.887 45 H 0.292 0.708 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.586 -12.799 -6.568 17.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.153 4.153 5 C -0.158 4.158 6 C -0.157 4.157 7 C -0.017 4.017 8 N -0.869 5.869 9 S 2.814 3.186 10 O -0.977 6.977 11 O -0.987 6.987 12 C -0.727 4.727 13 C -0.168 4.168 14 C -0.142 4.142 15 C -0.162 4.162 16 C 0.057 3.943 17 C -0.526 4.526 18 H 0.096 0.904 19 C -0.178 4.178 20 N -0.446 5.446 21 Si 0.803 3.197 22 H -0.184 1.184 23 H -0.187 1.187 24 H -0.188 1.188 25 C -0.167 4.167 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.098 0.902 41 H 0.262 0.738 42 H 0.150 0.850 43 H 0.145 0.855 44 H 0.131 0.869 45 H 0.103 0.897 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.336 -12.452 -7.181 17.704 hybrid contribution 0.371 0.431 1.602 1.700 sum -9.965 -12.020 -5.579 16.580 Atomic orbital electron populations 1.21795 0.95766 1.01825 1.01801 1.21544 0.96026 0.96739 1.02026 1.21630 0.95338 0.96935 1.01981 1.21565 0.95394 0.96058 1.02318 1.21557 0.93882 0.97709 1.02664 1.21752 0.96390 0.93973 1.03631 1.21527 0.77467 1.00378 1.02329 1.55200 1.16218 1.26928 1.88514 1.00693 0.71851 0.72807 0.73226 1.93489 1.79084 1.80395 1.44688 1.93498 1.33311 1.84354 1.87571 1.30276 1.07032 1.19028 1.16348 1.20475 0.97619 0.98839 0.99895 1.21150 0.99658 0.99162 0.94183 1.21648 0.97676 0.99506 0.97366 1.18064 0.92956 0.90350 0.92885 1.19867 0.99304 1.38418 0.95038 0.90434 1.26741 0.96930 0.92419 1.01746 1.69820 1.14071 1.33063 1.27656 0.85146 0.78919 0.78880 0.76743 1.18422 1.18680 1.18789 1.20860 1.00362 1.00284 0.95173 0.92390 0.92939 0.92679 0.91840 0.92180 0.92420 0.91940 0.91474 0.91998 0.91977 0.91252 0.90151 0.90729 0.92084 0.90180 0.73751 0.84954 0.85503 0.86888 0.89728 0.87237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.91 71.98 0.71 -1.07 16 2 C -0.13 -1.55 5.93 30.60 0.18 -1.37 16 3 C -0.12 -1.63 5.21 30.60 0.16 -1.47 16 4 C -0.12 -1.60 5.21 30.60 0.16 -1.44 16 5 C -0.12 -1.90 5.21 30.59 0.16 -1.74 16 6 C -0.12 -2.07 5.36 30.59 0.16 -1.91 16 7 C 0.11 2.57 6.22 86.38 0.54 3.11 16 8 N -1.11 -29.84 6.00 -187.48 -1.12 -30.97 16 9 S 2.72 98.60 5.73 -56.49 -0.32 98.27 16 10 O -0.99 -38.26 16.74 -128.00 -2.14 -40.41 16 11 O -1.00 -41.27 17.27 -128.00 -2.21 -43.48 16 12 C -0.64 -27.61 5.94 22.22 0.13 -27.47 16 13 C -0.15 -6.20 9.53 22.46 0.21 -5.98 16 14 C -0.12 -5.41 10.02 22.22 0.22 -5.19 16 15 C -0.14 -7.22 8.70 22.73 0.20 -7.03 16 16 C 0.06 3.24 5.58 -21.29 -0.12 3.12 16 17 C -0.50 -26.43 9.05 23.46 0.21 -26.22 16 18 H 0.08 4.03 7.91 -2.91 -0.02 4.00 16 19 C 0.04 1.82 5.14 85.25 0.44 2.26 16 20 N -0.82 -41.00 10.95 21.83 0.24 -40.76 16 21 Si 0.98 37.17 29.60 68.60 2.03 39.20 16 22 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 23 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 24 H -0.26 -9.46 7.11 99.48 0.71 -8.76 16 25 C -0.15 -7.18 9.26 22.73 0.21 -6.97 16 26 H 0.06 0.59 8.14 -2.38 -0.02 0.58 16 27 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 34 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.08 1.24 8.14 -2.39 -0.02 1.23 16 38 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.08 1.87 7.75 -2.39 -0.02 1.85 16 41 H 0.43 9.40 8.65 -96.74 -0.84 8.56 16 42 H 0.13 4.80 7.61 -2.91 -0.02 4.78 16 43 H 0.13 4.74 8.06 -2.91 -0.02 4.71 16 44 H 0.11 5.89 6.15 -2.91 -0.02 5.87 16 45 H 0.29 13.04 8.30 -92.70 -0.77 12.27 16 46 H 0.11 5.26 7.60 -2.91 -0.02 5.23 16 Total: -1.00 -64.47 389.92 0.17 -64.30 By element: Atomic # 1 Polarization: 33.08 SS G_CDS: 0.12 Total: 33.20 kcal Atomic # 6 Polarization: -82.94 SS G_CDS: 3.58 Total: -79.36 kcal Atomic # 7 Polarization: -70.84 SS G_CDS: -0.89 Total: -71.73 kcal Atomic # 8 Polarization: -79.53 SS G_CDS: -4.35 Total: -83.88 kcal Atomic # 14 Polarization: 37.17 SS G_CDS: 2.03 Total: 39.20 kcal Atomic # 16 Polarization: 98.60 SS G_CDS: -0.32 Total: 98.27 kcal Total: -64.47 0.17 -64.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859247518.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.794 kcal (2) G-P(sol) polarization free energy of solvation -64.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds