Wall clock time and date at job start Tue Mar 31 2020 14:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38227 * 120.42182 * 2 1 4 4 N 1.31856 * 120.76717 * 179.97438 * 3 2 1 5 5 C 1.31880 * 121.72367 * 359.97438 * 4 3 2 6 6 C 1.38184 * 120.76821 * 0.02562 * 5 4 3 7 7 C 1.38624 * 120.41834 * 179.97438 * 2 1 3 8 8 C 1.50695 * 120.79103 * 0.02562 * 7 2 1 9 9 O 1.45203 * 109.47162 * 180.02562 * 8 7 2 10 10 C 1.34232 * 116.99955 * 180.02562 * 9 8 7 11 11 O 1.20832 * 120.00175 * 359.97438 * 10 9 8 12 12 C 1.50700 * 120.00016 * 180.02562 * 10 9 8 13 13 C 1.53002 * 109.47059 * 179.97438 * 12 10 9 14 14 H 1.08997 * 109.47059 * 54.99868 * 13 12 10 15 15 C 1.50697 * 109.47470 * 294.99717 * 13 12 10 16 16 H 1.08009 * 119.99503 * 325.83639 * 15 13 12 17 17 C 1.37871 * 120.00286 * 145.82853 * 15 13 12 18 18 N 1.31516 * 120.00201 * 6.12673 * 17 15 13 19 19 Si 1.86805 * 119.99869 * 186.11921 * 17 15 13 20 20 H 1.48497 * 109.47316 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.46974 * 120.00546 * 19 17 15 22 22 H 1.48503 * 109.46982 * 240.00220 * 19 17 15 23 23 C 1.50698 * 109.47140 * 174.99307 * 13 12 10 24 24 C 1.38240 * 119.99776 * 63.47497 * 23 13 12 25 25 C 1.38232 * 120.00238 * 179.80960 * 24 23 13 26 26 C 1.38238 * 119.99586 * 0.39675 * 25 24 23 27 27 C 1.38229 * 120.00134 * 359.85528 * 26 25 24 28 28 C 1.38232 * 120.00180 * 359.95484 * 27 26 25 29 29 H 1.09009 * 109.47082 * 270.02710 * 1 2 3 30 30 H 1.09003 * 109.46955 * 30.01844 * 1 2 3 31 31 H 1.08989 * 109.47444 * 150.02338 * 1 2 3 32 32 H 1.08003 * 119.61969 * 0.02562 * 3 2 1 33 33 H 1.08008 * 119.62042 * 179.97438 * 5 4 3 34 34 H 1.07993 * 120.41991 * 179.97438 * 6 5 4 35 35 H 1.08999 * 109.47050 * 300.02060 * 8 7 2 36 36 H 1.08998 * 109.47222 * 60.02243 * 8 7 2 37 37 H 1.08997 * 109.46674 * 299.99289 * 12 10 9 38 38 H 1.08995 * 109.47558 * 59.99912 * 12 10 9 39 39 H 0.96997 * 120.00247 * 180.02562 * 18 17 15 40 40 H 1.08004 * 119.99973 * 359.97438 * 24 23 13 41 41 H 1.08000 * 120.00535 * 180.22529 * 25 24 23 42 42 H 1.08008 * 119.99602 * 179.83792 * 26 25 24 43 43 H 1.08005 * 120.00177 * 179.97438 * 27 26 25 44 44 H 1.07997 * 120.00214 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.1999 0.0005 5 6 4.2256 0.0823 0.0015 6 6 3.5948 -1.1471 0.0016 7 6 2.2088 -1.1954 0.0005 8 6 1.4831 -2.5161 0.0005 9 8 2.4497 -3.5996 0.0018 10 6 1.9629 -4.8505 0.0014 11 8 0.7686 -5.0341 0.0006 12 6 2.9059 -6.0260 0.0032 13 6 2.0999 -7.3265 0.0030 14 1 1.4084 -7.3252 -0.8396 15 6 1.3234 -7.4365 1.2898 16 1 1.7410 -7.0487 2.2073 17 6 0.0798 -8.0318 1.2959 18 7 -0.3776 -8.6105 0.2071 19 14 -0.9553 -8.0167 2.8509 20 1 -0.2197 -7.3075 3.9284 21 1 -2.2380 -7.3174 2.5848 22 1 -1.2314 -9.4127 3.2753 23 6 3.0384 -8.4992 -0.1192 24 6 3.9635 -8.7508 0.8767 25 6 4.8218 -9.8288 0.7666 26 6 4.7604 -10.6504 -0.3434 27 6 3.8389 -10.3958 -1.3417 28 6 2.9780 -9.3201 -1.2297 29 1 -0.3634 0.0005 1.0278 30 1 -0.3633 0.8899 -0.5141 31 1 -0.3634 -0.8901 -0.5134 32 1 1.6676 2.1277 0.0004 33 1 5.3047 0.1285 0.0015 34 1 4.1737 -2.0587 0.0020 35 1 0.8572 -2.5867 0.8901 36 1 0.8584 -2.5874 -0.8898 37 1 3.5353 -5.9882 -0.8859 38 1 3.5328 -5.9877 0.8940 39 1 -1.2526 -9.0290 0.2113 40 1 4.0139 -8.1066 1.7422 41 1 5.5421 -10.0275 1.5463 42 1 5.4328 -11.4912 -0.4307 43 1 3.7912 -11.0375 -2.2092 44 1 2.2583 -9.1210 -2.0099 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859674355.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:28 Heat of formation + Delta-G solvation = -37.276670 kcal Electronic energy + Delta-G solvation = -26401.121511 eV Core-core repulsion = 22668.982170 eV Total energy + Delta-G solvation = -3732.139341 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.56611 -39.68619 -38.39343 -36.21024 -34.17279 -34.07259 -32.25957 -31.57729 -30.05588 -29.21199 -27.93261 -26.94562 -25.65777 -23.27951 -22.60972 -21.72236 -21.59754 -20.60458 -19.33932 -17.26813 -17.01172 -16.68129 -16.28129 -16.01868 -15.75759 -15.20027 -15.10381 -14.54891 -14.46429 -14.17012 -13.92483 -13.51697 -13.34659 -13.02872 -12.93049 -12.79697 -12.60970 -12.46008 -12.07526 -12.05971 -11.85433 -11.70083 -11.45695 -10.98215 -10.84719 -10.64136 -10.51075 -10.31188 -10.15851 -9.68219 -9.59001 -9.50665 -9.48547 -9.11515 -9.04520 -8.46981 -8.08706 -7.68103 -6.04278 -4.05433 0.97448 1.09978 2.24554 2.28367 3.03009 3.07052 3.30394 3.38042 3.40100 3.64625 4.32297 4.42962 4.46803 4.65477 4.69612 4.75093 4.87587 5.24167 5.28469 5.31271 5.36122 5.42295 5.47505 5.59604 5.63224 5.68237 5.70681 5.79560 5.82094 5.91781 5.99122 6.04605 6.20459 6.24308 6.36496 6.44737 6.57914 6.64452 6.84034 6.93076 7.05191 7.27105 7.34887 7.44946 7.75632 7.83486 7.87679 7.95695 8.24968 8.56616 8.95276 9.58008 11.05596 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012591 B = 0.003263 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.216372 B = 8579.384845 C =10133.290365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.133 4.133 3 C 0.096 3.904 4 N -0.487 5.487 5 C 0.089 3.911 6 C -0.145 4.145 7 C -0.044 4.044 8 C 0.106 3.894 9 O -0.371 6.371 10 C 0.458 3.542 11 O -0.464 6.464 12 C -0.094 4.094 13 C 0.076 3.924 14 H 0.074 0.926 15 C -0.501 4.501 16 H 0.053 0.947 17 C 0.080 3.920 18 N -0.879 5.879 19 Si 0.887 3.113 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.286 1.286 23 C -0.022 4.022 24 C -0.114 4.114 25 C -0.131 4.131 26 C -0.153 4.153 27 C -0.128 4.128 28 C -0.117 4.117 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.155 0.845 33 H 0.156 0.844 34 H 0.147 0.853 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.260 0.740 40 H 0.114 0.886 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.983 11.685 -2.209 13.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.135 4.135 3 C -0.061 4.061 4 N -0.195 5.195 5 C -0.068 4.068 6 C -0.165 4.165 7 C -0.052 4.052 8 C 0.032 3.968 9 O -0.291 6.291 10 C 0.299 3.701 11 O -0.346 6.346 12 C -0.132 4.132 13 C 0.057 3.943 14 H 0.092 0.908 15 C -0.539 4.539 16 H 0.072 0.928 17 C -0.124 4.124 18 N -0.515 5.515 19 Si 0.715 3.285 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.212 1.212 23 C -0.023 4.023 24 C -0.133 4.133 25 C -0.149 4.149 26 C -0.172 4.172 27 C -0.146 4.146 28 C -0.135 4.135 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.172 0.828 33 H 0.174 0.826 34 H 0.165 0.835 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.070 0.930 40 H 0.132 0.868 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.124 0.876 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.855 12.343 -2.283 14.302 hybrid contribution -1.296 -1.013 0.960 1.904 sum 5.560 11.330 -1.323 12.689 Atomic orbital electron populations 1.20796 0.90054 1.03516 1.03030 1.20665 0.97644 0.93207 1.01950 1.22581 0.89946 0.97044 0.96520 1.67642 1.08283 1.31632 1.11970 1.22767 1.00392 0.87568 0.96036 1.22094 0.94539 1.00166 0.99696 1.20012 0.94439 0.93685 0.97044 1.21517 0.90033 0.81917 1.03309 1.86478 1.40728 1.16060 1.85801 1.24044 0.90278 0.82566 0.73217 1.90732 1.16943 1.84881 1.42068 1.21637 0.97048 0.91575 1.02908 1.17918 0.91098 0.84235 1.01036 0.90799 1.20760 1.01260 1.38924 0.92912 0.92837 1.24816 0.97405 0.94344 0.95807 1.69915 1.18704 1.35510 1.27405 0.86626 0.80696 0.77485 0.83681 1.19864 1.20957 1.21187 1.20596 0.92267 0.98019 0.91414 1.20958 0.95810 0.97665 0.98822 1.20982 0.99934 0.96300 0.97702 1.20817 1.00470 1.00256 0.95614 1.20985 0.96886 0.98046 0.98678 1.21075 0.98404 0.95632 0.98438 0.90489 0.90893 0.90929 0.82779 0.82637 0.83510 0.89530 0.89644 0.90295 0.89231 0.93015 0.86793 0.87565 0.87729 0.87562 0.86784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 9.66 36.00 0.35 -0.65 16 2 C -0.13 -1.44 5.90 -104.49 -0.62 -2.06 16 3 C 0.10 1.03 10.86 -17.55 -0.19 0.84 16 4 N -0.49 -5.92 10.36 -13.25 -0.14 -6.05 16 5 C 0.09 0.98 11.18 -17.55 -0.20 0.79 16 6 C -0.15 -1.72 9.45 -39.44 -0.37 -2.10 16 7 C -0.04 -0.55 5.92 -104.32 -0.62 -1.16 16 8 C 0.11 1.49 4.67 36.00 0.17 1.66 16 9 O -0.37 -6.00 8.80 -39.26 -0.35 -6.34 16 10 C 0.46 8.90 7.71 36.01 0.28 9.17 16 11 O -0.46 -10.78 14.73 -18.75 -0.28 -11.06 16 12 C -0.09 -1.75 5.06 -27.88 -0.14 -1.89 16 13 C 0.08 1.73 1.67 -92.93 -0.16 1.58 16 14 H 0.07 1.93 6.98 -51.93 -0.36 1.56 16 15 C -0.50 -12.93 6.37 -34.44 -0.22 -13.15 16 16 H 0.05 1.38 7.82 -52.48 -0.41 0.97 16 17 C 0.08 2.18 5.45 -17.82 -0.10 2.09 16 18 N -0.88 -24.94 12.87 55.43 0.71 -24.23 16 19 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 20 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 C -0.02 -0.48 4.77 -104.62 -0.50 -0.98 16 24 C -0.11 -2.23 8.86 -39.58 -0.35 -2.58 16 25 C -0.13 -2.28 10.05 -39.58 -0.40 -2.67 16 26 C -0.15 -2.59 10.05 -39.58 -0.40 -2.99 16 27 C -0.13 -2.28 10.05 -39.59 -0.40 -2.68 16 28 C -0.12 -2.39 9.67 -39.59 -0.38 -2.77 16 29 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 30 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 31 H 0.07 0.65 6.78 -51.94 -0.35 0.30 16 32 H 0.15 1.22 8.06 -52.48 -0.42 0.79 16 33 H 0.16 1.30 8.06 -52.48 -0.42 0.88 16 34 H 0.15 1.66 7.10 -52.49 -0.37 1.29 16 35 H 0.09 1.24 8.13 -51.93 -0.42 0.81 16 36 H 0.09 1.17 7.58 -51.93 -0.39 0.78 16 37 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.09 1.55 7.77 -51.93 -0.40 1.15 16 39 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.11 2.13 7.76 -52.48 -0.41 1.72 16 41 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 42 H 0.10 1.47 8.06 -52.48 -0.42 1.05 16 43 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 44 H 0.11 2.33 7.95 -52.49 -0.42 1.92 16 LS Contribution 375.82 15.07 5.66 5.66 Total: -1.00 -31.12 375.82 -9.70 -40.82 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -6.06 Total: 4.25 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: -4.24 Total: -19.57 kcal Atomic # 7 Polarization: -30.86 SS G_CDS: 0.58 Total: -30.28 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.62 Total: -17.41 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.12 -9.70 -40.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859674355.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.543 kcal (2) G-P(sol) polarization free energy of solvation -31.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds