Wall clock time and date at job start Tue Mar 31 2020 14:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38227 * 120.42182 * 2 1 4 4 N 1.31856 * 120.76717 * 179.97438 * 3 2 1 5 5 C 1.31880 * 121.72367 * 359.97438 * 4 3 2 6 6 C 1.38184 * 120.76821 * 0.02562 * 5 4 3 7 7 C 1.38624 * 120.41834 * 179.97438 * 2 1 3 8 8 C 1.50695 * 120.79103 * 0.02562 * 7 2 1 9 9 O 1.45203 * 109.47162 * 180.02562 * 8 7 2 10 10 C 1.34232 * 116.99955 * 180.02562 * 9 8 7 11 11 O 1.20832 * 120.00175 * 359.97438 * 10 9 8 12 12 C 1.50700 * 120.00016 * 180.02562 * 10 9 8 13 13 C 1.53002 * 109.47059 * 179.97438 * 12 10 9 14 14 H 1.08997 * 109.47059 * 54.99868 * 13 12 10 15 15 C 1.50697 * 109.47470 * 294.99717 * 13 12 10 16 16 H 1.08009 * 119.99503 * 325.83639 * 15 13 12 17 17 C 1.37871 * 120.00286 * 145.82853 * 15 13 12 18 18 N 1.31516 * 120.00201 * 6.12673 * 17 15 13 19 19 Si 1.86805 * 119.99869 * 186.11921 * 17 15 13 20 20 H 1.48497 * 109.47316 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.46974 * 120.00546 * 19 17 15 22 22 H 1.48503 * 109.46982 * 240.00220 * 19 17 15 23 23 C 1.50698 * 109.47140 * 174.99307 * 13 12 10 24 24 C 1.38240 * 119.99776 * 63.47497 * 23 13 12 25 25 C 1.38232 * 120.00238 * 179.80960 * 24 23 13 26 26 C 1.38238 * 119.99586 * 0.39675 * 25 24 23 27 27 C 1.38229 * 120.00134 * 359.85528 * 26 25 24 28 28 C 1.38232 * 120.00180 * 359.95484 * 27 26 25 29 29 H 1.09009 * 109.47082 * 270.02710 * 1 2 3 30 30 H 1.09003 * 109.46955 * 30.01844 * 1 2 3 31 31 H 1.08989 * 109.47444 * 150.02338 * 1 2 3 32 32 H 1.08003 * 119.61969 * 0.02562 * 3 2 1 33 33 H 1.08008 * 119.62042 * 179.97438 * 5 4 3 34 34 H 1.07993 * 120.41991 * 179.97438 * 6 5 4 35 35 H 1.08999 * 109.47050 * 300.02060 * 8 7 2 36 36 H 1.08998 * 109.47222 * 60.02243 * 8 7 2 37 37 H 1.08997 * 109.46674 * 299.99289 * 12 10 9 38 38 H 1.08995 * 109.47558 * 59.99912 * 12 10 9 39 39 H 0.96997 * 120.00247 * 180.02562 * 18 17 15 40 40 H 1.08004 * 119.99973 * 359.97438 * 24 23 13 41 41 H 1.08000 * 120.00535 * 180.22529 * 25 24 23 42 42 H 1.08008 * 119.99602 * 179.83792 * 26 25 24 43 43 H 1.08005 * 120.00177 * 179.97438 * 27 26 25 44 44 H 1.07997 * 120.00214 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.1999 0.0005 5 6 4.2256 0.0823 0.0015 6 6 3.5948 -1.1471 0.0016 7 6 2.2088 -1.1954 0.0005 8 6 1.4831 -2.5161 0.0005 9 8 2.4497 -3.5996 0.0018 10 6 1.9629 -4.8505 0.0014 11 8 0.7686 -5.0341 0.0006 12 6 2.9059 -6.0260 0.0032 13 6 2.0999 -7.3265 0.0030 14 1 1.4084 -7.3252 -0.8396 15 6 1.3234 -7.4365 1.2898 16 1 1.7410 -7.0487 2.2073 17 6 0.0798 -8.0318 1.2959 18 7 -0.3776 -8.6105 0.2071 19 14 -0.9553 -8.0167 2.8509 20 1 -0.2197 -7.3075 3.9284 21 1 -2.2380 -7.3174 2.5848 22 1 -1.2314 -9.4127 3.2753 23 6 3.0384 -8.4992 -0.1192 24 6 3.9635 -8.7508 0.8767 25 6 4.8218 -9.8288 0.7666 26 6 4.7604 -10.6504 -0.3434 27 6 3.8389 -10.3958 -1.3417 28 6 2.9780 -9.3201 -1.2297 29 1 -0.3634 0.0005 1.0278 30 1 -0.3633 0.8899 -0.5141 31 1 -0.3634 -0.8901 -0.5134 32 1 1.6676 2.1277 0.0004 33 1 5.3047 0.1285 0.0015 34 1 4.1737 -2.0587 0.0020 35 1 0.8572 -2.5867 0.8901 36 1 0.8584 -2.5874 -0.8898 37 1 3.5353 -5.9882 -0.8859 38 1 3.5328 -5.9877 0.8940 39 1 -1.2526 -9.0290 0.2113 40 1 4.0139 -8.1066 1.7422 41 1 5.5421 -10.0275 1.5463 42 1 5.4328 -11.4912 -0.4307 43 1 3.7912 -11.0375 -2.2092 44 1 2.2583 -9.1210 -2.0099 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859674355.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:28 Heat of formation + Delta-G solvation = -51.893390 kcal Electronic energy + Delta-G solvation = -26401.755339 eV Core-core repulsion = 22668.982170 eV Total energy + Delta-G solvation = -3732.773170 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.66192 -40.99786 -39.86494 -37.66537 -35.84115 -35.07627 -33.50730 -33.12336 -31.49702 -30.65273 -28.98765 -27.96257 -27.36241 -24.82850 -23.68796 -23.14058 -22.53969 -22.03065 -20.95122 -18.71324 -18.53514 -18.05116 -17.52389 -17.35640 -17.06371 -16.62774 -16.26277 -15.95012 -15.70102 -15.57011 -15.39994 -14.69548 -14.42205 -14.29961 -14.17020 -13.98768 -13.69874 -13.64409 -13.60855 -13.54301 -13.21733 -12.95733 -12.89040 -12.61651 -12.47892 -12.39254 -11.93048 -11.83297 -11.73211 -11.40131 -11.24103 -10.96437 -10.49119 -10.47555 -10.46054 -9.86986 -9.53338 -9.21046 -8.08363 -6.12186 0.12058 0.18753 0.78805 0.82846 1.34977 1.38475 1.45904 1.47586 1.70665 2.43601 2.77842 3.17246 3.33005 3.41748 3.58225 3.83295 3.87963 4.00316 4.10928 4.14271 4.23962 4.31317 4.35988 4.39039 4.52510 4.55565 4.56119 4.68477 4.71822 4.73070 4.85228 4.89465 4.95661 4.99821 5.10964 5.18869 5.33991 5.37050 5.48099 5.56946 5.59817 5.73964 5.75951 5.84841 5.94153 6.13605 6.37374 6.46172 6.95780 6.98032 7.03759 7.52206 9.01166 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012591 B = 0.003263 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.216372 B = 8579.384845 C =10133.290365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.133 4.133 3 C 0.094 3.906 4 N -0.504 5.504 5 C 0.086 3.914 6 C -0.155 4.155 7 C -0.061 4.061 8 C 0.107 3.893 9 O -0.360 6.360 10 C 0.464 3.536 11 O -0.510 6.510 12 C -0.090 4.090 13 C 0.079 3.921 14 H 0.031 0.969 15 C -0.495 4.495 16 H 0.051 0.949 17 C 0.028 3.972 18 N -0.914 5.914 19 Si 0.933 3.067 20 H -0.266 1.266 21 H -0.290 1.290 22 H -0.283 1.283 23 C -0.046 4.046 24 C -0.127 4.127 25 C -0.127 4.127 26 C -0.147 4.147 27 C -0.129 4.129 28 C -0.141 4.141 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.183 0.817 33 H 0.181 0.819 34 H 0.149 0.851 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.255 0.745 40 H 0.117 0.883 41 H 0.140 0.860 42 H 0.143 0.857 43 H 0.132 0.868 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.162 12.102 -1.465 15.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.135 4.135 3 C -0.063 4.063 4 N -0.213 5.213 5 C -0.069 4.069 6 C -0.174 4.174 7 C -0.069 4.069 8 C 0.033 3.967 9 O -0.278 6.278 10 C 0.307 3.693 11 O -0.396 6.396 12 C -0.127 4.127 13 C 0.060 3.940 14 H 0.049 0.951 15 C -0.532 4.532 16 H 0.069 0.931 17 C -0.171 4.171 18 N -0.553 5.553 19 Si 0.761 3.239 20 H -0.190 1.190 21 H -0.216 1.216 22 H -0.209 1.209 23 C -0.046 4.046 24 C -0.145 4.145 25 C -0.145 4.145 26 C -0.164 4.164 27 C -0.147 4.147 28 C -0.159 4.159 29 H 0.102 0.898 30 H 0.114 0.886 31 H 0.082 0.918 32 H 0.200 0.800 33 H 0.198 0.802 34 H 0.166 0.834 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.064 0.936 40 H 0.135 0.865 41 H 0.158 0.842 42 H 0.161 0.839 43 H 0.150 0.850 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 9.070 12.782 -1.526 15.748 hybrid contribution -1.865 -1.079 0.686 2.262 sum 7.205 11.703 -0.841 13.769 Atomic orbital electron populations 1.20855 0.88582 1.04256 1.03670 1.20894 0.98776 0.92669 1.01113 1.23056 0.89731 0.98008 0.95466 1.67708 1.09070 1.32057 1.12461 1.23140 1.01608 0.86949 0.95250 1.22190 0.94354 1.00765 1.00128 1.20008 0.94945 0.93210 0.98761 1.21626 0.89900 0.81999 1.03146 1.86445 1.40891 1.15439 1.85018 1.24163 0.89606 0.83621 0.71931 1.90721 1.18773 1.85695 1.44423 1.21544 0.96680 0.89475 1.05034 1.17706 0.91238 0.87135 0.97899 0.95069 1.21050 1.01325 1.37002 0.93866 0.93123 1.25453 0.98819 0.94939 0.97887 1.70043 1.18823 1.37420 1.28992 0.85889 0.79249 0.77417 0.81395 1.18986 1.21634 1.20888 1.20440 0.93463 0.97817 0.92927 1.21067 0.96133 0.98913 0.98384 1.21374 0.99481 0.95010 0.98611 1.21276 0.99957 1.00710 0.94499 1.21288 0.96165 0.97210 1.00017 1.21108 0.99376 0.97122 0.98344 0.89809 0.88554 0.91822 0.79989 0.80200 0.83361 0.90065 0.89722 0.87664 0.87326 0.93573 0.86459 0.84182 0.83948 0.85040 0.88541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.85 9.66 71.24 0.69 -1.16 16 2 C -0.13 -2.72 5.90 -19.78 -0.12 -2.84 16 3 C 0.09 1.84 10.86 84.69 0.92 2.76 16 4 N -0.50 -11.38 10.36 -195.83 -2.03 -13.41 16 5 C 0.09 1.79 11.18 84.67 0.95 2.74 16 6 C -0.15 -3.54 9.45 22.36 0.21 -3.33 16 7 C -0.06 -1.50 5.92 -19.67 -0.12 -1.61 16 8 C 0.11 3.05 4.67 71.23 0.33 3.38 16 9 O -0.36 -11.68 8.80 -51.43 -0.45 -12.13 16 10 C 0.46 18.40 7.71 71.24 0.55 18.95 16 11 O -0.51 -24.73 14.73 21.95 0.32 -24.41 16 12 C -0.09 -3.37 5.06 29.85 0.15 -3.22 16 13 C 0.08 3.73 1.67 -12.29 -0.02 3.71 16 14 H 0.03 1.72 6.98 -2.39 -0.02 1.70 16 15 C -0.49 -26.11 6.37 25.60 0.16 -25.95 16 16 H 0.05 2.63 7.82 -2.91 -0.02 2.61 16 17 C 0.03 1.60 5.45 84.65 0.46 2.06 16 18 N -0.91 -54.15 12.87 21.45 0.28 -53.87 16 19 Si 0.93 45.10 29.54 68.60 2.03 47.13 16 20 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 21 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 22 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 23 C -0.05 -1.97 4.77 -19.87 -0.09 -2.07 16 24 C -0.13 -4.77 8.86 22.27 0.20 -4.57 16 25 C -0.13 -3.99 10.05 22.27 0.22 -3.77 16 26 C -0.15 -4.41 10.05 22.27 0.22 -4.19 16 27 C -0.13 -4.37 10.05 22.27 0.22 -4.14 16 28 C -0.14 -5.83 9.67 22.27 0.22 -5.62 16 29 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.10 1.07 8.09 -2.39 -0.02 1.05 16 31 H 0.06 1.13 6.78 -2.39 -0.02 1.11 16 32 H 0.18 2.36 8.06 -2.91 -0.02 2.34 16 33 H 0.18 2.65 8.06 -2.91 -0.02 2.63 16 34 H 0.15 3.25 7.10 -2.91 -0.02 3.23 16 35 H 0.08 2.39 8.13 -2.39 -0.02 2.37 16 36 H 0.08 2.41 7.58 -2.39 -0.02 2.39 16 37 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 38 H 0.11 3.66 7.77 -2.39 -0.02 3.64 16 39 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 40 H 0.12 4.22 7.76 -2.91 -0.02 4.20 16 41 H 0.14 3.44 8.06 -2.91 -0.02 3.41 16 42 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 43 H 0.13 3.70 8.06 -2.91 -0.02 3.67 16 44 H 0.10 4.19 7.95 -2.91 -0.02 4.17 16 Total: -1.00 -69.47 375.82 6.30 -63.17 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 1.00 Total: 22.41 kcal Atomic # 6 Polarization: -34.05 SS G_CDS: 5.16 Total: -28.89 kcal Atomic # 7 Polarization: -65.53 SS G_CDS: -1.75 Total: -67.28 kcal Atomic # 8 Polarization: -36.41 SS G_CDS: -0.13 Total: -36.54 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -69.47 6.30 -63.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859674355.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.274 kcal (2) G-P(sol) polarization free energy of solvation -69.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds