Wall clock time and date at job start Tue Mar 31 2020 14:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38234 * 120.41708 * 2 1 4 4 N 1.31853 * 120.76184 * 179.97438 * 3 2 1 5 5 C 1.31885 * 121.72927 * 359.97438 * 4 3 2 6 6 C 1.38183 * 120.76065 * 359.73023 * 5 4 3 7 7 C 1.38625 * 120.42501 * 179.97438 * 2 1 3 8 8 C 1.50702 * 120.78386 * 359.97438 * 7 2 1 9 9 O 1.45199 * 109.46718 * 180.02562 * 8 7 2 10 10 C 1.34231 * 116.99861 * 180.02562 * 9 8 7 11 11 O 1.20825 * 119.99935 * 359.97438 * 10 9 8 12 12 C 1.50708 * 120.00150 * 179.97438 * 10 9 8 13 13 C 1.52996 * 109.46908 * 180.02562 * 12 10 9 14 14 H 1.09003 * 109.47262 * 304.99977 * 13 12 10 15 15 C 1.50697 * 109.47253 * 65.00194 * 13 12 10 16 16 H 1.07997 * 120.00438 * 26.93969 * 15 13 12 17 17 C 1.37882 * 119.99838 * 206.93733 * 15 13 12 18 18 N 1.31515 * 119.99950 * 186.61656 * 17 15 13 19 19 Si 1.86800 * 119.99904 * 6.89639 * 17 15 13 20 20 H 1.48506 * 109.47129 * 274.24829 * 19 17 15 21 21 H 1.48500 * 109.47565 * 34.24890 * 19 17 15 22 22 H 1.48504 * 109.47137 * 154.25109 * 19 17 15 23 23 C 1.50702 * 109.46850 * 185.00273 * 13 12 10 24 24 C 1.38239 * 119.99938 * 297.93536 * 23 13 12 25 25 C 1.38233 * 120.00026 * 179.78971 * 24 23 13 26 26 C 1.38230 * 119.99954 * 0.43738 * 25 24 23 27 27 C 1.38239 * 120.00054 * 359.81860 * 26 25 24 28 28 C 1.38233 * 120.00197 * 118.21398 * 23 13 12 29 29 H 1.09004 * 109.47423 * 270.02285 * 1 2 3 30 30 H 1.08997 * 109.47556 * 30.01977 * 1 2 3 31 31 H 1.09002 * 109.47027 * 150.02348 * 1 2 3 32 32 H 1.07996 * 119.62117 * 359.97438 * 3 2 1 33 33 H 1.08003 * 119.61795 * 179.97438 * 5 4 3 34 34 H 1.08000 * 120.41552 * 180.26283 * 6 5 4 35 35 H 1.09003 * 109.47178 * 60.00137 * 8 7 2 36 36 H 1.09001 * 109.47264 * 299.99732 * 8 7 2 37 37 H 1.08993 * 109.46654 * 59.99919 * 12 10 9 38 38 H 1.08996 * 109.47027 * 300.00103 * 12 10 9 39 39 H 0.97001 * 119.99552 * 180.27438 * 18 17 15 40 40 H 1.08004 * 119.99421 * 0.02562 * 24 23 13 41 41 H 1.08005 * 120.00039 * 180.27989 * 25 24 23 42 42 H 1.08005 * 120.00375 * 179.83526 * 26 25 24 43 43 H 1.08004 * 119.99592 * 179.97438 * 27 26 25 44 44 H 1.07996 * 120.00232 * 359.97388 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2068 1.1921 0.0000 4 7 3.5253 1.2000 0.0005 5 6 4.2256 0.0825 0.0015 6 6 3.5948 -1.1469 0.0077 7 6 2.2090 -1.1954 0.0005 8 6 1.4831 -2.5161 0.0017 9 8 2.4498 -3.5995 0.0027 10 6 1.9631 -4.8504 0.0032 11 8 0.7689 -5.0340 0.0034 12 6 2.9062 -6.0260 0.0037 13 6 2.1002 -7.3264 0.0037 14 1 1.4075 -7.3246 0.8453 15 6 1.3255 -7.4373 -1.2842 16 1 1.6888 -6.9494 -2.1766 17 6 0.1530 -8.1617 -1.3233 18 7 -0.4545 -8.3680 -2.4713 19 14 -0.5767 -8.8433 0.2554 20 1 0.0409 -10.1595 0.5584 21 1 -0.3081 -7.9018 1.3720 22 1 -2.0431 -9.0108 0.0911 23 6 3.0386 -8.4990 0.1280 24 6 3.9845 -8.7342 -0.8523 25 6 4.8482 -9.8073 -0.7361 26 6 4.7600 -10.6504 0.3558 27 6 3.8106 -10.4183 1.3334 28 6 2.9497 -9.3427 1.2193 29 1 -0.3634 0.0004 1.0277 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6675 2.1277 -0.0004 33 1 5.3047 0.1288 0.0015 34 1 4.1738 -2.0586 0.0128 35 1 0.8575 -2.5876 -0.8880 36 1 0.8582 -2.5865 0.8920 37 1 3.5344 -5.9874 0.8936 38 1 3.5343 -5.9882 -0.8863 39 1 -1.2815 -8.8743 -2.4982 40 1 4.0512 -8.0773 -1.7069 41 1 5.5902 -9.9884 -1.4997 42 1 5.4330 -11.4903 0.4453 43 1 3.7415 -11.0773 2.1863 44 1 2.2081 -9.1614 1.9831 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859674356.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:31 Heat of formation + Delta-G solvation = -34.001632 kcal Electronic energy + Delta-G solvation = -26460.464029 eV Core-core repulsion = 22728.466704 eV Total energy + Delta-G solvation = -3731.997325 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.60062 -39.79571 -38.62662 -36.32248 -34.25698 -34.15039 -32.28279 -31.79108 -30.27586 -29.38503 -28.00461 -27.02518 -25.98904 -23.17689 -22.58857 -21.95337 -21.64458 -20.73240 -19.28634 -17.36993 -17.11666 -17.03428 -16.36466 -16.14769 -15.92599 -15.32693 -15.12112 -14.63927 -14.51704 -14.27945 -13.91356 -13.53224 -13.39712 -13.06973 -12.94642 -12.85805 -12.78220 -12.67814 -12.41674 -12.07670 -12.04862 -11.94254 -11.51767 -11.28820 -10.89090 -10.60895 -10.59227 -10.45194 -10.05183 -9.79537 -9.62883 -9.60130 -9.50967 -9.22262 -9.05826 -8.56808 -8.27171 -7.90994 -6.09934 -4.07944 0.96054 1.08336 2.03151 2.07461 2.91383 2.98119 3.32988 3.38663 3.39867 3.63181 4.30993 4.42521 4.43800 4.48505 4.64115 4.73700 4.85507 5.17713 5.22190 5.25614 5.34723 5.41055 5.42273 5.46058 5.50071 5.55183 5.61941 5.67318 5.80004 5.80569 5.84523 5.90500 5.97313 6.15727 6.19887 6.24202 6.41053 6.56379 6.61161 6.72950 6.89927 6.91333 7.08524 7.18827 7.47592 7.60773 7.72618 7.82246 8.38778 8.45124 8.88592 9.53295 11.02774 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014682 B = 0.003183 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.656851 B = 8793.694225 C =10064.764717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.132 4.132 3 C 0.097 3.903 4 N -0.486 5.486 5 C 0.089 3.911 6 C -0.146 4.146 7 C -0.044 4.044 8 C 0.106 3.894 9 O -0.369 6.369 10 C 0.460 3.540 11 O -0.469 6.469 12 C -0.086 4.086 13 C 0.045 3.955 14 H 0.055 0.945 15 C -0.493 4.493 16 H 0.074 0.926 17 C 0.086 3.914 18 N -0.895 5.895 19 Si 0.866 3.134 20 H -0.272 1.272 21 H -0.261 1.261 22 H -0.290 1.290 23 C -0.041 4.041 24 C -0.100 4.100 25 C -0.126 4.126 26 C -0.147 4.147 27 C -0.124 4.124 28 C -0.137 4.137 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.155 0.845 33 H 0.156 0.844 34 H 0.147 0.853 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.264 0.736 40 H 0.121 0.879 41 H 0.112 0.888 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.885 11.165 6.818 15.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.134 4.134 3 C -0.060 4.060 4 N -0.195 5.195 5 C -0.067 4.067 6 C -0.165 4.165 7 C -0.052 4.052 8 C 0.032 3.968 9 O -0.288 6.288 10 C 0.301 3.699 11 O -0.352 6.352 12 C -0.124 4.124 13 C 0.026 3.974 14 H 0.073 0.927 15 C -0.530 4.530 16 H 0.092 0.908 17 C -0.117 4.117 18 N -0.532 5.532 19 Si 0.694 3.306 20 H -0.198 1.198 21 H -0.186 1.186 22 H -0.216 1.216 23 C -0.042 4.042 24 C -0.118 4.118 25 C -0.144 4.144 26 C -0.165 4.165 27 C -0.142 4.142 28 C -0.156 4.156 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.173 0.827 33 H 0.174 0.826 34 H 0.165 0.835 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.116 0.884 39 H 0.073 0.927 40 H 0.139 0.861 41 H 0.130 0.870 42 H 0.127 0.873 43 H 0.127 0.873 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 7.753 11.840 6.715 15.664 hybrid contribution -1.176 -1.368 0.630 1.910 sum 6.578 10.472 7.344 14.383 Atomic orbital electron populations 1.20801 0.90029 1.03661 1.02951 1.20666 0.97659 0.93188 1.01900 1.22587 0.89939 0.97055 0.96466 1.67642 1.08288 1.31633 1.11936 1.22768 1.00398 0.87558 0.96007 1.22084 0.94519 1.00172 0.99746 1.19993 0.94439 0.93636 0.97151 1.21551 0.89968 0.81807 1.03444 1.86458 1.40717 1.15941 1.85657 1.23941 0.90101 0.82746 0.73117 1.90715 1.17057 1.85030 1.42350 1.21427 0.96893 0.90508 1.03590 1.18317 0.92375 0.86235 1.00509 0.92654 1.20623 1.06092 1.32452 0.93860 0.90835 1.24869 0.96442 0.94803 0.95569 1.69887 1.18395 1.40159 1.24738 0.86974 0.78523 0.79732 0.85334 1.19794 1.18649 1.21642 1.20639 0.93621 0.97905 0.92002 1.20965 0.94846 0.97571 0.98397 1.21067 0.99684 0.95862 0.97754 1.20885 0.99897 1.00056 0.95688 1.20960 0.96517 0.97804 0.98940 1.21047 0.99644 0.96412 0.98451 0.90545 0.90838 0.90850 0.82749 0.82624 0.83529 0.89271 0.89655 0.89877 0.88421 0.92650 0.86110 0.87035 0.87297 0.87253 0.87325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 9.66 36.00 0.35 -0.64 16 2 C -0.13 -1.42 5.90 -104.48 -0.62 -2.03 16 3 C 0.10 1.02 10.86 -17.54 -0.19 0.83 16 4 N -0.49 -5.85 10.36 -13.25 -0.14 -5.99 16 5 C 0.09 0.97 11.18 -17.55 -0.20 0.78 16 6 C -0.15 -1.70 9.45 -39.44 -0.37 -2.07 16 7 C -0.04 -0.54 5.92 -104.32 -0.62 -1.16 16 8 C 0.11 1.46 4.67 36.01 0.17 1.63 16 9 O -0.37 -5.81 8.80 -39.26 -0.35 -6.15 16 10 C 0.46 8.70 7.71 36.01 0.28 8.98 16 11 O -0.47 -10.66 14.73 -18.75 -0.28 -10.93 16 12 C -0.09 -1.55 5.04 -27.88 -0.14 -1.69 16 13 C 0.04 0.97 1.21 -92.93 -0.11 0.86 16 14 H 0.06 1.29 4.87 -51.93 -0.25 1.04 16 15 C -0.49 -13.05 6.98 -34.44 -0.24 -13.29 16 16 H 0.07 2.10 8.06 -52.49 -0.42 1.68 16 17 C 0.09 2.45 5.47 -17.82 -0.10 2.35 16 18 N -0.89 -27.12 13.96 55.43 0.77 -26.35 16 19 Si 0.87 21.86 26.61 -169.99 -4.52 17.33 16 20 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.26 -6.38 6.29 56.52 0.36 -6.02 16 22 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 23 C -0.04 -0.83 4.52 -104.62 -0.47 -1.30 16 24 C -0.10 -1.87 8.86 -39.58 -0.35 -2.22 16 25 C -0.13 -2.07 10.05 -39.59 -0.40 -2.47 16 26 C -0.15 -2.33 10.05 -39.58 -0.40 -2.73 16 27 C -0.12 -2.08 10.05 -39.58 -0.40 -2.47 16 28 C -0.14 -2.61 9.08 -39.59 -0.36 -2.97 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 31 H 0.07 0.67 6.78 -51.93 -0.35 0.31 16 32 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.16 1.28 8.06 -52.48 -0.42 0.85 16 34 H 0.15 1.62 7.10 -52.49 -0.37 1.24 16 35 H 0.09 1.27 7.57 -51.93 -0.39 0.87 16 36 H 0.09 1.13 8.13 -51.93 -0.42 0.71 16 37 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.10 1.63 7.69 -51.93 -0.40 1.23 16 39 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 40 H 0.12 2.21 7.71 -52.48 -0.40 1.81 16 41 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 42 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 43 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 44 H 0.11 2.00 7.91 -52.49 -0.42 1.59 16 LS Contribution 370.42 15.07 5.58 5.58 Total: -1.00 -32.71 370.42 -9.09 -41.80 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -6.00 Total: 4.33 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: -4.17 Total: -19.62 kcal Atomic # 7 Polarization: -32.97 SS G_CDS: 0.64 Total: -32.34 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.62 Total: -17.09 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.52 Total: 17.33 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.71 -9.09 -41.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859674356.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.800 kcal (2) G-P(sol) polarization free energy of solvation -32.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds