Wall clock time and date at job start Tue Mar 31 2020 14:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38234 * 120.41708 * 2 1 4 4 N 1.31853 * 120.76184 * 179.97438 * 3 2 1 5 5 C 1.31885 * 121.72927 * 359.97438 * 4 3 2 6 6 C 1.38183 * 120.76065 * 359.73023 * 5 4 3 7 7 C 1.38625 * 120.42501 * 179.97438 * 2 1 3 8 8 C 1.50702 * 120.78386 * 359.97438 * 7 2 1 9 9 O 1.45199 * 109.46718 * 180.02562 * 8 7 2 10 10 C 1.34231 * 116.99861 * 180.02562 * 9 8 7 11 11 O 1.20825 * 119.99935 * 359.97438 * 10 9 8 12 12 C 1.50708 * 120.00150 * 179.97438 * 10 9 8 13 13 C 1.52996 * 109.46908 * 180.02562 * 12 10 9 14 14 H 1.09003 * 109.47262 * 304.99977 * 13 12 10 15 15 C 1.50697 * 109.47253 * 65.00194 * 13 12 10 16 16 H 1.07997 * 120.00438 * 26.93969 * 15 13 12 17 17 C 1.37882 * 119.99838 * 206.93733 * 15 13 12 18 18 N 1.31515 * 119.99950 * 186.61656 * 17 15 13 19 19 Si 1.86800 * 119.99904 * 6.89639 * 17 15 13 20 20 H 1.48506 * 109.47129 * 274.24829 * 19 17 15 21 21 H 1.48500 * 109.47565 * 34.24890 * 19 17 15 22 22 H 1.48504 * 109.47137 * 154.25109 * 19 17 15 23 23 C 1.50702 * 109.46850 * 185.00273 * 13 12 10 24 24 C 1.38239 * 119.99938 * 297.93536 * 23 13 12 25 25 C 1.38233 * 120.00026 * 179.78971 * 24 23 13 26 26 C 1.38230 * 119.99954 * 0.43738 * 25 24 23 27 27 C 1.38239 * 120.00054 * 359.81860 * 26 25 24 28 28 C 1.38233 * 120.00197 * 118.21398 * 23 13 12 29 29 H 1.09004 * 109.47423 * 270.02285 * 1 2 3 30 30 H 1.08997 * 109.47556 * 30.01977 * 1 2 3 31 31 H 1.09002 * 109.47027 * 150.02348 * 1 2 3 32 32 H 1.07996 * 119.62117 * 359.97438 * 3 2 1 33 33 H 1.08003 * 119.61795 * 179.97438 * 5 4 3 34 34 H 1.08000 * 120.41552 * 180.26283 * 6 5 4 35 35 H 1.09003 * 109.47178 * 60.00137 * 8 7 2 36 36 H 1.09001 * 109.47264 * 299.99732 * 8 7 2 37 37 H 1.08993 * 109.46654 * 59.99919 * 12 10 9 38 38 H 1.08996 * 109.47027 * 300.00103 * 12 10 9 39 39 H 0.97001 * 119.99552 * 180.27438 * 18 17 15 40 40 H 1.08004 * 119.99421 * 0.02562 * 24 23 13 41 41 H 1.08005 * 120.00039 * 180.27989 * 25 24 23 42 42 H 1.08005 * 120.00375 * 179.83526 * 26 25 24 43 43 H 1.08004 * 119.99592 * 179.97438 * 27 26 25 44 44 H 1.07996 * 120.00232 * 359.97388 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2068 1.1921 0.0000 4 7 3.5253 1.2000 0.0005 5 6 4.2256 0.0825 0.0015 6 6 3.5948 -1.1469 0.0077 7 6 2.2090 -1.1954 0.0005 8 6 1.4831 -2.5161 0.0017 9 8 2.4498 -3.5995 0.0027 10 6 1.9631 -4.8504 0.0032 11 8 0.7689 -5.0340 0.0034 12 6 2.9062 -6.0260 0.0037 13 6 2.1002 -7.3264 0.0037 14 1 1.4075 -7.3246 0.8453 15 6 1.3255 -7.4373 -1.2842 16 1 1.6888 -6.9494 -2.1766 17 6 0.1530 -8.1617 -1.3233 18 7 -0.4545 -8.3680 -2.4713 19 14 -0.5767 -8.8433 0.2554 20 1 0.0409 -10.1595 0.5584 21 1 -0.3081 -7.9018 1.3720 22 1 -2.0431 -9.0108 0.0911 23 6 3.0386 -8.4990 0.1280 24 6 3.9845 -8.7342 -0.8523 25 6 4.8482 -9.8073 -0.7361 26 6 4.7600 -10.6504 0.3558 27 6 3.8106 -10.4183 1.3334 28 6 2.9497 -9.3427 1.2193 29 1 -0.3634 0.0004 1.0277 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6675 2.1277 -0.0004 33 1 5.3047 0.1288 0.0015 34 1 4.1738 -2.0586 0.0128 35 1 0.8575 -2.5876 -0.8880 36 1 0.8582 -2.5865 0.8920 37 1 3.5344 -5.9874 0.8936 38 1 3.5343 -5.9882 -0.8863 39 1 -1.2815 -8.8743 -2.4982 40 1 4.0512 -8.0773 -1.7069 41 1 5.5902 -9.9884 -1.4997 42 1 5.4330 -11.4903 0.4453 43 1 3.7415 -11.0773 2.1863 44 1 2.2081 -9.1614 1.9831 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859674356.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:30 Heat of formation + Delta-G solvation = -51.219818 kcal Electronic energy + Delta-G solvation = -26461.210666 eV Core-core repulsion = 22728.466704 eV Total energy + Delta-G solvation = -3732.743961 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.71189 -41.04695 -40.01751 -37.74308 -35.93039 -35.08838 -33.80498 -33.15051 -31.62182 -30.75930 -29.08785 -28.11657 -27.52878 -24.65884 -23.71639 -23.29007 -22.55306 -22.10361 -20.87060 -19.11231 -18.73418 -18.10470 -17.58352 -17.46723 -17.09909 -16.69218 -16.27093 -15.95611 -15.76889 -15.54548 -15.43570 -14.83923 -14.61504 -14.35757 -14.25278 -14.11933 -13.94548 -13.78126 -13.65345 -13.59229 -13.35781 -13.05060 -12.91346 -12.77814 -12.40468 -12.15050 -11.97737 -11.91438 -11.86103 -11.56895 -11.28953 -11.06678 -10.69964 -10.47843 -10.47338 -9.87280 -9.63173 -9.34337 -8.26780 -6.24501 0.11624 0.18247 0.66668 0.70832 1.29592 1.32935 1.39462 1.39634 1.65366 2.35976 2.77392 3.04473 3.18621 3.39539 3.57760 3.80582 3.86213 3.98038 4.05750 4.08628 4.13033 4.24357 4.26093 4.31752 4.37393 4.47085 4.54942 4.58053 4.68219 4.72708 4.76335 4.83980 4.86018 4.92594 5.00899 5.15979 5.16676 5.31859 5.34814 5.37738 5.49614 5.62310 5.73514 5.75763 5.80037 5.99306 6.28957 6.33489 6.74937 6.94740 6.97857 7.38846 8.89991 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014682 B = 0.003183 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.656851 B = 8793.694225 C =10064.764717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.132 4.132 3 C 0.094 3.906 4 N -0.504 5.504 5 C 0.086 3.914 6 C -0.155 4.155 7 C -0.062 4.062 8 C 0.107 3.893 9 O -0.357 6.357 10 C 0.464 3.536 11 O -0.515 6.515 12 C -0.085 4.085 13 C 0.047 3.953 14 H 0.041 0.959 15 C -0.473 4.473 16 H 0.038 0.962 17 C 0.027 3.973 18 N -0.948 5.948 19 Si 0.916 3.084 20 H -0.260 1.260 21 H -0.252 1.252 22 H -0.297 1.297 23 C -0.064 4.064 24 C -0.117 4.117 25 C -0.125 4.125 26 C -0.139 4.139 27 C -0.125 4.125 28 C -0.155 4.155 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.061 0.939 32 H 0.183 0.817 33 H 0.181 0.819 34 H 0.149 0.851 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.120 0.880 38 H 0.109 0.891 39 H 0.261 0.739 40 H 0.113 0.887 41 H 0.140 0.860 42 H 0.147 0.853 43 H 0.140 0.860 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.053 11.059 8.624 17.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.134 4.134 3 C -0.063 4.063 4 N -0.213 5.213 5 C -0.070 4.070 6 C -0.174 4.174 7 C -0.070 4.070 8 C 0.033 3.967 9 O -0.275 6.275 10 C 0.307 3.693 11 O -0.402 6.402 12 C -0.122 4.122 13 C 0.028 3.972 14 H 0.059 0.941 15 C -0.511 4.511 16 H 0.056 0.944 17 C -0.170 4.170 18 N -0.589 5.589 19 Si 0.742 3.258 20 H -0.185 1.185 21 H -0.177 1.177 22 H -0.224 1.224 23 C -0.065 4.065 24 C -0.135 4.135 25 C -0.142 4.142 26 C -0.157 4.157 27 C -0.142 4.142 28 C -0.173 4.173 29 H 0.105 0.895 30 H 0.113 0.887 31 H 0.080 0.920 32 H 0.200 0.800 33 H 0.198 0.802 34 H 0.167 0.833 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.138 0.862 38 H 0.127 0.873 39 H 0.069 0.931 40 H 0.131 0.869 41 H 0.158 0.842 42 H 0.164 0.836 43 H 0.158 0.842 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 9.969 11.754 8.545 17.623 hybrid contribution -1.694 -1.248 0.056 2.105 sum 8.274 10.506 8.602 15.900 Atomic orbital electron populations 1.20858 0.88574 1.04173 1.03784 1.20897 0.98784 0.92674 1.01079 1.23057 0.89732 0.98013 0.95462 1.67706 1.09071 1.32083 1.12441 1.23144 1.01614 0.86956 0.95243 1.22188 0.94333 1.00784 1.00125 1.19999 0.94955 0.93187 0.98834 1.21655 0.89859 0.81924 1.03254 1.86430 1.40862 1.15360 1.84872 1.24152 0.89512 0.83828 0.71805 1.90700 1.18885 1.85828 1.44750 1.21403 0.96561 0.88351 1.05878 1.18177 0.92764 0.89194 0.97073 0.94117 1.20838 1.05789 1.29823 0.94603 0.94369 1.25573 0.97417 0.96096 0.97917 1.70028 1.19307 1.42825 1.26778 0.86177 0.77305 0.79801 0.82493 1.18478 1.17650 1.22405 1.20391 0.94687 0.97639 0.93736 1.21043 0.95644 0.98839 0.98022 1.21415 0.99330 0.94767 0.98729 1.21356 0.99526 1.00332 0.94467 1.21339 0.95653 0.97141 1.00105 1.21202 1.00579 0.97186 0.98321 0.89465 0.88693 0.91987 0.80001 0.80189 0.83292 0.90258 0.89322 0.86197 0.87299 0.93052 0.86863 0.84203 0.83570 0.84219 0.87324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.84 9.66 71.23 0.69 -1.15 16 2 C -0.13 -2.70 5.90 -19.77 -0.12 -2.82 16 3 C 0.09 1.83 10.86 84.69 0.92 2.75 16 4 N -0.50 -11.32 10.36 -195.84 -2.03 -13.35 16 5 C 0.09 1.77 11.18 84.67 0.95 2.72 16 6 C -0.15 -3.49 9.45 22.36 0.21 -3.28 16 7 C -0.06 -1.49 5.92 -19.67 -0.12 -1.61 16 8 C 0.11 2.99 4.67 71.24 0.33 3.33 16 9 O -0.36 -11.30 8.80 -51.42 -0.45 -11.75 16 10 C 0.46 17.80 7.71 71.24 0.55 18.35 16 11 O -0.52 -24.21 14.73 21.97 0.32 -23.89 16 12 C -0.08 -3.00 5.04 29.85 0.15 -2.85 16 13 C 0.05 2.06 1.21 -12.29 -0.01 2.04 16 14 H 0.04 1.91 4.87 -2.39 -0.01 1.90 16 15 C -0.47 -25.91 6.98 25.60 0.18 -25.74 16 16 H 0.04 2.30 8.06 -2.91 -0.02 2.28 16 17 C 0.03 1.59 5.47 84.66 0.46 2.05 16 18 N -0.95 -60.15 13.96 21.45 0.30 -59.85 16 19 Si 0.92 46.07 26.61 68.60 1.83 47.90 16 20 H -0.26 -12.39 7.11 99.48 0.71 -11.68 16 21 H -0.25 -12.12 6.29 99.48 0.63 -11.49 16 22 H -0.30 -15.11 7.11 99.48 0.71 -14.40 16 23 C -0.06 -2.53 4.52 -19.86 -0.09 -2.62 16 24 C -0.12 -4.27 8.86 22.27 0.20 -4.07 16 25 C -0.12 -3.72 10.05 22.27 0.22 -3.50 16 26 C -0.14 -3.79 10.05 22.27 0.22 -3.57 16 27 C -0.12 -3.70 10.05 22.27 0.22 -3.48 16 28 C -0.15 -5.58 9.08 22.27 0.20 -5.38 16 29 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.09 1.08 8.09 -2.39 -0.02 1.06 16 31 H 0.06 1.13 6.78 -2.39 -0.02 1.11 16 32 H 0.18 2.36 8.06 -2.91 -0.02 2.33 16 33 H 0.18 2.61 8.06 -2.91 -0.02 2.59 16 34 H 0.15 3.18 7.10 -2.91 -0.02 3.16 16 35 H 0.08 2.37 7.57 -2.39 -0.02 2.35 16 36 H 0.09 2.40 8.13 -2.39 -0.02 2.38 16 37 H 0.12 3.37 8.14 -2.39 -0.02 3.35 16 38 H 0.11 3.62 7.69 -2.39 -0.02 3.60 16 39 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 40 H 0.11 4.17 7.71 -2.91 -0.02 4.15 16 41 H 0.14 3.33 8.06 -2.91 -0.02 3.30 16 42 H 0.15 2.93 8.06 -2.91 -0.02 2.90 16 43 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 44 H 0.11 3.82 7.91 -2.91 -0.02 3.80 16 Total: -1.00 -73.73 370.42 6.06 -67.67 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: 0.92 Total: 22.10 kcal Atomic # 6 Polarization: -34.00 SS G_CDS: 5.17 Total: -28.83 kcal Atomic # 7 Polarization: -71.47 SS G_CDS: -1.73 Total: -73.20 kcal Atomic # 8 Polarization: -35.51 SS G_CDS: -0.13 Total: -35.64 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 1.83 Total: 47.90 kcal Total: -73.73 6.06 -67.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859674356.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.453 kcal (2) G-P(sol) polarization free energy of solvation -73.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds