Wall clock time and date at job start Tue Mar 31 2020 15:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47529 * 2 1 4 4 C 1.53001 * 109.47531 * 175.11556 * 3 2 1 5 5 H 1.08996 * 109.47177 * 305.19236 * 4 3 2 6 6 O 1.42898 * 109.46754 * 65.18898 * 4 3 2 7 7 C 1.42903 * 114.00308 * 253.40419 * 6 4 3 8 8 C 1.52993 * 109.47316 * 185.06994 * 7 6 4 9 9 C 1.50689 * 109.47167 * 185.18837 * 4 3 2 10 10 O 1.21297 * 120.00124 * 245.00201 * 9 4 3 11 11 N 1.34780 * 120.00268 * 65.00510 * 9 4 3 12 12 C 1.40091 * 120.00209 * 184.31419 * 11 9 4 13 13 C 1.38712 * 120.07479 * 333.23939 * 12 11 9 14 14 C 1.38182 * 120.01891 * 179.72760 * 13 12 11 15 15 C 1.38551 * 120.17807 * 0.27681 * 14 13 12 16 16 F 1.35103 * 119.92401 * 179.97438 * 15 14 13 17 17 C 1.38341 * 120.15688 * 0.02562 * 15 14 13 18 18 C 1.38747 * 119.97244 * 359.97438 * 17 15 14 19 19 O 1.35772 * 120.08846 * 180.02562 * 18 17 15 20 20 C 1.34807 * 116.99764 * 354.50444 * 19 18 17 21 21 H 1.08006 * 120.00225 * 5.07388 * 20 19 18 22 22 C 1.38636 * 120.00058 * 185.07574 * 20 19 18 23 23 N 1.31571 * 120.00063 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99932 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47300 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47073 * 120.00066 * 24 22 20 27 27 H 1.48497 * 109.46799 * 239.99745 * 24 22 20 28 28 H 1.08991 * 109.46832 * 299.99711 * 1 2 3 29 29 H 1.08999 * 109.47009 * 59.99894 * 1 2 3 30 30 H 1.08996 * 109.47244 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47238 * 239.99692 * 2 1 3 32 32 H 1.09008 * 109.46891 * 120.00286 * 2 1 3 33 33 H 1.09003 * 109.46569 * 55.11510 * 3 2 1 34 34 H 1.09003 * 109.47307 * 295.12369 * 3 2 1 35 35 H 1.09008 * 109.46690 * 305.06839 * 7 6 4 36 36 H 1.09000 * 109.47136 * 65.06511 * 7 6 4 37 37 H 1.09005 * 109.47443 * 179.97438 * 8 7 6 38 38 H 1.09002 * 109.47493 * 299.99760 * 8 7 6 39 39 H 1.09000 * 109.47412 * 59.99686 * 8 7 6 40 40 H 0.96994 * 119.99592 * 4.30562 * 11 9 4 41 41 H 1.07996 * 119.99089 * 0.02562 * 13 12 11 42 42 H 1.08005 * 119.91038 * 180.29907 * 14 13 12 43 43 H 1.07994 * 120.01422 * 179.97438 * 17 15 14 44 44 H 0.97002 * 120.00014 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5652 1.4442 0.1228 5 1 3.8592 0.8764 1.0055 6 8 4.1374 0.8449 -1.0414 7 6 4.6682 -0.4634 -0.8205 8 6 5.3629 -0.9534 -2.0925 9 6 4.0572 2.8627 0.2510 10 8 4.7495 3.3456 -0.6201 11 7 3.7280 3.5950 1.3336 12 6 4.1088 4.9409 1.4111 13 6 5.2311 5.3862 0.7282 14 6 5.6024 6.7152 0.8009 15 6 4.8597 7.6054 1.5595 16 9 5.2277 8.9036 1.6274 17 6 3.7427 7.1679 2.2486 18 6 3.3641 5.8349 2.1801 19 8 2.2679 5.4031 2.8549 20 6 1.6573 6.2924 3.6632 21 1 1.9936 7.3184 3.6891 22 6 0.5975 5.8900 4.4614 23 7 0.1874 4.6403 4.4295 24 14 -0.2492 7.1226 5.5809 25 1 0.3955 8.4520 5.4309 26 1 -1.6836 7.2241 5.2104 27 1 -0.1329 6.6718 6.9910 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6071 1.9808 0.8430 34 1 1.7499 1.9305 -0.9305 35 1 5.3884 -0.4300 -0.0030 36 1 3.8579 -1.1456 -0.5633 37 1 5.7682 -1.9512 -1.9240 38 1 4.6428 -0.9868 -2.9101 39 1 6.1732 -0.2712 -2.3498 40 1 3.2274 3.1900 2.0590 41 1 5.8121 4.6950 0.1357 42 1 6.4738 7.0610 0.2646 43 1 3.1657 7.8637 2.8395 44 1 -0.5539 4.3587 4.9882 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860057160.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:30 Heat of formation + Delta-G solvation = -138.654747 kcal Electronic energy + Delta-G solvation = -27933.369882 eV Core-core repulsion = 23766.065232 eV Total energy + Delta-G solvation = -4167.304649 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.25588 -40.36198 -39.01235 -37.79341 -36.23789 -34.84623 -34.00313 -32.43476 -31.67435 -29.76182 -29.25890 -27.91861 -25.56090 -24.69870 -23.00668 -22.40365 -21.57910 -21.19370 -20.01592 -18.38996 -18.03536 -17.21348 -16.98071 -16.37240 -15.91520 -15.25035 -15.16043 -15.03903 -14.88987 -14.76198 -14.31927 -14.14938 -13.85484 -13.54952 -13.51368 -13.22114 -13.17148 -12.81618 -12.38961 -12.32972 -12.23302 -12.03048 -11.93404 -11.69017 -11.45863 -11.26189 -11.24336 -11.07588 -10.99108 -10.73748 -10.62071 -10.54251 -9.94157 -9.80602 -9.67259 -9.02836 -8.97490 -7.90177 -7.11600 -6.63717 -4.21187 1.78217 2.10222 2.82637 3.03683 3.06176 3.10143 3.11806 3.81948 3.92348 4.31931 4.67152 4.78078 4.81908 4.88000 4.93856 4.95480 5.05166 5.09538 5.10648 5.21122 5.27575 5.45395 5.54243 5.59908 5.70352 5.73295 5.77812 5.81264 5.87600 5.99262 6.01317 6.12468 6.18318 6.19544 6.31538 6.55319 6.70741 6.88994 6.94702 7.00216 7.06712 7.18550 7.63883 7.80049 7.87853 8.48407 8.82757 9.43007 10.53357 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009868 B = 0.004208 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2836.782583 B = 6651.957096 C = 9229.456799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.134 4.134 4 C 0.080 3.920 5 H 0.088 0.912 6 O -0.354 6.354 7 C 0.052 3.948 8 C -0.150 4.150 9 C 0.503 3.497 10 O -0.516 6.516 11 N -0.645 5.645 12 C 0.061 3.939 13 C -0.063 4.063 14 C -0.227 4.227 15 C 0.127 3.873 16 F -0.152 7.152 17 C -0.258 4.258 18 C 0.157 3.843 19 O -0.170 6.170 20 C -0.392 4.392 21 H 0.095 0.905 22 C 0.044 3.956 23 N -0.859 5.859 24 Si 0.942 3.058 25 H -0.265 1.265 26 H -0.275 1.275 27 H -0.275 1.275 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.048 0.952 36 H 0.052 0.948 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.416 0.584 41 H 0.153 0.847 42 H 0.123 0.877 43 H 0.143 0.857 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.337 -10.113 -5.522 12.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.172 4.172 4 C 0.018 3.982 5 H 0.106 0.894 6 O -0.272 6.272 7 C -0.025 4.025 8 C -0.207 4.207 9 C 0.289 3.711 10 O -0.392 6.392 11 N -0.290 5.290 12 C -0.034 4.034 13 C -0.083 4.083 14 C -0.247 4.247 15 C 0.108 3.892 16 F -0.130 7.130 17 C -0.278 4.278 18 C 0.101 3.899 19 O -0.073 6.073 20 C -0.468 4.468 21 H 0.112 0.888 22 C -0.161 4.161 23 N -0.493 5.493 24 Si 0.766 3.234 25 H -0.190 1.190 26 H -0.200 1.200 27 H -0.200 1.200 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.253 0.747 41 H 0.171 0.829 42 H 0.141 0.859 43 H 0.161 0.839 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.509 -10.057 -6.222 12.657 hybrid contribution -0.703 0.683 1.265 1.600 sum 3.806 -9.374 -4.957 11.266 Atomic orbital electron populations 1.21763 0.95362 1.01446 1.02460 1.21523 0.96426 0.96009 1.01811 1.22050 0.92137 0.98444 1.04561 1.21928 0.94408 0.91579 0.90244 0.89428 1.88033 1.77493 1.30314 1.31324 1.22677 0.96892 0.84357 0.98568 1.21723 1.01050 1.00729 0.97238 1.20685 0.80946 0.88048 0.81434 1.90601 1.36697 1.71578 1.40284 1.43116 1.55725 1.09412 1.20724 1.16947 0.97174 0.82886 1.06351 1.21004 0.93966 0.95468 0.97856 1.20535 1.03747 0.93539 1.06907 1.17488 0.95339 0.77683 0.98735 1.91412 1.91319 1.35127 1.95178 1.20844 1.01012 0.96782 1.09208 1.18751 0.87398 0.90540 0.93242 1.83904 1.32884 1.39477 1.51015 1.21396 1.14146 0.91791 1.19427 0.88779 1.25265 0.96348 0.97260 0.97238 1.70008 1.25952 1.15529 1.37860 0.85626 0.79092 0.79507 0.79171 1.18960 1.20031 1.20017 0.92089 0.92672 0.92895 0.91687 0.92112 0.89379 0.90327 0.93362 0.92985 0.91239 0.91822 0.91676 0.74737 0.82942 0.85921 0.83930 0.91880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.91 37.16 0.37 -1.23 16 2 C -0.12 -1.27 5.07 -26.73 -0.14 -1.40 16 3 C -0.13 -1.74 4.89 -26.73 -0.13 -1.87 16 4 C 0.08 1.09 2.66 -27.89 -0.07 1.02 16 5 H 0.09 0.98 7.59 -51.93 -0.39 0.58 16 6 O -0.35 -4.97 9.22 -55.09 -0.51 -5.48 16 7 C 0.05 0.53 6.13 37.15 0.23 0.76 16 8 C -0.15 -1.34 10.28 37.15 0.38 -0.96 16 9 C 0.50 8.72 7.06 -10.99 -0.08 8.64 16 10 O -0.52 -10.45 13.48 -14.32 -0.19 -10.64 16 11 N -0.64 -11.73 5.15 -9.72 -0.05 -11.78 16 12 C 0.06 1.26 6.46 -83.45 -0.54 0.72 16 13 C -0.06 -1.23 8.78 -39.43 -0.35 -1.58 16 14 C -0.23 -4.28 10.02 -39.49 -0.40 -4.68 16 15 C 0.13 2.56 7.29 -39.43 -0.29 2.28 16 16 F -0.15 -2.92 17.26 2.25 0.04 -2.88 16 17 C -0.26 -5.61 9.14 -39.36 -0.36 -5.97 16 18 C 0.16 3.57 6.66 -38.93 -0.26 3.31 16 19 O -0.17 -4.33 9.19 0.05 0.00 -4.33 16 20 C -0.39 -10.14 9.49 30.88 0.29 -9.84 16 21 H 0.09 2.31 5.21 -52.48 -0.27 2.04 16 22 C 0.04 1.11 5.49 -17.52 -0.10 1.02 16 23 N -0.86 -22.79 13.67 55.48 0.76 -22.03 16 24 Si 0.94 19.38 29.55 -169.99 -5.02 14.36 16 25 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 26 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 27 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.66 6.97 -51.93 -0.36 0.30 16 32 H 0.06 0.58 8.14 -51.92 -0.42 0.15 16 33 H 0.09 1.22 7.89 -51.93 -0.41 0.81 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.05 0.46 8.04 -51.92 -0.42 0.04 16 36 H 0.05 0.45 6.64 -51.93 -0.34 0.11 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.42 7.20 8.23 -40.82 -0.34 6.86 16 41 H 0.15 2.95 5.60 -52.49 -0.29 2.65 16 42 H 0.12 2.01 8.06 -52.48 -0.42 1.58 16 43 H 0.14 3.10 5.64 -52.49 -0.30 2.80 16 44 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 LS Contribution 371.50 15.07 5.60 5.60 Total: -1.00 -29.53 371.50 -6.87 -36.41 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -6.07 Total: 10.56 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: -1.43 Total: -9.79 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.71 Total: -33.81 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.70 Total: -20.45 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.04 Total: -2.88 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.36 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.53 -6.87 -36.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860057160.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.247 kcal (2) G-P(sol) polarization free energy of solvation -29.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds