Wall clock time and date at job start Tue Mar 31 2020 15:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47529 * 2 1 4 4 C 1.53001 * 109.47531 * 175.11556 * 3 2 1 5 5 H 1.08996 * 109.47177 * 305.19236 * 4 3 2 6 6 O 1.42898 * 109.46754 * 65.18898 * 4 3 2 7 7 C 1.42903 * 114.00308 * 253.40419 * 6 4 3 8 8 C 1.52993 * 109.47316 * 185.06994 * 7 6 4 9 9 C 1.50689 * 109.47167 * 185.18837 * 4 3 2 10 10 O 1.21297 * 120.00124 * 245.00201 * 9 4 3 11 11 N 1.34780 * 120.00268 * 65.00510 * 9 4 3 12 12 C 1.40091 * 120.00209 * 184.31419 * 11 9 4 13 13 C 1.38712 * 120.07479 * 333.23939 * 12 11 9 14 14 C 1.38182 * 120.01891 * 179.72760 * 13 12 11 15 15 C 1.38551 * 120.17807 * 0.27681 * 14 13 12 16 16 F 1.35103 * 119.92401 * 179.97438 * 15 14 13 17 17 C 1.38341 * 120.15688 * 0.02562 * 15 14 13 18 18 C 1.38747 * 119.97244 * 359.97438 * 17 15 14 19 19 O 1.35772 * 120.08846 * 180.02562 * 18 17 15 20 20 C 1.34807 * 116.99764 * 354.50444 * 19 18 17 21 21 H 1.08006 * 120.00225 * 5.07388 * 20 19 18 22 22 C 1.38636 * 120.00058 * 185.07574 * 20 19 18 23 23 N 1.31571 * 120.00063 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99932 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47300 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47073 * 120.00066 * 24 22 20 27 27 H 1.48497 * 109.46799 * 239.99745 * 24 22 20 28 28 H 1.08991 * 109.46832 * 299.99711 * 1 2 3 29 29 H 1.08999 * 109.47009 * 59.99894 * 1 2 3 30 30 H 1.08996 * 109.47244 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47238 * 239.99692 * 2 1 3 32 32 H 1.09008 * 109.46891 * 120.00286 * 2 1 3 33 33 H 1.09003 * 109.46569 * 55.11510 * 3 2 1 34 34 H 1.09003 * 109.47307 * 295.12369 * 3 2 1 35 35 H 1.09008 * 109.46690 * 305.06839 * 7 6 4 36 36 H 1.09000 * 109.47136 * 65.06511 * 7 6 4 37 37 H 1.09005 * 109.47443 * 179.97438 * 8 7 6 38 38 H 1.09002 * 109.47493 * 299.99760 * 8 7 6 39 39 H 1.09000 * 109.47412 * 59.99686 * 8 7 6 40 40 H 0.96994 * 119.99592 * 4.30562 * 11 9 4 41 41 H 1.07996 * 119.99089 * 0.02562 * 13 12 11 42 42 H 1.08005 * 119.91038 * 180.29907 * 14 13 12 43 43 H 1.07994 * 120.01422 * 179.97438 * 17 15 14 44 44 H 0.97002 * 120.00014 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5652 1.4442 0.1228 5 1 3.8592 0.8764 1.0055 6 8 4.1374 0.8449 -1.0414 7 6 4.6682 -0.4634 -0.8205 8 6 5.3629 -0.9534 -2.0925 9 6 4.0572 2.8627 0.2510 10 8 4.7495 3.3456 -0.6201 11 7 3.7280 3.5950 1.3336 12 6 4.1088 4.9409 1.4111 13 6 5.2311 5.3862 0.7282 14 6 5.6024 6.7152 0.8009 15 6 4.8597 7.6054 1.5595 16 9 5.2277 8.9036 1.6274 17 6 3.7427 7.1679 2.2486 18 6 3.3641 5.8349 2.1801 19 8 2.2679 5.4031 2.8549 20 6 1.6573 6.2924 3.6632 21 1 1.9936 7.3184 3.6891 22 6 0.5975 5.8900 4.4614 23 7 0.1874 4.6403 4.4295 24 14 -0.2492 7.1226 5.5809 25 1 0.3955 8.4520 5.4309 26 1 -1.6836 7.2241 5.2104 27 1 -0.1329 6.6718 6.9910 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6071 1.9808 0.8430 34 1 1.7499 1.9305 -0.9305 35 1 5.3884 -0.4300 -0.0030 36 1 3.8579 -1.1456 -0.5633 37 1 5.7682 -1.9512 -1.9240 38 1 4.6428 -0.9868 -2.9101 39 1 6.1732 -0.2712 -2.3498 40 1 3.2274 3.1900 2.0590 41 1 5.8121 4.6950 0.1357 42 1 6.4738 7.0610 0.2646 43 1 3.1657 7.8637 2.8395 44 1 -0.5539 4.3587 4.9882 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860057160.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:29 Heat of formation + Delta-G solvation = -154.802714 kcal Electronic energy + Delta-G solvation = -27934.070110 eV Core-core repulsion = 23766.065232 eV Total energy + Delta-G solvation = -4168.004878 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.84903 -41.84044 -40.52676 -39.06586 -37.89032 -35.95539 -35.36188 -34.30634 -32.54900 -31.21027 -30.68079 -29.29134 -27.41058 -25.83439 -24.16844 -23.70806 -23.13316 -22.14275 -21.43181 -20.17640 -19.63513 -18.57676 -18.41513 -17.61972 -17.10670 -16.94677 -16.64279 -16.55908 -16.16697 -15.96187 -15.74687 -15.55357 -15.40274 -15.22874 -14.98624 -14.57113 -14.11340 -14.04801 -13.81794 -13.67662 -13.43405 -13.24041 -13.06654 -12.89318 -12.82343 -12.62329 -12.41110 -12.19165 -12.13534 -12.09948 -11.94166 -11.64859 -11.53796 -11.31947 -10.94115 -10.83194 -10.30517 -9.58764 -8.77891 -8.51054 -6.16774 0.14237 0.43077 1.38244 1.42435 1.43640 1.53593 1.80774 2.14070 2.64513 2.83228 3.04367 3.14060 3.42796 3.48232 3.77222 3.80906 3.94221 4.13068 4.15864 4.20454 4.22982 4.33892 4.39722 4.51439 4.58307 4.59710 4.67947 4.86567 4.90776 4.93371 4.99591 5.00804 5.06034 5.20037 5.20787 5.27114 5.29211 5.32165 5.33580 5.43522 5.48279 5.93054 5.99796 6.11506 6.43838 6.93521 7.04221 7.60255 8.69160 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009868 B = 0.004208 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2836.782583 B = 6651.957096 C = 9229.456799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.129 4.129 4 C 0.089 3.911 5 H 0.118 0.882 6 O -0.377 6.377 7 C 0.041 3.959 8 C -0.149 4.149 9 C 0.501 3.499 10 O -0.546 6.546 11 N -0.644 5.644 12 C 0.060 3.940 13 C -0.066 4.066 14 C -0.205 4.205 15 C 0.122 3.878 16 F -0.145 7.145 17 C -0.263 4.263 18 C 0.133 3.867 19 O -0.200 6.200 20 C -0.417 4.417 21 H 0.098 0.902 22 C -0.005 4.005 23 N -0.900 5.900 24 Si 1.009 2.991 25 H -0.259 1.259 26 H -0.270 1.270 27 H -0.267 1.267 28 H 0.046 0.954 29 H 0.049 0.951 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.095 0.905 38 H 0.060 0.940 39 H 0.050 0.950 40 H 0.419 0.581 41 H 0.161 0.839 42 H 0.156 0.844 43 H 0.137 0.863 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.133 -10.928 -5.680 13.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.168 4.168 4 C 0.028 3.972 5 H 0.135 0.865 6 O -0.295 6.295 7 C -0.034 4.034 8 C -0.206 4.206 9 C 0.290 3.710 10 O -0.423 6.423 11 N -0.289 5.289 12 C -0.035 4.035 13 C -0.086 4.086 14 C -0.224 4.224 15 C 0.102 3.898 16 F -0.123 7.123 17 C -0.284 4.284 18 C 0.079 3.921 19 O -0.105 6.105 20 C -0.492 4.492 21 H 0.115 0.885 22 C -0.205 4.205 23 N -0.537 5.537 24 Si 0.829 3.171 25 H -0.182 1.182 26 H -0.195 1.195 27 H -0.192 1.192 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.114 0.886 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.256 0.744 41 H 0.178 0.822 42 H 0.174 0.826 43 H 0.155 0.845 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.334 -10.881 -6.402 13.705 hybrid contribution -0.755 0.921 1.145 1.652 sum 4.580 -9.961 -5.256 12.158 Atomic orbital electron populations 1.21767 0.95391 1.02383 1.01543 1.21497 0.96324 0.94191 1.03053 1.21998 0.91752 1.00065 1.02955 1.21880 0.94390 0.89341 0.91578 0.86479 1.88018 1.77715 1.32215 1.31567 1.22982 0.97873 0.83013 0.99560 1.21756 1.00437 1.01758 0.96623 1.21465 0.79892 0.89357 0.80327 1.90568 1.38106 1.72576 1.41083 1.43208 1.55699 1.08660 1.21337 1.17216 0.96980 0.83903 1.05364 1.21180 0.93642 0.96072 0.97692 1.20907 1.03702 0.92770 1.05060 1.17476 0.95120 0.78248 0.98975 1.91429 1.91150 1.34601 1.95147 1.20927 1.01623 0.96485 1.09380 1.19065 0.87642 0.91444 0.93972 1.83886 1.34332 1.39926 1.52328 1.21762 1.14961 0.92273 1.20233 0.88464 1.26311 0.96652 0.99174 0.98357 1.70105 1.26941 1.17347 1.39266 0.84647 0.77909 0.77285 0.77211 1.18228 1.19458 1.19178 0.93444 0.93207 0.91008 0.90753 0.90402 0.90826 0.92132 0.92500 0.90898 0.88591 0.92105 0.93078 0.74382 0.82217 0.82604 0.84511 0.91552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 9.91 71.98 0.71 -2.34 16 2 C -0.11 -2.20 5.07 30.59 0.16 -2.05 16 3 C -0.13 -3.33 4.89 30.59 0.15 -3.18 16 4 C 0.09 2.35 2.66 29.84 0.08 2.43 16 5 H 0.12 2.37 7.59 -2.39 -0.02 2.35 16 6 O -0.38 -10.09 9.22 -129.99 -1.20 -11.28 16 7 C 0.04 0.75 6.13 71.98 0.44 1.20 16 8 C -0.15 -2.36 10.28 71.98 0.74 -1.62 16 9 C 0.50 17.31 7.06 87.65 0.62 17.93 16 10 O -0.55 -21.96 13.48 15.91 0.21 -21.74 16 11 N -0.64 -23.73 5.15 -303.04 -1.56 -25.29 16 12 C 0.06 2.52 6.46 38.23 0.25 2.77 16 13 C -0.07 -2.51 8.78 22.37 0.20 -2.31 16 14 C -0.20 -7.30 10.02 22.33 0.22 -7.08 16 15 C 0.12 4.76 7.29 22.37 0.16 4.93 16 16 F -0.14 -5.34 17.26 44.97 0.78 -4.56 16 17 C -0.26 -11.59 9.14 22.42 0.20 -11.38 16 18 C 0.13 6.19 6.66 22.69 0.15 6.34 16 19 O -0.20 -10.58 9.19 -22.75 -0.21 -10.79 16 20 C -0.42 -22.22 9.49 67.92 0.64 -21.58 16 21 H 0.10 4.92 5.21 -2.91 -0.02 4.91 16 22 C 0.00 -0.24 5.49 84.83 0.47 0.22 16 23 N -0.90 -49.05 13.67 21.61 0.30 -48.75 16 24 Si 1.01 40.00 29.55 68.60 2.03 42.02 16 25 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 26 H -0.27 -10.34 7.11 99.48 0.71 -9.64 16 27 H -0.27 -10.13 7.11 99.48 0.71 -9.43 16 28 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 1.33 6.97 -2.39 -0.02 1.31 16 32 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.07 2.10 7.89 -2.39 -0.02 2.08 16 34 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.06 0.94 8.04 -2.38 -0.02 0.92 16 36 H 0.07 1.03 6.64 -2.39 -0.02 1.01 16 37 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.42 14.92 8.23 -92.71 -0.76 14.15 16 41 H 0.16 5.98 5.60 -2.91 -0.02 5.96 16 42 H 0.16 4.54 8.06 -2.91 -0.02 4.51 16 43 H 0.14 6.09 5.64 -2.91 -0.02 6.07 16 44 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 Total: -1.00 -64.76 371.50 5.81 -58.95 By element: Atomic # 1 Polarization: 36.89 SS G_CDS: 0.27 Total: 37.16 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: 5.19 Total: -15.71 kcal Atomic # 7 Polarization: -72.78 SS G_CDS: -1.27 Total: -74.04 kcal Atomic # 8 Polarization: -42.63 SS G_CDS: -1.19 Total: -43.82 kcal Atomic # 9 Polarization: -5.34 SS G_CDS: 0.78 Total: -4.56 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.02 kcal Total: -64.76 5.81 -58.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860057160.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.856 kcal (2) G-P(sol) polarization free energy of solvation -64.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds