Wall clock time and date at job start Tue Mar 31 2020 15:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47472 * 2 1 4 4 C 1.52992 * 109.47486 * 185.00504 * 3 2 1 5 5 H 1.09007 * 109.47148 * 57.39388 * 4 3 2 6 6 O 1.42902 * 109.47478 * 297.39104 * 4 3 2 7 7 C 1.42897 * 114.00094 * 154.63075 * 6 4 3 8 8 C 1.52993 * 109.47070 * 175.01308 * 7 6 4 9 9 C 1.50700 * 109.47408 * 177.38910 * 4 3 2 10 10 O 1.21297 * 119.99942 * 120.00212 * 9 4 3 11 11 N 1.34775 * 119.99996 * 300.00615 * 9 4 3 12 12 C 1.40091 * 120.00076 * 174.47570 * 11 9 4 13 13 C 1.38705 * 120.07733 * 335.92629 * 12 11 9 14 14 C 1.38189 * 120.02488 * 179.69809 * 13 12 11 15 15 C 1.38557 * 120.17313 * 0.59882 * 14 13 12 16 16 F 1.35092 * 119.92293 * 179.69749 * 15 14 13 17 17 C 1.38341 * 120.15139 * 359.67698 * 15 14 13 18 18 C 1.38743 * 119.97744 * 0.02562 * 17 15 14 19 19 O 1.35783 * 120.08493 * 179.97438 * 18 17 15 20 20 C 1.34805 * 116.99803 * 6.24518 * 19 18 17 21 21 H 1.07996 * 120.00158 * 5.68101 * 20 19 18 22 22 C 1.38644 * 119.99715 * 185.67371 * 20 19 18 23 23 N 1.31572 * 119.99527 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00024 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47083 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46759 * 120.00104 * 24 22 20 27 27 H 1.48496 * 109.47087 * 240.00076 * 24 22 20 28 28 H 1.09004 * 109.46859 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46918 * 300.00086 * 1 2 3 30 30 H 1.08998 * 109.47061 * 59.99650 * 1 2 3 31 31 H 1.09003 * 109.46985 * 239.99978 * 2 1 3 32 32 H 1.08998 * 109.47061 * 120.00350 * 2 1 3 33 33 H 1.09005 * 109.46925 * 65.00766 * 3 2 1 34 34 H 1.09003 * 109.46870 * 305.01202 * 3 2 1 35 35 H 1.09004 * 109.47260 * 295.01307 * 7 6 4 36 36 H 1.09004 * 109.46984 * 55.01251 * 7 6 4 37 37 H 1.09004 * 109.47264 * 60.00114 * 8 7 6 38 38 H 1.09004 * 109.47434 * 179.97438 * 8 7 6 39 39 H 1.08996 * 109.46993 * 299.99768 * 8 7 6 40 40 H 0.96997 * 120.00357 * 354.47215 * 11 9 4 41 41 H 1.08004 * 119.99134 * 359.97438 * 13 12 11 42 42 H 1.07994 * 119.91537 * 180.29624 * 14 13 12 43 43 H 1.08000 * 120.01138 * 180.02562 * 17 15 14 44 44 H 0.97008 * 119.99449 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5648 1.4443 -0.1258 5 1 3.8551 0.9163 -1.0343 6 8 4.1373 0.7905 1.0086 7 6 5.4281 0.2280 0.7652 8 6 5.9946 -0.3327 2.0711 9 6 4.0619 2.8655 -0.1904 10 8 4.8307 3.2779 0.6523 11 7 3.6521 3.6782 -1.1843 12 6 4.0207 5.0298 -1.1809 13 6 4.3518 5.6570 0.0111 14 6 4.7213 6.9886 0.0124 15 6 4.7504 7.7044 -1.1737 16 9 5.1065 9.0075 -1.1657 17 6 4.4161 7.0875 -2.3659 18 6 4.0502 5.7493 -2.3753 19 8 3.7211 5.1418 -3.5442 20 6 3.8941 5.8555 -4.6747 21 1 4.3637 6.8271 -4.6334 22 6 3.4692 5.3420 -5.8904 23 7 2.8968 4.1584 -5.9406 24 14 3.7095 6.3306 -7.4571 25 1 4.3732 7.6188 -7.1326 26 1 4.5581 5.5615 -8.4024 27 1 2.3889 6.5970 -8.0817 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.7518 1.9297 0.9315 34 1 1.6053 1.9815 -0.8417 35 1 5.3426 -0.5742 0.0322 36 1 6.0948 1.0007 0.3821 37 1 5.3279 -1.1054 2.4542 38 1 6.9791 -0.7622 1.8855 39 1 6.0801 0.4694 2.8041 40 1 3.1020 3.3274 -1.9021 41 1 4.3252 5.1034 0.9380 42 1 4.9833 7.4739 0.9408 43 1 4.4400 7.6475 -3.2891 44 1 2.5992 3.7993 -6.7912 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860057161.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:32 Heat of formation + Delta-G solvation = -142.125410 kcal Electronic energy + Delta-G solvation = -27913.144114 eV Core-core repulsion = 23745.688965 eV Total energy + Delta-G solvation = -4167.455149 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.26952 -40.42208 -39.01843 -37.60077 -36.22093 -35.11109 -34.01561 -32.44501 -31.54133 -29.77031 -29.29392 -27.94231 -25.57147 -24.64238 -22.89721 -22.48019 -21.60064 -21.23577 -19.99756 -18.39698 -18.07286 -17.24180 -17.11047 -16.37598 -15.51327 -15.37345 -15.27363 -15.02629 -14.86281 -14.82256 -14.33514 -14.04779 -13.89445 -13.69643 -13.53978 -13.31108 -13.14467 -12.83222 -12.34917 -12.27298 -12.18638 -12.09646 -11.78006 -11.68165 -11.49025 -11.33341 -11.19086 -11.09421 -10.95311 -10.76498 -10.63799 -10.54665 -10.21362 -9.84947 -9.74707 -9.02405 -8.93485 -7.91482 -7.10531 -6.64751 -4.22002 1.74736 2.08404 2.85244 3.03202 3.05702 3.10975 3.25221 3.70476 3.81930 4.31196 4.62827 4.80358 4.83112 4.89234 4.92997 5.03729 5.04895 5.08097 5.15997 5.24611 5.36505 5.48626 5.53157 5.57164 5.67945 5.72374 5.76006 5.80500 5.90521 5.98970 6.01418 6.06863 6.14912 6.17632 6.26743 6.52208 6.69695 6.87906 6.92228 6.99723 7.05180 7.15975 7.61475 7.78914 7.86111 8.44875 8.81708 9.41922 10.52496 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009622 B = 0.003979 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2909.436569 B = 7035.020406 C = 8763.360843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.112 4.112 4 C 0.079 3.921 5 H 0.088 0.912 6 O -0.355 6.355 7 C 0.054 3.946 8 C -0.147 4.147 9 C 0.483 3.517 10 O -0.521 6.521 11 N -0.645 5.645 12 C 0.063 3.937 13 C -0.062 4.062 14 C -0.225 4.225 15 C 0.126 3.874 16 F -0.151 7.151 17 C -0.256 4.256 18 C 0.155 3.845 19 O -0.171 6.171 20 C -0.391 4.391 21 H 0.095 0.905 22 C 0.043 3.957 23 N -0.859 5.859 24 Si 0.942 3.058 25 H -0.265 1.265 26 H -0.275 1.275 27 H -0.274 1.274 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.047 0.953 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.417 0.583 41 H 0.148 0.852 42 H 0.123 0.877 43 H 0.143 0.857 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.035 -7.771 9.142 12.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.150 4.150 4 C 0.018 3.982 5 H 0.106 0.894 6 O -0.272 6.272 7 C -0.023 4.023 8 C -0.204 4.204 9 C 0.270 3.730 10 O -0.398 6.398 11 N -0.290 5.290 12 C -0.032 4.032 13 C -0.082 4.082 14 C -0.246 4.246 15 C 0.107 3.893 16 F -0.130 7.130 17 C -0.277 4.277 18 C 0.099 3.901 19 O -0.074 6.074 20 C -0.467 4.467 21 H 0.112 0.888 22 C -0.162 4.162 23 N -0.494 5.494 24 Si 0.766 3.234 25 H -0.189 1.189 26 H -0.200 1.200 27 H -0.200 1.200 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.253 0.747 41 H 0.166 0.834 42 H 0.141 0.859 43 H 0.161 0.839 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.774 -7.905 9.698 12.535 hybrid contribution 0.151 0.771 -1.563 1.749 sum -0.623 -7.134 8.135 10.838 Atomic orbital electron populations 1.21779 0.95661 1.01580 1.02045 1.21452 0.95826 0.95779 1.02580 1.21700 0.90508 0.98788 1.04004 1.22011 0.95202 0.89749 0.91283 0.89398 1.87956 1.32647 1.72226 1.34384 1.22557 0.84806 0.96682 0.98206 1.21691 1.00256 1.01371 0.97088 1.21462 0.81312 0.88473 0.81762 1.90626 1.33986 1.75811 1.39363 1.43267 1.51626 1.07591 1.26527 1.16946 1.10908 0.83589 0.91732 1.20817 0.97326 0.93175 0.96904 1.20509 1.12405 0.95133 0.96528 1.17473 0.99684 0.77702 0.94484 1.91409 1.89681 1.34451 1.97479 1.20855 1.13230 0.95550 0.98071 1.18748 0.94526 0.90335 0.86477 1.83908 1.72820 1.39793 1.10902 1.21384 1.40449 1.02994 0.81842 0.88805 1.25280 0.95725 0.96528 0.98633 1.70013 1.36508 1.15841 1.27009 0.85619 0.78518 0.79250 0.79973 1.18945 1.20025 1.19984 0.92780 0.92721 0.92460 0.91932 0.91170 0.90397 0.89629 0.93469 0.92724 0.92116 0.91285 0.91632 0.74666 0.83416 0.85926 0.83934 0.91848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 37.16 0.37 -1.01 16 2 C -0.12 -1.17 5.75 -26.73 -0.15 -1.33 16 3 C -0.11 -1.29 4.86 -26.74 -0.13 -1.42 16 4 C 0.08 1.06 2.54 -27.89 -0.07 0.99 16 5 H 0.09 1.06 7.89 -51.93 -0.41 0.65 16 6 O -0.35 -4.91 9.11 -55.14 -0.50 -5.41 16 7 C 0.05 0.65 6.31 37.15 0.23 0.89 16 8 C -0.15 -1.48 10.28 37.15 0.38 -1.10 16 9 C 0.48 8.18 6.84 -10.99 -0.08 8.11 16 10 O -0.52 -10.21 13.15 -14.37 -0.19 -10.40 16 11 N -0.64 -11.65 5.12 -9.72 -0.05 -11.70 16 12 C 0.06 1.29 6.46 -83.45 -0.54 0.75 16 13 C -0.06 -1.20 8.72 -39.43 -0.34 -1.55 16 14 C -0.23 -4.23 10.02 -39.48 -0.40 -4.63 16 15 C 0.13 2.54 7.29 -39.43 -0.29 2.25 16 16 F -0.15 -2.91 17.26 2.25 0.04 -2.87 16 17 C -0.26 -5.57 9.10 -39.36 -0.36 -5.93 16 18 C 0.15 3.53 6.66 -38.94 -0.26 3.27 16 19 O -0.17 -4.38 9.16 0.02 0.00 -4.38 16 20 C -0.39 -10.15 9.43 30.88 0.29 -9.86 16 21 H 0.09 2.31 5.31 -52.49 -0.28 2.03 16 22 C 0.04 1.10 5.49 -17.51 -0.10 1.01 16 23 N -0.86 -22.95 13.67 55.48 0.76 -22.19 16 24 Si 0.94 19.42 29.55 -169.99 -5.02 14.40 16 25 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 26 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 27 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.71 7.90 -51.93 -0.41 0.30 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.09 0.95 7.62 -51.93 -0.40 0.56 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.05 0.75 7.64 -51.93 -0.40 0.35 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.42 7.22 7.89 -40.82 -0.32 6.90 16 41 H 0.15 2.82 5.73 -52.48 -0.30 2.52 16 42 H 0.12 2.00 8.06 -52.49 -0.42 1.57 16 43 H 0.14 3.10 5.73 -52.49 -0.30 2.80 16 44 H 0.27 6.68 8.31 -40.82 -0.34 6.35 16 LS Contribution 373.40 15.07 5.63 5.63 Total: -1.00 -29.26 373.40 -6.95 -36.21 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -6.18 Total: 10.26 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -1.43 Total: -9.55 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: 0.71 Total: -33.89 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.69 Total: -20.19 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.04 Total: -2.87 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.40 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.26 -6.95 -36.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860057161.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.919 kcal (2) G-P(sol) polarization free energy of solvation -29.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds