Wall clock time and date at job start Tue Mar 31 2020 15:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47472 * 2 1 4 4 C 1.52992 * 109.47486 * 185.00504 * 3 2 1 5 5 H 1.09007 * 109.47148 * 57.39388 * 4 3 2 6 6 O 1.42902 * 109.47478 * 297.39104 * 4 3 2 7 7 C 1.42897 * 114.00094 * 154.63075 * 6 4 3 8 8 C 1.52993 * 109.47070 * 175.01308 * 7 6 4 9 9 C 1.50700 * 109.47408 * 177.38910 * 4 3 2 10 10 O 1.21297 * 119.99942 * 120.00212 * 9 4 3 11 11 N 1.34775 * 119.99996 * 300.00615 * 9 4 3 12 12 C 1.40091 * 120.00076 * 174.47570 * 11 9 4 13 13 C 1.38705 * 120.07733 * 335.92629 * 12 11 9 14 14 C 1.38189 * 120.02488 * 179.69809 * 13 12 11 15 15 C 1.38557 * 120.17313 * 0.59882 * 14 13 12 16 16 F 1.35092 * 119.92293 * 179.69749 * 15 14 13 17 17 C 1.38341 * 120.15139 * 359.67698 * 15 14 13 18 18 C 1.38743 * 119.97744 * 0.02562 * 17 15 14 19 19 O 1.35783 * 120.08493 * 179.97438 * 18 17 15 20 20 C 1.34805 * 116.99803 * 6.24518 * 19 18 17 21 21 H 1.07996 * 120.00158 * 5.68101 * 20 19 18 22 22 C 1.38644 * 119.99715 * 185.67371 * 20 19 18 23 23 N 1.31572 * 119.99527 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00024 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47083 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46759 * 120.00104 * 24 22 20 27 27 H 1.48496 * 109.47087 * 240.00076 * 24 22 20 28 28 H 1.09004 * 109.46859 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46918 * 300.00086 * 1 2 3 30 30 H 1.08998 * 109.47061 * 59.99650 * 1 2 3 31 31 H 1.09003 * 109.46985 * 239.99978 * 2 1 3 32 32 H 1.08998 * 109.47061 * 120.00350 * 2 1 3 33 33 H 1.09005 * 109.46925 * 65.00766 * 3 2 1 34 34 H 1.09003 * 109.46870 * 305.01202 * 3 2 1 35 35 H 1.09004 * 109.47260 * 295.01307 * 7 6 4 36 36 H 1.09004 * 109.46984 * 55.01251 * 7 6 4 37 37 H 1.09004 * 109.47264 * 60.00114 * 8 7 6 38 38 H 1.09004 * 109.47434 * 179.97438 * 8 7 6 39 39 H 1.08996 * 109.46993 * 299.99768 * 8 7 6 40 40 H 0.96997 * 120.00357 * 354.47215 * 11 9 4 41 41 H 1.08004 * 119.99134 * 359.97438 * 13 12 11 42 42 H 1.07994 * 119.91537 * 180.29624 * 14 13 12 43 43 H 1.08000 * 120.01138 * 180.02562 * 17 15 14 44 44 H 0.97008 * 119.99449 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5648 1.4443 -0.1258 5 1 3.8551 0.9163 -1.0343 6 8 4.1373 0.7905 1.0086 7 6 5.4281 0.2280 0.7652 8 6 5.9946 -0.3327 2.0711 9 6 4.0619 2.8655 -0.1904 10 8 4.8307 3.2779 0.6523 11 7 3.6521 3.6782 -1.1843 12 6 4.0207 5.0298 -1.1809 13 6 4.3518 5.6570 0.0111 14 6 4.7213 6.9886 0.0124 15 6 4.7504 7.7044 -1.1737 16 9 5.1065 9.0075 -1.1657 17 6 4.4161 7.0875 -2.3659 18 6 4.0502 5.7493 -2.3753 19 8 3.7211 5.1418 -3.5442 20 6 3.8941 5.8555 -4.6747 21 1 4.3637 6.8271 -4.6334 22 6 3.4692 5.3420 -5.8904 23 7 2.8968 4.1584 -5.9406 24 14 3.7095 6.3306 -7.4571 25 1 4.3732 7.6188 -7.1326 26 1 4.5581 5.5615 -8.4024 27 1 2.3889 6.5970 -8.0817 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.7518 1.9297 0.9315 34 1 1.6053 1.9815 -0.8417 35 1 5.3426 -0.5742 0.0322 36 1 6.0948 1.0007 0.3821 37 1 5.3279 -1.1054 2.4542 38 1 6.9791 -0.7622 1.8855 39 1 6.0801 0.4694 2.8041 40 1 3.1020 3.3274 -1.9021 41 1 4.3252 5.1034 0.9380 42 1 4.9833 7.4739 0.9408 43 1 4.4400 7.6475 -3.2891 44 1 2.5992 3.7993 -6.7912 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860057161.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:32 Heat of formation + Delta-G solvation = -157.749655 kcal Electronic energy + Delta-G solvation = -27913.821632 eV Core-core repulsion = 23745.688965 eV Total energy + Delta-G solvation = -4168.132667 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.85669 -41.88109 -40.56107 -38.90987 -37.84688 -36.13148 -35.39360 -34.31787 -32.45832 -31.22639 -30.71209 -29.28441 -27.42217 -25.74875 -24.12081 -23.79517 -23.16266 -22.12150 -21.39190 -20.18462 -19.65246 -18.62307 -18.51320 -17.66770 -17.09958 -16.93691 -16.63743 -16.45294 -16.14923 -15.97142 -15.74871 -15.53497 -15.37529 -15.25270 -15.03725 -14.65275 -14.14342 -14.02400 -13.88143 -13.60012 -13.42911 -13.11982 -13.09800 -12.95808 -12.74178 -12.65299 -12.37210 -12.22645 -12.13161 -12.00861 -11.95648 -11.69436 -11.48417 -11.37994 -11.25983 -10.84484 -10.26132 -9.59578 -8.75874 -8.52580 -6.17951 0.12084 0.41796 1.37614 1.42476 1.45491 1.53147 1.91239 2.13535 2.61260 2.66450 3.03788 3.12635 3.41726 3.46174 3.78987 3.86996 3.92751 4.13038 4.16439 4.20543 4.27106 4.32148 4.36017 4.47928 4.58073 4.66093 4.70768 4.85804 4.90162 4.92013 4.98716 5.02628 5.04433 5.19164 5.24300 5.26890 5.27520 5.31510 5.35629 5.47471 5.50015 5.91704 5.96968 6.04484 6.41839 6.92279 7.02130 7.59159 8.68079 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009622 B = 0.003979 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2909.436569 B = 7035.020406 C = 8763.360843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.113 4.113 3 C -0.109 4.109 4 C 0.086 3.914 5 H 0.105 0.895 6 O -0.364 6.364 7 C 0.046 3.954 8 C -0.143 4.143 9 C 0.484 3.516 10 O -0.548 6.548 11 N -0.645 5.645 12 C 0.064 3.936 13 C -0.065 4.065 14 C -0.202 4.202 15 C 0.120 3.880 16 F -0.145 7.145 17 C -0.262 4.262 18 C 0.130 3.870 19 O -0.202 6.202 20 C -0.415 4.415 21 H 0.097 0.903 22 C -0.006 4.006 23 N -0.902 5.902 24 Si 1.010 2.990 25 H -0.258 1.258 26 H -0.269 1.269 27 H -0.267 1.267 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.033 0.967 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.050 0.950 40 H 0.419 0.581 41 H 0.156 0.844 42 H 0.156 0.844 43 H 0.137 0.863 44 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.901 -8.089 9.854 12.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.151 4.151 3 C -0.146 4.146 4 C 0.024 3.976 5 H 0.122 0.878 6 O -0.281 6.281 7 C -0.030 4.030 8 C -0.200 4.200 9 C 0.272 3.728 10 O -0.426 6.426 11 N -0.291 5.291 12 C -0.031 4.031 13 C -0.085 4.085 14 C -0.222 4.222 15 C 0.100 3.900 16 F -0.123 7.123 17 C -0.282 4.282 18 C 0.077 3.923 19 O -0.107 6.107 20 C -0.491 4.491 21 H 0.115 0.885 22 C -0.206 4.206 23 N -0.538 5.538 24 Si 0.830 3.170 25 H -0.182 1.182 26 H -0.194 1.194 27 H -0.192 1.192 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.051 0.949 37 H 0.090 0.910 38 H 0.107 0.893 39 H 0.069 0.931 40 H 0.256 0.744 41 H 0.173 0.827 42 H 0.174 0.826 43 H 0.154 0.846 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.635 -8.222 10.452 13.313 hybrid contribution 0.178 0.892 -1.538 1.787 sum -0.457 -7.330 8.914 11.550 Atomic orbital electron populations 1.21773 0.94924 1.02351 1.01937 1.21415 0.96400 0.94379 1.02892 1.21711 0.89043 1.00133 1.03743 1.22087 0.96190 0.87279 0.92038 0.87757 1.87960 1.33372 1.72053 1.34749 1.22752 0.83747 0.96607 0.99879 1.21699 1.01502 1.01120 0.95657 1.22215 0.80351 0.89616 0.80577 1.90598 1.35145 1.76638 1.40206 1.43372 1.51709 1.06934 1.27042 1.17211 1.09753 0.84745 0.91435 1.20989 0.97267 0.93577 0.96653 1.20884 1.09449 0.94594 0.97294 1.17459 1.00084 0.78115 0.94298 1.91426 1.89592 1.33874 1.97431 1.20936 1.13155 0.95427 0.98717 1.19063 0.95540 0.91144 0.86591 1.83883 1.74742 1.40596 1.11463 1.21742 1.41342 1.03405 0.82623 0.88532 1.26332 0.95195 0.97547 1.01498 1.70109 1.38178 1.17518 1.28015 0.84637 0.78737 0.77920 0.75697 1.18206 1.19366 1.19199 0.91589 0.92655 0.92776 0.91269 0.91163 0.90980 0.89520 0.91317 0.94889 0.90995 0.89310 0.93059 0.74385 0.82671 0.82610 0.84563 0.91518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.91 71.98 0.71 -1.79 16 2 C -0.11 -2.05 5.75 30.59 0.18 -1.88 16 3 C -0.11 -2.39 4.86 30.59 0.15 -2.24 16 4 C 0.09 2.22 2.54 29.85 0.08 2.30 16 5 H 0.10 2.38 7.89 -2.38 -0.02 2.36 16 6 O -0.36 -9.66 9.11 -129.94 -1.18 -10.85 16 7 C 0.05 1.07 6.31 71.98 0.45 1.52 16 8 C -0.14 -2.65 10.28 71.98 0.74 -1.91 16 9 C 0.48 16.28 6.84 87.66 0.60 16.88 16 10 O -0.55 -21.28 13.15 15.95 0.21 -21.07 16 11 N -0.65 -23.52 5.12 -303.04 -1.55 -25.07 16 12 C 0.06 2.64 6.46 38.23 0.25 2.88 16 13 C -0.06 -2.44 8.72 22.37 0.20 -2.24 16 14 C -0.20 -7.16 10.02 22.33 0.22 -6.93 16 15 C 0.12 4.68 7.29 22.37 0.16 4.85 16 16 F -0.14 -5.31 17.26 44.97 0.78 -4.53 16 17 C -0.26 -11.47 9.10 22.42 0.20 -11.26 16 18 C 0.13 6.06 6.66 22.69 0.15 6.21 16 19 O -0.20 -10.68 9.16 -22.84 -0.21 -10.89 16 20 C -0.42 -22.20 9.43 67.92 0.64 -21.56 16 21 H 0.10 4.90 5.31 -2.91 -0.02 4.88 16 22 C -0.01 -0.29 5.49 84.83 0.47 0.18 16 23 N -0.90 -49.33 13.67 21.61 0.30 -49.03 16 24 Si 1.01 40.02 29.55 68.60 2.03 42.05 16 25 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 26 H -0.27 -10.27 7.11 99.48 0.71 -9.57 16 27 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 28 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 1.29 7.90 -2.39 -0.02 1.27 16 33 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 34 H 0.09 1.89 7.62 -2.39 -0.02 1.87 16 35 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.03 0.89 7.64 -2.38 -0.02 0.87 16 37 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 38 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 39 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.42 14.88 7.89 -92.71 -0.73 14.15 16 41 H 0.16 5.72 5.73 -2.91 -0.02 5.71 16 42 H 0.16 4.49 8.06 -2.91 -0.02 4.47 16 43 H 0.14 6.06 5.73 -2.91 -0.02 6.05 16 44 H 0.28 13.84 8.31 -92.70 -0.77 13.07 16 Total: -1.00 -63.44 373.40 5.86 -57.58 By element: Atomic # 1 Polarization: 36.53 SS G_CDS: 0.30 Total: 36.83 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: 5.20 Total: -15.01 kcal Atomic # 7 Polarization: -72.84 SS G_CDS: -1.26 Total: -74.10 kcal Atomic # 8 Polarization: -41.63 SS G_CDS: -1.18 Total: -42.81 kcal Atomic # 9 Polarization: -5.31 SS G_CDS: 0.78 Total: -4.53 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 2.03 Total: 42.05 kcal Total: -63.44 5.86 -57.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860057161.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.172 kcal (2) G-P(sol) polarization free energy of solvation -63.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds