Wall clock time and date at job start Tue Mar 31 2020 14:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.46849 * 2 1 4 4 C 1.52996 * 109.47460 * 239.99823 * 2 1 3 5 5 C 1.50709 * 109.47079 * 59.99964 * 4 2 1 6 6 H 1.08001 * 119.99331 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00242 * 179.97438 * 5 4 2 8 8 N 1.31520 * 120.00070 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00390 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46828 * 0.02562 * 9 7 5 11 11 H 1.48491 * 109.47433 * 120.00076 * 9 7 5 12 12 H 1.48502 * 109.47473 * 240.00495 * 9 7 5 13 13 C 1.52998 * 109.47254 * 119.99772 * 2 1 3 14 14 N 1.46506 * 109.47237 * 300.00146 * 13 2 1 15 15 C 1.37719 * 120.00059 * 179.72048 * 14 13 2 16 16 C 1.38153 * 120.64289 * 0.02562 * 15 14 13 17 17 C 1.39257 * 119.01310 * 179.97438 * 16 15 14 18 18 C 1.50708 * 119.78084 * 179.97438 * 17 16 15 19 19 F 1.39900 * 109.46999 * 300.00296 * 18 17 16 20 20 F 1.39897 * 109.46871 * 60.00346 * 18 17 16 21 21 N 1.31645 * 120.43425 * 0.02611 * 17 16 15 22 22 C 1.33794 * 121.22783 * 359.97207 * 21 17 16 23 23 N 1.32860 * 132.42114 * 179.97438 * 22 21 17 24 24 C 1.32725 * 109.73973 * 180.02562 * 23 22 21 25 25 N 1.31065 * 109.62872 * 359.97438 * 24 23 22 26 26 N 1.36508 * 120.64197 * 179.72276 * 15 14 13 27 27 H 1.09002 * 109.47712 * 299.99691 * 1 2 3 28 28 H 1.08995 * 109.47426 * 60.00418 * 1 2 3 29 29 H 1.09002 * 109.47145 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46786 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.46766 * 299.99987 * 3 2 1 32 32 H 1.09002 * 109.47164 * 59.99980 * 3 2 1 33 33 H 1.09000 * 109.47441 * 179.97438 * 4 2 1 34 34 H 1.08994 * 109.47235 * 299.99931 * 4 2 1 35 35 H 0.96994 * 120.00439 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.47671 * 180.02562 * 13 2 1 37 37 H 1.08998 * 109.47454 * 60.00483 * 13 2 1 38 38 H 0.97005 * 119.99811 * 0.02562 * 14 13 2 39 39 H 1.08004 * 120.49538 * 359.95644 * 16 15 14 40 40 H 1.09001 * 109.47076 * 180.02562 * 18 17 16 41 41 H 1.07997 * 125.18276 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8712 -0.4816 -3.7319 8 7 2.6274 -1.5509 -3.8526 9 14 1.2480 0.3985 -5.2572 10 1 0.4226 1.5649 -4.8530 11 1 2.4026 0.8661 -6.0654 12 1 0.4238 -0.5355 -6.0656 13 6 2.0400 -0.7212 1.2492 14 7 1.5516 -0.0305 2.4455 15 6 1.8796 -0.5044 3.6963 16 6 2.6686 -1.6294 3.8385 17 6 2.9799 -2.0786 5.1193 18 6 3.8389 -3.3045 5.2945 19 9 3.2147 -4.4014 4.6910 20 9 5.0852 -3.0899 4.6965 21 7 2.5279 -1.4401 6.1781 22 6 1.7628 -0.3493 6.0561 23 7 1.1962 0.4527 6.9511 24 6 0.5238 1.4136 6.3297 25 7 0.6361 1.2617 5.0327 26 7 1.4364 0.1321 4.8196 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4426 0.0005 31 1 1.6765 1.9563 -0.8900 32 1 1.6765 1.9564 0.8900 33 1 3.1300 -0.7209 -1.2494 34 1 1.6767 -1.7489 -1.2492 35 1 2.8618 -1.8823 -4.7335 36 1 3.1300 -0.7208 1.2495 37 1 1.6767 -1.7489 1.2493 38 1 0.9936 0.7579 2.3564 39 1 3.0384 -2.1530 2.9692 40 1 3.9750 -3.5039 6.3575 41 1 -0.0313 2.2006 6.8184 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882376371.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:23 Heat of formation + Delta-G solvation = 26.796463 kcal Electronic energy + Delta-G solvation = -27492.881772 eV Core-core repulsion = 23273.876823 eV Total energy + Delta-G solvation = -4219.004949 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.34394 -47.32693 -43.05001 -39.48873 -38.16573 -35.91121 -33.34407 -32.29883 -31.77789 -30.19793 -27.76067 -27.25530 -26.78236 -26.76318 -24.26106 -23.14075 -22.85812 -21.61050 -19.65868 -18.54719 -18.34227 -17.67408 -17.62555 -17.05935 -16.78945 -16.51858 -15.80907 -15.25245 -15.04122 -14.82928 -14.61744 -14.24118 -14.17933 -13.67396 -13.43921 -13.29502 -13.08711 -13.01927 -12.89561 -12.82253 -12.22740 -12.20012 -11.77114 -11.43120 -11.19254 -10.99198 -10.84610 -10.69546 -10.44004 -10.38969 -10.30777 -10.23731 -10.04106 -9.80822 -9.46869 -9.13555 -8.50712 -8.12372 -6.14854 -4.16893 0.22104 0.59354 1.43017 2.36976 2.56688 2.70797 3.13930 3.21179 3.30194 3.31926 3.60404 3.76243 4.02111 4.30061 4.33587 4.53645 4.63409 4.88536 4.96919 5.10036 5.15386 5.17778 5.23937 5.44093 5.63953 5.78245 5.82156 5.87354 5.97877 6.02781 6.07017 6.34132 6.39499 6.51980 6.76973 6.82994 6.86511 6.95013 7.27726 7.41939 7.51894 7.71987 7.82276 8.22326 8.87237 9.47620 10.96449 Molecular weight = 325.14amu Principal moments of inertia in cm(-1) A = 0.014573 B = 0.003203 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.894925 B = 8739.170995 C =10299.041958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.070 4.070 3 C -0.131 4.131 4 C 0.037 3.963 5 C -0.515 4.515 6 H 0.060 0.940 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.118 3.882 14 N -0.680 5.680 15 C 0.500 3.500 16 C -0.302 4.302 17 C 0.195 3.805 18 C 0.331 3.669 19 F -0.184 7.184 20 F -0.184 7.184 21 N -0.492 5.492 22 C 0.486 3.514 23 N -0.535 5.535 24 C 0.257 3.743 25 N -0.345 5.345 26 N -0.359 5.359 27 H 0.028 0.972 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.028 0.972 33 H 0.021 0.979 34 H 0.021 0.979 35 H 0.261 0.739 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.419 0.581 39 H 0.174 0.826 40 H 0.141 0.859 41 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.160 0.162 17.579 17.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.071 4.071 3 C -0.188 4.188 4 C 0.000 4.000 5 C -0.554 4.554 6 H 0.078 0.922 7 C -0.143 4.143 8 N -0.532 5.532 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.210 1.210 13 C -0.004 4.004 14 N -0.306 5.306 15 C 0.270 3.730 16 C -0.337 4.337 17 C 0.036 3.964 18 C 0.276 3.724 19 F -0.165 7.165 20 F -0.165 7.165 21 N -0.214 5.214 22 C 0.125 3.875 23 N -0.269 5.269 24 C -0.045 4.045 25 N -0.176 5.176 26 N -0.145 5.145 27 H 0.047 0.953 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.047 0.953 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.071 0.929 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.258 0.742 39 H 0.191 0.809 40 H 0.158 0.842 41 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -0.281 0.349 18.041 18.046 hybrid contribution -0.645 0.914 -1.950 2.249 sum -0.926 1.264 16.090 16.166 Atomic orbital electron populations 1.21804 0.94847 1.01485 1.00682 1.20953 0.95839 0.96082 0.94209 1.21807 1.00735 0.95587 1.00680 1.19109 0.96492 0.95267 0.89136 1.21159 1.31561 1.12270 0.90366 0.92158 1.24991 0.95140 0.95022 0.99151 1.69952 1.36699 1.22907 1.23599 0.86577 0.78685 0.79695 0.83299 1.19788 1.21023 1.21015 1.22246 0.99710 0.96651 0.81825 1.45307 1.51906 1.31652 1.01728 1.17992 0.87811 0.87738 0.79464 1.20987 1.11699 1.00873 1.00153 1.21646 0.92129 0.94111 0.88552 1.20016 0.75966 0.80116 0.96276 1.93075 1.82749 1.54429 1.86240 1.93074 1.42045 1.94917 1.86452 1.67417 1.15849 1.07274 1.30832 1.22515 0.93388 0.92040 0.79537 1.70964 1.19688 1.07869 1.28371 1.26235 0.94435 0.96208 0.87610 1.78389 1.17842 1.02556 1.18801 1.48864 1.36441 1.21778 1.07431 0.95323 0.90870 0.93029 0.93030 0.90870 0.95322 0.96071 0.96069 0.92922 0.90208 0.90218 0.74180 0.80852 0.84187 0.75209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 8.05 37.15 0.30 -1.78 16 2 C -0.07 -1.15 0.54 -154.51 -0.08 -1.24 16 3 C -0.13 -2.08 8.05 37.16 0.30 -1.78 16 4 C 0.04 0.82 4.04 -27.88 -0.11 0.70 16 5 C -0.52 -12.74 7.65 -34.44 -0.26 -13.01 16 6 H 0.06 1.45 5.68 -52.49 -0.30 1.15 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -24.85 13.29 55.43 0.74 -24.12 16 9 Si 0.89 20.28 29.54 -169.99 -5.02 15.26 16 10 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 C 0.12 1.58 3.80 -4.04 -0.02 1.57 16 14 N -0.68 -8.55 5.08 -60.01 -0.30 -8.86 16 15 C 0.50 6.51 7.76 -152.98 -1.19 5.32 16 16 C -0.30 -3.57 8.90 -39.23 -0.35 -3.92 16 17 C 0.19 2.26 6.30 -82.29 -0.52 1.74 16 18 C 0.33 2.99 5.55 36.01 0.20 3.19 16 19 F -0.18 -1.85 17.26 2.25 0.04 -1.81 16 20 F -0.18 -1.85 17.26 2.25 0.04 -1.81 16 21 N -0.49 -6.68 10.36 -10.18 -0.11 -6.78 16 22 C 0.49 7.19 9.00 -323.15 -2.91 4.29 16 23 N -0.54 -7.66 11.26 -15.66 -0.18 -7.84 16 24 C 0.26 2.98 12.98 -91.97 -1.19 1.79 16 25 N -0.35 -4.64 12.76 29.26 0.37 -4.27 16 26 N -0.36 -5.07 3.93 -12.98 -0.05 -5.12 16 27 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 28 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 32 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 36 H 0.08 1.04 7.97 -51.93 -0.41 0.62 16 37 H 0.08 1.03 7.94 -51.93 -0.41 0.62 16 38 H 0.42 5.34 6.27 -40.82 -0.26 5.09 16 39 H 0.17 1.81 6.78 -52.48 -0.36 1.46 16 40 H 0.14 0.86 8.11 -51.93 -0.42 0.44 16 41 H 0.23 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 348.76 15.07 5.26 5.26 Total: -1.00 -29.79 348.76 -9.95 -39.74 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -4.81 Total: 2.05 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -5.93 Total: -1.69 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: 0.47 Total: -56.98 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 0.08 Total: -3.63 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.79 -9.95 -39.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882376371.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.537 kcal (2) G-P(sol) polarization free energy of solvation -29.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds