Wall clock time and date at job start Tue Mar 31 2020 14:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.46849 * 2 1 4 4 C 1.52996 * 109.47460 * 239.99823 * 2 1 3 5 5 C 1.50709 * 109.47079 * 59.99964 * 4 2 1 6 6 H 1.08001 * 119.99331 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00242 * 179.97438 * 5 4 2 8 8 N 1.31520 * 120.00070 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00390 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46828 * 0.02562 * 9 7 5 11 11 H 1.48491 * 109.47433 * 120.00076 * 9 7 5 12 12 H 1.48502 * 109.47473 * 240.00495 * 9 7 5 13 13 C 1.52998 * 109.47254 * 119.99772 * 2 1 3 14 14 N 1.46506 * 109.47237 * 300.00146 * 13 2 1 15 15 C 1.37719 * 120.00059 * 179.72048 * 14 13 2 16 16 C 1.38153 * 120.64289 * 0.02562 * 15 14 13 17 17 C 1.39257 * 119.01310 * 179.97438 * 16 15 14 18 18 C 1.50708 * 119.78084 * 179.97438 * 17 16 15 19 19 F 1.39900 * 109.46999 * 300.00296 * 18 17 16 20 20 F 1.39897 * 109.46871 * 60.00346 * 18 17 16 21 21 N 1.31645 * 120.43425 * 0.02611 * 17 16 15 22 22 C 1.33794 * 121.22783 * 359.97207 * 21 17 16 23 23 N 1.32860 * 132.42114 * 179.97438 * 22 21 17 24 24 C 1.32725 * 109.73973 * 180.02562 * 23 22 21 25 25 N 1.31065 * 109.62872 * 359.97438 * 24 23 22 26 26 N 1.36508 * 120.64197 * 179.72276 * 15 14 13 27 27 H 1.09002 * 109.47712 * 299.99691 * 1 2 3 28 28 H 1.08995 * 109.47426 * 60.00418 * 1 2 3 29 29 H 1.09002 * 109.47145 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46786 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.46766 * 299.99987 * 3 2 1 32 32 H 1.09002 * 109.47164 * 59.99980 * 3 2 1 33 33 H 1.09000 * 109.47441 * 179.97438 * 4 2 1 34 34 H 1.08994 * 109.47235 * 299.99931 * 4 2 1 35 35 H 0.96994 * 120.00439 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.47671 * 180.02562 * 13 2 1 37 37 H 1.08998 * 109.47454 * 60.00483 * 13 2 1 38 38 H 0.97005 * 119.99811 * 0.02562 * 14 13 2 39 39 H 1.08004 * 120.49538 * 359.95644 * 16 15 14 40 40 H 1.09001 * 109.47076 * 180.02562 * 18 17 16 41 41 H 1.07997 * 125.18276 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8712 -0.4816 -3.7319 8 7 2.6274 -1.5509 -3.8526 9 14 1.2480 0.3985 -5.2572 10 1 0.4226 1.5649 -4.8530 11 1 2.4026 0.8661 -6.0654 12 1 0.4238 -0.5355 -6.0656 13 6 2.0400 -0.7212 1.2492 14 7 1.5516 -0.0305 2.4455 15 6 1.8796 -0.5044 3.6963 16 6 2.6686 -1.6294 3.8385 17 6 2.9799 -2.0786 5.1193 18 6 3.8389 -3.3045 5.2945 19 9 3.2147 -4.4014 4.6910 20 9 5.0852 -3.0899 4.6965 21 7 2.5279 -1.4401 6.1781 22 6 1.7628 -0.3493 6.0561 23 7 1.1962 0.4527 6.9511 24 6 0.5238 1.4136 6.3297 25 7 0.6361 1.2617 5.0327 26 7 1.4364 0.1321 4.8196 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4426 0.0005 31 1 1.6765 1.9563 -0.8900 32 1 1.6765 1.9564 0.8900 33 1 3.1300 -0.7209 -1.2494 34 1 1.6767 -1.7489 -1.2492 35 1 2.8618 -1.8823 -4.7335 36 1 3.1300 -0.7208 1.2495 37 1 1.6767 -1.7489 1.2493 38 1 0.9936 0.7579 2.3564 39 1 3.0384 -2.1530 2.9692 40 1 3.9750 -3.5039 6.3575 41 1 -0.0313 2.2006 6.8184 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882376371.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:22 Heat of formation + Delta-G solvation = 13.447500 kcal Electronic energy + Delta-G solvation = -27493.460627 eV Core-core repulsion = 23273.876823 eV Total energy + Delta-G solvation = -4219.583804 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.10482 -48.09217 -44.02339 -40.52130 -39.31240 -37.11290 -34.79331 -33.80098 -32.73132 -31.23030 -29.11590 -28.49055 -28.07459 -27.94405 -25.51907 -24.50073 -23.86925 -22.64803 -20.73977 -19.63962 -19.31556 -18.73664 -18.41727 -18.37613 -17.84987 -17.75801 -16.85385 -16.41814 -16.30814 -15.98494 -15.91626 -15.24272 -15.02035 -14.78406 -14.57574 -14.44256 -14.43919 -14.01111 -13.88776 -13.88061 -13.81602 -13.44506 -12.91215 -12.74232 -12.68273 -12.53890 -12.40232 -12.28326 -12.02959 -11.65119 -11.41535 -11.27755 -11.08378 -11.07916 -10.91314 -10.83130 -10.51681 -9.12130 -8.15695 -6.21581 -0.73334 -0.38525 0.45219 1.39635 1.43011 1.45299 1.52083 1.62735 1.77098 2.15673 2.43050 2.72418 3.00044 3.15230 3.20159 3.55541 3.71180 3.73937 3.89363 3.95438 3.97174 4.09966 4.21147 4.29600 4.50288 4.58220 4.58490 4.77141 4.83322 4.98315 5.03746 5.04815 5.19067 5.31589 5.45184 5.45457 5.48785 5.54190 5.74887 5.88857 5.93219 6.28927 6.30372 6.75699 6.93002 7.46124 8.96229 Molecular weight = 325.14amu Principal moments of inertia in cm(-1) A = 0.014573 B = 0.003203 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.894925 B = 8739.170995 C =10299.041958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.063 4.063 3 C -0.126 4.126 4 C 0.042 3.958 5 C -0.516 4.516 6 H 0.066 0.934 7 C 0.003 3.997 8 N -0.932 5.932 9 Si 0.948 3.052 10 H -0.263 1.263 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.130 3.870 14 N -0.676 5.676 15 C 0.493 3.507 16 C -0.301 4.301 17 C 0.194 3.806 18 C 0.336 3.664 19 F -0.189 7.189 20 F -0.189 7.189 21 N -0.501 5.501 22 C 0.467 3.533 23 N -0.557 5.557 24 C 0.264 3.736 25 N -0.364 5.364 26 N -0.365 5.365 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.054 0.946 33 H -0.001 1.001 34 H -0.001 1.001 35 H 0.260 0.740 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.419 0.581 39 H 0.186 0.814 40 H 0.174 0.826 41 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.715 0.940 18.819 18.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.063 4.063 3 C -0.183 4.183 4 C 0.005 3.995 5 C -0.554 4.554 6 H 0.084 0.916 7 C -0.195 4.195 8 N -0.573 5.573 9 Si 0.775 3.225 10 H -0.187 1.187 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.007 3.993 14 N -0.302 5.302 15 C 0.263 3.737 16 C -0.336 4.336 17 C 0.036 3.964 18 C 0.282 3.718 19 F -0.170 7.170 20 F -0.170 7.170 21 N -0.224 5.224 22 C 0.106 3.894 23 N -0.292 5.292 24 C -0.037 4.037 25 N -0.194 5.194 26 N -0.151 5.151 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.017 0.983 34 H 0.017 0.983 35 H 0.069 0.931 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.259 0.741 39 H 0.203 0.797 40 H 0.191 0.809 41 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -0.845 1.140 19.288 19.340 hybrid contribution -0.476 0.678 -2.271 2.417 sum -1.321 1.818 17.017 17.165 Atomic orbital electron populations 1.21728 0.94175 1.01379 1.01029 1.20709 0.96265 0.96119 0.93243 1.21731 1.00491 0.95057 1.01027 1.18952 0.94978 0.94472 0.91115 1.21595 1.30413 1.12024 0.91339 0.91613 1.25775 0.95688 0.95807 1.02212 1.70071 1.38548 1.24631 1.24031 0.85642 0.78076 0.78841 0.79957 1.18681 1.21115 1.21104 1.21967 0.99965 0.96449 0.80898 1.45037 1.52213 1.31658 1.01295 1.18112 0.88195 0.88085 0.79321 1.21245 1.11024 1.00451 1.00840 1.22067 0.91766 0.94526 0.88091 1.20266 0.75047 0.78809 0.97693 1.93067 1.82892 1.54527 1.86534 1.93066 1.42310 1.94897 1.86743 1.67457 1.16098 1.07300 1.31542 1.22815 0.93945 0.92606 0.80011 1.70976 1.20533 1.08704 1.28987 1.27128 0.93378 0.96100 0.87053 1.78357 1.18433 1.02736 1.19870 1.48930 1.36660 1.22045 1.07453 0.92689 0.92733 0.93380 0.93383 0.92732 0.92690 0.98273 0.98267 0.93127 0.89605 0.89605 0.74144 0.79680 0.80913 0.70973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.84 8.05 71.98 0.58 -3.26 16 2 C -0.06 -2.01 0.54 -52.18 -0.03 -2.04 16 3 C -0.13 -3.84 8.05 71.98 0.58 -3.26 16 4 C 0.04 1.88 4.04 29.85 0.12 2.00 16 5 C -0.52 -25.65 7.65 25.60 0.20 -25.45 16 6 H 0.07 3.14 5.68 -2.91 -0.02 3.13 16 7 C 0.00 0.15 5.46 84.65 0.46 0.61 16 8 N -0.93 -52.95 13.29 21.45 0.28 -52.66 16 9 Si 0.95 41.79 29.54 68.60 2.03 43.82 16 10 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 12 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 13 C 0.13 3.31 3.80 86.38 0.33 3.64 16 14 N -0.68 -15.76 5.08 -343.76 -1.75 -17.51 16 15 C 0.49 12.06 7.76 131.99 1.02 13.09 16 16 C -0.30 -6.66 8.90 22.49 0.20 -6.46 16 17 C 0.19 4.21 6.30 42.83 0.27 4.48 16 18 C 0.34 5.42 5.55 71.24 0.40 5.81 16 19 F -0.19 -3.49 17.26 44.97 0.78 -2.71 16 20 F -0.19 -3.49 17.26 44.97 0.78 -2.71 16 21 N -0.50 -12.96 10.36 -186.12 -1.93 -14.89 16 22 C 0.47 13.26 9.00 261.61 2.35 15.62 16 23 N -0.56 -15.17 11.26 -203.47 -2.29 -17.46 16 24 C 0.26 5.58 12.98 180.82 2.35 7.93 16 25 N -0.36 -9.11 12.76 -61.36 -0.78 -9.90 16 26 N -0.36 -9.78 3.93 -194.98 -0.77 -10.54 16 27 H 0.05 1.38 6.86 -2.39 -0.02 1.37 16 28 H 0.05 1.86 6.62 -2.39 -0.02 1.85 16 29 H 0.05 1.48 8.14 -2.39 -0.02 1.47 16 30 H 0.05 1.48 8.14 -2.38 -0.02 1.47 16 31 H 0.05 1.86 6.62 -2.39 -0.02 1.85 16 32 H 0.05 1.38 6.86 -2.39 -0.02 1.37 16 33 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 34 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 35 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 36 H 0.09 2.12 7.97 -2.39 -0.02 2.10 16 37 H 0.09 2.11 7.94 -2.39 -0.02 2.09 16 38 H 0.42 9.75 6.27 -92.70 -0.58 9.17 16 39 H 0.19 3.56 6.78 -2.91 -0.02 3.54 16 40 H 0.17 1.68 8.11 -2.39 -0.02 1.66 16 41 H 0.27 2.67 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -64.58 348.76 5.69 -58.90 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 0.51 Total: 12.99 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: 8.83 Total: 12.68 kcal Atomic # 7 Polarization: -115.73 SS G_CDS: -7.23 Total: -122.95 kcal Atomic # 9 Polarization: -6.98 SS G_CDS: 1.55 Total: -5.43 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -64.58 5.69 -58.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882376371.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.345 kcal (2) G-P(sol) polarization free energy of solvation -64.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds