Wall clock time and date at job start Tue Mar 31 2020 15:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53001 * 109.46983 * 2 1 4 4 C 1.52998 * 109.46724 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.47147 * 304.99526 * 4 3 2 6 6 C 1.52996 * 109.47508 * 64.99840 * 4 3 2 7 7 C 1.53005 * 109.47067 * 184.99698 * 4 3 2 8 8 C 1.52994 * 109.47130 * 174.04039 * 7 4 3 9 9 N 1.46498 * 109.47369 * 184.64442 * 8 7 4 10 10 S 1.65592 * 120.00453 * 162.05641 * 9 8 7 11 11 O 1.42099 * 106.40300 * 313.06280 * 10 9 8 12 12 O 1.42103 * 106.40596 * 180.14209 * 10 9 8 13 13 C 1.76199 * 107.21787 * 66.60371 * 10 9 8 14 14 C 1.37640 * 120.13424 * 112.63690 * 13 10 9 15 15 C 1.38610 * 120.25003 * 180.32393 * 14 13 10 16 16 C 1.38653 * 120.50204 * 359.67003 * 15 14 13 17 17 C 1.37601 * 120.24987 * 0.02562 * 16 15 14 18 18 C 1.40700 * 120.12836 * 292.33638 * 13 10 9 19 19 C 1.41406 * 120.23988 * 359.97399 * 18 13 10 20 20 H 1.07999 * 119.99953 * 328.46665 * 19 18 13 21 21 C 1.39946 * 119.99608 * 148.47324 * 19 18 13 22 22 N 1.30823 * 120.00309 * 342.51830 * 21 19 18 23 23 Si 1.86799 * 119.99542 * 162.52747 * 21 19 18 24 24 H 1.48503 * 109.46733 * 183.62372 * 23 21 19 25 25 H 1.48500 * 109.47236 * 303.62498 * 23 21 19 26 26 H 1.48501 * 109.47533 * 63.62851 * 23 21 19 27 27 H 1.09002 * 109.46431 * 300.00330 * 1 2 3 28 28 H 1.09000 * 109.47087 * 59.99933 * 1 2 3 29 29 H 1.08995 * 109.47087 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46663 * 240.00132 * 2 1 3 31 31 H 1.09005 * 109.46744 * 119.99750 * 2 1 3 32 32 H 1.08999 * 109.47292 * 59.99974 * 3 2 1 33 33 H 1.09000 * 109.47264 * 299.99958 * 3 2 1 34 34 H 1.09004 * 109.47036 * 59.99390 * 6 4 3 35 35 H 1.09000 * 109.47646 * 179.97438 * 6 4 3 36 36 H 1.09001 * 109.46999 * 300.00121 * 6 4 3 37 37 H 1.09005 * 109.46680 * 54.04195 * 7 4 3 38 38 H 1.09001 * 109.47238 * 294.04568 * 7 4 3 39 39 H 1.09004 * 109.47209 * 64.64860 * 8 7 4 40 40 H 1.09004 * 109.47553 * 304.64795 * 8 7 4 41 41 H 0.97009 * 120.00037 * 342.06482 * 9 8 7 42 42 H 1.08003 * 119.87035 * 0.02562 * 14 13 10 43 43 H 1.08006 * 119.74708 * 179.69774 * 15 14 13 44 44 H 1.07999 * 119.87766 * 180.02562 * 16 15 14 45 45 H 1.07995 * 120.12517 * 180.02562 * 17 16 15 46 46 H 0.97001 * 119.99683 * 353.00760 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8530 0.8409 6 6 4.0795 0.8330 -1.3082 7 6 4.0802 2.8795 0.1250 8 6 5.6028 2.8689 0.2738 9 7 6.0804 4.2345 0.5050 10 16 7.5902 4.4879 1.1360 11 8 7.7151 3.6072 2.2441 12 8 7.7503 5.8961 1.2406 13 6 8.7565 3.9426 -0.0669 14 6 9.5727 4.8523 -0.7000 15 6 10.4864 4.4267 -1.6515 16 6 10.5942 3.0820 -1.9718 17 6 9.7928 2.1542 -1.3470 18 6 8.8616 2.5748 -0.3794 19 6 8.0331 1.6303 0.2696 20 1 7.7122 1.8021 1.2864 21 6 7.6292 0.4731 -0.4058 22 7 7.7156 0.4128 -1.7098 23 14 6.9665 -0.9855 0.5548 24 1 6.6933 -2.1090 -0.3771 25 1 7.9701 -1.4115 1.5631 26 1 5.7091 -0.5957 1.2421 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8901 32 1 1.6767 1.9564 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 3.7158 1.4225 -2.1498 35 1 5.1695 0.8333 -1.3089 36 1 3.7161 -0.1907 -1.3978 37 1 3.6327 3.3485 1.0014 38 1 3.8061 3.4417 -0.7677 39 1 6.0542 2.4756 -0.6371 40 1 5.8811 2.2388 1.1186 41 1 5.5121 4.9903 0.2886 42 1 9.4976 5.9021 -0.4579 43 1 11.1195 5.1481 -2.1469 44 1 11.3099 2.7615 -2.7144 45 1 9.8788 1.1073 -1.5978 46 1 7.9625 1.2023 -2.2164 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882575436.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:48 Heat of formation + Delta-G solvation = -96.874752 kcal Electronic energy + Delta-G solvation = -27114.376341 eV Core-core repulsion = 23515.096584 eV Total energy + Delta-G solvation = -3599.279757 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -38.04695 -37.51840 -36.34919 -34.97687 -34.84370 -34.03754 -32.25332 -30.25242 -29.47719 -27.80653 -26.53265 -25.50586 -23.17475 -21.91419 -21.22537 -20.96331 -19.82726 -18.61980 -18.17458 -16.85081 -16.18234 -15.59659 -15.44913 -14.89895 -14.70044 -14.60095 -14.06906 -13.94121 -13.68182 -13.50042 -13.27749 -13.13009 -12.60569 -12.38389 -12.30132 -11.98097 -11.70928 -11.62466 -11.38009 -11.32052 -11.26124 -11.20675 -11.16239 -11.00741 -10.88213 -10.67977 -10.58145 -10.54022 -10.25796 -10.22166 -10.04594 -9.79176 -9.33394 -9.32242 -8.60365 -8.26654 -7.81671 -7.44084 -4.87748 1.50816 2.18234 2.59965 3.03906 3.11416 3.24365 3.80763 3.97405 4.30477 4.65236 4.80762 4.96137 5.06467 5.12605 5.24108 5.36537 5.39773 5.53023 5.62757 5.75871 5.79862 5.88251 5.91853 5.94467 5.99474 6.02061 6.04511 6.10775 6.25038 6.25733 6.28138 6.32070 6.44880 6.54160 6.59659 6.64958 6.81340 6.85061 6.89437 7.12502 7.25948 7.34670 7.53792 7.64431 7.67883 7.79107 7.94638 8.35542 8.54821 9.77144 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013392 B = 0.005135 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.341569 B = 5451.974199 C = 6558.867118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.129 4.129 3 C -0.112 4.112 4 C -0.093 4.093 5 H 0.075 0.925 6 C -0.160 4.160 7 C -0.124 4.124 8 C 0.122 3.878 9 N -1.122 6.122 10 S 2.708 3.292 11 O -0.974 6.974 12 O -1.001 7.001 13 C -0.778 4.778 14 C 0.011 3.989 15 C -0.259 4.259 16 C -0.058 4.058 17 C -0.208 4.208 18 C 0.169 3.831 19 C -0.529 4.529 20 H 0.118 0.882 21 C 0.047 3.953 22 N -0.782 5.782 23 Si 1.044 2.956 24 H -0.269 1.269 25 H -0.271 1.271 26 H -0.261 1.261 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.052 0.948 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.405 0.595 42 H 0.110 0.890 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.113 0.887 46 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.025 -1.173 -0.290 10.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C -0.150 4.150 4 C -0.112 4.112 5 H 0.093 0.907 6 C -0.217 4.217 7 C -0.163 4.163 8 C -0.003 4.003 9 N -0.878 5.878 10 S 2.805 3.195 11 O -0.964 6.964 12 O -0.991 6.991 13 C -0.872 4.872 14 C -0.009 4.009 15 C -0.279 4.279 16 C -0.077 4.077 17 C -0.228 4.228 18 C 0.164 3.836 19 C -0.557 4.557 20 H 0.135 0.865 21 C -0.177 4.177 22 N -0.405 5.405 23 Si 0.866 3.134 24 H -0.193 1.193 25 H -0.196 1.196 26 H -0.185 1.185 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.236 0.764 42 H 0.128 0.872 43 H 0.116 0.884 44 H 0.114 0.886 45 H 0.131 0.869 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.290 -2.551 0.381 10.608 hybrid contribution 0.774 1.658 -0.866 2.024 sum -9.515 -0.894 -0.486 9.569 Atomic orbital electron populations 1.21778 0.96365 1.01222 1.01497 1.21610 0.95254 0.97413 1.02351 1.21651 0.95272 0.96447 1.01597 1.21160 0.94589 0.96102 0.99385 0.90709 1.22059 1.03488 0.99991 0.96182 1.21920 0.95963 0.96755 1.01704 1.21816 0.93309 0.81602 1.03621 1.55514 1.34307 1.13572 1.84415 1.00789 0.72618 0.71844 0.74262 1.93469 1.85926 1.66608 1.50421 1.93450 1.86390 1.31790 1.87514 1.29889 1.24899 1.01807 1.30629 1.20329 0.91948 0.97036 0.91617 1.20496 1.06230 0.95500 1.05660 1.20865 0.96518 0.93631 0.96638 1.21404 0.99653 0.98483 1.03240 1.17062 0.88756 0.89258 0.88516 1.21559 1.26235 1.04287 1.03574 0.86456 1.26982 0.93748 1.01081 0.95895 1.70465 1.28318 1.34510 1.07190 0.83969 0.78282 0.75001 0.76156 1.19328 1.19597 1.18544 0.93004 0.92977 0.93079 0.91602 0.92056 0.92300 0.92224 0.93214 0.90237 0.92922 0.91910 0.91960 0.89920 0.89818 0.76352 0.87227 0.88444 0.88573 0.86941 0.88301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 37.16 0.37 -0.99 16 2 C -0.13 -1.36 5.69 -26.73 -0.15 -1.51 16 3 C -0.11 -1.26 4.68 -26.73 -0.13 -1.39 16 4 C -0.09 -1.28 2.38 -90.62 -0.22 -1.49 16 5 H 0.07 1.09 7.86 -51.93 -0.41 0.68 16 6 C -0.16 -2.35 8.72 37.16 0.32 -2.03 16 7 C -0.12 -1.77 4.83 -26.73 -0.13 -1.90 16 8 C 0.12 2.18 4.01 -4.05 -0.02 2.17 16 9 N -1.12 -20.14 5.98 -10.61 -0.06 -20.21 16 10 S 2.71 58.60 5.44 -107.50 -0.58 58.02 16 11 O -0.97 -23.42 14.94 -57.17 -0.85 -24.27 16 12 O -1.00 -22.68 16.97 -57.17 -0.97 -23.65 16 13 C -0.78 -18.18 5.97 -38.87 -0.23 -18.41 16 14 C 0.01 0.24 9.54 -39.66 -0.38 -0.14 16 15 C -0.26 -5.51 10.05 -39.29 -0.39 -5.90 16 16 C -0.06 -1.24 10.02 -39.66 -0.40 -1.64 16 17 C -0.21 -4.89 7.80 -38.87 -0.30 -5.19 16 18 C 0.17 4.10 5.23 -106.82 -0.56 3.54 16 19 C -0.53 -12.44 4.73 -37.74 -0.18 -12.62 16 20 H 0.12 2.85 4.25 -52.49 -0.22 2.62 16 21 C 0.05 1.02 3.36 -17.34 -0.06 0.96 16 22 N -0.78 -17.65 12.01 55.55 0.67 -16.98 16 23 Si 1.04 19.63 29.44 -169.99 -5.00 14.62 16 24 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 25 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 26 H -0.26 -4.45 6.83 56.52 0.39 -4.06 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.71 6.56 -51.93 -0.34 0.37 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 1.37 4.73 -51.93 -0.25 1.13 16 36 H 0.05 0.71 6.56 -51.93 -0.34 0.37 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 1.62 4.90 -51.93 -0.25 1.37 16 40 H 0.08 1.62 5.97 -51.93 -0.31 1.31 16 41 H 0.40 6.06 8.67 -34.46 -0.30 5.76 16 42 H 0.11 2.27 7.32 -52.48 -0.38 1.89 16 43 H 0.10 1.80 8.06 -52.48 -0.42 1.38 16 44 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 45 H 0.11 2.65 6.62 -52.49 -0.35 2.30 16 46 H 0.30 7.06 6.34 -40.82 -0.26 6.80 16 LS Contribution 361.93 15.07 5.45 5.45 Total: -1.00 -27.12 361.93 -10.68 -37.80 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: -6.87 Total: 15.75 kcal Atomic # 6 Polarization: -44.10 SS G_CDS: -2.45 Total: -46.55 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: 0.60 Total: -37.19 kcal Atomic # 8 Polarization: -46.09 SS G_CDS: -1.82 Total: -47.92 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.00 Total: 14.62 kcal Atomic # 16 Polarization: 58.60 SS G_CDS: -0.58 Total: 58.02 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -27.12 -10.68 -37.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882575436.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.073 kcal (2) G-P(sol) polarization free energy of solvation -27.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds