Wall clock time and date at job start Tue Mar 31 2020 15:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53001 * 109.46983 * 2 1 4 4 C 1.52998 * 109.46724 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.47147 * 304.99526 * 4 3 2 6 6 C 1.52996 * 109.47508 * 64.99840 * 4 3 2 7 7 C 1.53005 * 109.47067 * 184.99698 * 4 3 2 8 8 C 1.52994 * 109.47130 * 174.04039 * 7 4 3 9 9 N 1.46498 * 109.47369 * 184.64442 * 8 7 4 10 10 S 1.65592 * 120.00453 * 162.05641 * 9 8 7 11 11 O 1.42099 * 106.40300 * 313.06280 * 10 9 8 12 12 O 1.42103 * 106.40596 * 180.14209 * 10 9 8 13 13 C 1.76199 * 107.21787 * 66.60371 * 10 9 8 14 14 C 1.37640 * 120.13424 * 112.63690 * 13 10 9 15 15 C 1.38610 * 120.25003 * 180.32393 * 14 13 10 16 16 C 1.38653 * 120.50204 * 359.67003 * 15 14 13 17 17 C 1.37601 * 120.24987 * 0.02562 * 16 15 14 18 18 C 1.40700 * 120.12836 * 292.33638 * 13 10 9 19 19 C 1.41406 * 120.23988 * 359.97399 * 18 13 10 20 20 H 1.07999 * 119.99953 * 328.46665 * 19 18 13 21 21 C 1.39946 * 119.99608 * 148.47324 * 19 18 13 22 22 N 1.30823 * 120.00309 * 342.51830 * 21 19 18 23 23 Si 1.86799 * 119.99542 * 162.52747 * 21 19 18 24 24 H 1.48503 * 109.46733 * 183.62372 * 23 21 19 25 25 H 1.48500 * 109.47236 * 303.62498 * 23 21 19 26 26 H 1.48501 * 109.47533 * 63.62851 * 23 21 19 27 27 H 1.09002 * 109.46431 * 300.00330 * 1 2 3 28 28 H 1.09000 * 109.47087 * 59.99933 * 1 2 3 29 29 H 1.08995 * 109.47087 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46663 * 240.00132 * 2 1 3 31 31 H 1.09005 * 109.46744 * 119.99750 * 2 1 3 32 32 H 1.08999 * 109.47292 * 59.99974 * 3 2 1 33 33 H 1.09000 * 109.47264 * 299.99958 * 3 2 1 34 34 H 1.09004 * 109.47036 * 59.99390 * 6 4 3 35 35 H 1.09000 * 109.47646 * 179.97438 * 6 4 3 36 36 H 1.09001 * 109.46999 * 300.00121 * 6 4 3 37 37 H 1.09005 * 109.46680 * 54.04195 * 7 4 3 38 38 H 1.09001 * 109.47238 * 294.04568 * 7 4 3 39 39 H 1.09004 * 109.47209 * 64.64860 * 8 7 4 40 40 H 1.09004 * 109.47553 * 304.64795 * 8 7 4 41 41 H 0.97009 * 120.00037 * 342.06482 * 9 8 7 42 42 H 1.08003 * 119.87035 * 0.02562 * 14 13 10 43 43 H 1.08006 * 119.74708 * 179.69774 * 15 14 13 44 44 H 1.07999 * 119.87766 * 180.02562 * 16 15 14 45 45 H 1.07995 * 120.12517 * 180.02562 * 17 16 15 46 46 H 0.97001 * 119.99683 * 353.00760 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8530 0.8409 6 6 4.0795 0.8330 -1.3082 7 6 4.0802 2.8795 0.1250 8 6 5.6028 2.8689 0.2738 9 7 6.0804 4.2345 0.5050 10 16 7.5902 4.4879 1.1360 11 8 7.7151 3.6072 2.2441 12 8 7.7503 5.8961 1.2406 13 6 8.7565 3.9426 -0.0669 14 6 9.5727 4.8523 -0.7000 15 6 10.4864 4.4267 -1.6515 16 6 10.5942 3.0820 -1.9718 17 6 9.7928 2.1542 -1.3470 18 6 8.8616 2.5748 -0.3794 19 6 8.0331 1.6303 0.2696 20 1 7.7122 1.8021 1.2864 21 6 7.6292 0.4731 -0.4058 22 7 7.7156 0.4128 -1.7098 23 14 6.9665 -0.9855 0.5548 24 1 6.6933 -2.1090 -0.3771 25 1 7.9701 -1.4115 1.5631 26 1 5.7091 -0.5957 1.2421 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8901 32 1 1.6767 1.9564 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 3.7158 1.4225 -2.1498 35 1 5.1695 0.8333 -1.3089 36 1 3.7161 -0.1907 -1.3978 37 1 3.6327 3.3485 1.0014 38 1 3.8061 3.4417 -0.7677 39 1 6.0542 2.4756 -0.6371 40 1 5.8811 2.2388 1.1186 41 1 5.5121 4.9903 0.2886 42 1 9.4976 5.9021 -0.4579 43 1 11.1195 5.1481 -2.1469 44 1 11.3099 2.7615 -2.7144 45 1 9.8788 1.1073 -1.5978 46 1 7.9625 1.2023 -2.2164 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882575436.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:47 Heat of formation + Delta-G solvation = -111.926999 kcal Electronic energy + Delta-G solvation = -27115.029055 eV Core-core repulsion = 23515.096584 eV Total energy + Delta-G solvation = -3599.932471 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.73237 -38.72452 -38.09456 -36.73931 -36.25553 -35.65866 -33.29667 -31.98868 -31.21792 -29.03060 -27.53289 -27.21263 -24.37055 -23.60538 -22.96180 -21.96941 -20.96966 -20.27531 -19.86997 -18.51599 -17.86851 -17.15362 -16.60884 -16.53130 -16.20946 -15.83225 -15.56305 -15.51251 -15.06981 -14.77383 -14.55690 -14.48054 -14.17685 -13.93757 -13.48909 -13.31831 -13.12621 -13.05383 -13.01808 -12.87017 -12.76358 -12.73512 -12.44106 -12.25294 -12.21119 -12.15572 -12.01675 -11.67674 -11.51643 -11.35518 -11.26181 -11.14263 -11.02227 -10.95404 -10.14861 -10.00606 -9.58454 -9.20039 -6.66151 -0.19563 0.41950 0.86416 1.48980 1.57863 1.75050 2.24542 2.34643 2.60560 2.92102 3.36879 3.66544 3.89604 4.02850 4.04121 4.21888 4.28728 4.33240 4.38905 4.51364 4.58030 4.61745 4.72942 4.77053 4.83048 4.87078 4.92103 4.99787 5.01274 5.10198 5.11381 5.22644 5.27420 5.32989 5.36888 5.39084 5.43794 5.50769 5.52362 5.59851 5.62963 5.69151 5.79378 5.86575 6.01782 6.18005 6.31996 6.59429 6.78613 7.99914 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013392 B = 0.005135 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.341569 B = 5451.974199 C = 6558.867118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.131 4.131 3 C -0.105 4.105 4 C -0.092 4.092 5 H 0.064 0.936 6 C -0.160 4.160 7 C -0.118 4.118 8 C 0.122 3.878 9 N -1.107 6.107 10 S 2.724 3.276 11 O -1.001 7.001 12 O -1.012 7.012 13 C -0.798 4.798 14 C -0.005 4.005 15 C -0.259 4.259 16 C -0.057 4.057 17 C -0.231 4.231 18 C 0.147 3.853 19 C -0.540 4.540 20 H 0.106 0.894 21 C 0.033 3.967 22 N -0.787 5.787 23 Si 1.064 2.936 24 H -0.262 1.262 25 H -0.274 1.274 26 H -0.236 1.236 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.060 0.940 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.420 0.580 42 H 0.123 0.877 43 H 0.129 0.871 44 H 0.126 0.874 45 H 0.103 0.897 46 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.447 -0.918 -0.684 11.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.168 4.168 3 C -0.143 4.143 4 C -0.111 4.111 5 H 0.082 0.918 6 C -0.217 4.217 7 C -0.157 4.157 8 C -0.003 4.003 9 N -0.868 5.868 10 S 2.820 3.180 11 O -0.991 6.991 12 O -1.002 7.002 13 C -0.892 4.892 14 C -0.025 4.025 15 C -0.279 4.279 16 C -0.075 4.075 17 C -0.251 4.251 18 C 0.142 3.858 19 C -0.567 4.567 20 H 0.123 0.877 21 C -0.188 4.188 22 N -0.409 5.409 23 Si 0.882 3.118 24 H -0.185 1.185 25 H -0.199 1.199 26 H -0.160 1.160 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.255 0.745 42 H 0.141 0.859 43 H 0.147 0.853 44 H 0.144 0.856 45 H 0.121 0.879 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.708 -2.270 -0.026 11.926 hybrid contribution 1.270 1.637 -0.789 2.217 sum -10.438 -0.632 -0.816 10.489 Atomic orbital electron populations 1.21750 0.95055 1.01837 1.01946 1.21618 0.96421 0.96788 1.01987 1.21593 0.93096 0.97198 1.02404 1.21152 0.96407 0.95248 0.98317 0.91795 1.22038 1.01692 1.00860 0.97111 1.21903 0.93021 0.97707 1.03092 1.21763 0.95825 0.80796 1.01956 1.55159 1.33148 1.14488 1.83990 1.00180 0.73025 0.71061 0.73709 1.93431 1.86581 1.67283 1.51824 1.93422 1.86876 1.32265 1.87684 1.30183 1.26058 1.01883 1.31053 1.20651 0.92153 0.97657 0.91999 1.20901 1.05885 0.96054 1.05056 1.21218 0.96240 0.93559 0.96513 1.21449 1.00716 0.98566 1.04322 1.17329 0.89341 0.89897 0.89199 1.21533 1.26864 1.05233 1.03115 0.87652 1.27748 0.93019 1.02167 0.95870 1.70532 1.29028 1.33864 1.07486 0.83762 0.79008 0.73381 0.75670 1.18546 1.19939 1.15956 0.92522 0.92554 0.92452 0.92039 0.92424 0.91389 0.91469 0.92545 0.92956 0.92118 0.90312 0.90596 0.91754 0.91572 0.74465 0.85902 0.85270 0.85597 0.87862 0.89441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.91 71.99 0.71 -1.59 16 2 C -0.13 -2.48 5.69 30.60 0.17 -2.30 16 3 C -0.11 -2.12 4.68 30.59 0.14 -1.97 16 4 C -0.09 -2.37 2.38 -10.79 -0.03 -2.40 16 5 H 0.06 1.79 7.86 -2.39 -0.02 1.77 16 6 C -0.16 -4.54 8.72 71.98 0.63 -3.91 16 7 C -0.12 -3.17 4.83 30.59 0.15 -3.03 16 8 C 0.12 4.34 4.01 86.38 0.35 4.69 16 9 N -1.11 -39.25 5.98 -187.49 -1.12 -40.37 16 10 S 2.72 118.28 5.44 -56.49 -0.31 117.98 16 11 O -1.00 -48.91 14.94 -128.00 -1.91 -50.82 16 12 O -1.01 -45.35 16.97 -128.00 -2.17 -47.53 16 13 C -0.80 -37.58 5.97 22.73 0.14 -37.44 16 14 C 0.00 -0.21 9.54 22.22 0.21 0.00 16 15 C -0.26 -10.61 10.05 22.46 0.23 -10.38 16 16 C -0.06 -2.38 10.02 22.22 0.22 -2.16 16 17 C -0.23 -10.95 7.80 22.73 0.18 -10.77 16 18 C 0.15 7.26 5.23 -21.29 -0.11 7.15 16 19 C -0.54 -26.00 4.73 23.46 0.11 -25.89 16 20 H 0.11 5.27 4.25 -2.91 -0.01 5.26 16 21 C 0.03 1.47 3.36 85.26 0.29 1.76 16 22 N -0.79 -36.12 12.01 21.83 0.26 -35.86 16 23 Si 1.06 39.32 29.44 68.60 2.02 41.34 16 24 H -0.26 -9.30 7.11 99.48 0.71 -8.60 16 25 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 26 H -0.24 -7.73 6.83 99.48 0.68 -7.05 16 27 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 30 H 0.06 1.21 6.56 -2.39 -0.02 1.19 16 31 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.05 1.79 4.73 -2.39 -0.01 1.78 16 36 H 0.06 1.58 6.56 -2.39 -0.02 1.57 16 37 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 38 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.06 2.56 4.90 -2.39 -0.01 2.55 16 40 H 0.07 2.59 5.97 -2.38 -0.01 2.58 16 41 H 0.42 12.04 8.67 -96.74 -0.84 11.20 16 42 H 0.12 4.96 7.32 -2.91 -0.02 4.94 16 43 H 0.13 4.40 8.06 -2.91 -0.02 4.37 16 44 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 45 H 0.10 4.99 6.62 -2.91 -0.02 4.97 16 46 H 0.29 13.99 6.34 -92.71 -0.59 13.40 16 Total: -1.00 -58.04 361.93 0.46 -57.58 By element: Atomic # 1 Polarization: 45.63 SS G_CDS: 0.30 Total: 45.93 kcal Atomic # 6 Polarization: -91.64 SS G_CDS: 3.39 Total: -88.25 kcal Atomic # 7 Polarization: -75.37 SS G_CDS: -0.86 Total: -76.23 kcal Atomic # 8 Polarization: -94.26 SS G_CDS: -4.08 Total: -98.35 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 2.02 Total: 41.34 kcal Atomic # 16 Polarization: 118.28 SS G_CDS: -0.31 Total: 117.98 kcal Total: -58.04 0.46 -57.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882575436.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.347 kcal (2) G-P(sol) polarization free energy of solvation -58.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds