Wall clock time and date at job start Tue Mar 31 2020 15:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46859 * 2 1 4 4 C 1.53002 * 109.46859 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47031 * 55.00223 * 4 3 2 6 6 C 1.52999 * 109.47221 * 295.00160 * 4 3 2 7 7 C 1.53001 * 109.46806 * 175.00060 * 4 3 2 8 8 C 1.53006 * 109.46896 * 185.48609 * 7 4 3 9 9 N 1.46494 * 109.46740 * 182.56368 * 8 7 4 10 10 S 1.65603 * 119.99953 * 165.49898 * 9 8 7 11 11 O 1.42095 * 106.40603 * 175.91050 * 10 9 8 12 12 O 1.42101 * 106.39825 * 308.83039 * 10 9 8 13 13 C 1.76198 * 107.21808 * 62.36607 * 10 9 8 14 14 C 1.37641 * 120.13237 * 246.12334 * 13 10 9 15 15 C 1.38604 * 120.25375 * 179.97438 * 14 13 10 16 16 C 1.38663 * 120.49823 * 0.02651 * 15 14 13 17 17 C 1.37593 * 120.24958 * 0.02562 * 16 15 14 18 18 C 1.40702 * 120.12522 * 65.85494 * 13 10 9 19 19 C 1.41395 * 120.24376 * 359.97438 * 18 13 10 20 20 H 1.08001 * 119.99835 * 327.44360 * 19 18 13 21 21 C 1.39944 * 119.99752 * 147.44128 * 19 18 13 22 22 N 1.30821 * 119.99871 * 349.00859 * 21 19 18 23 23 Si 1.86802 * 120.00027 * 169.01263 * 21 19 18 24 24 H 1.48503 * 109.47121 * 64.99687 * 23 21 19 25 25 H 1.48494 * 109.47051 * 184.99820 * 23 21 19 26 26 H 1.48506 * 109.46930 * 304.99880 * 23 21 19 27 27 H 1.09005 * 109.46843 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46900 * 299.99317 * 1 2 3 29 29 H 1.08992 * 109.47282 * 60.00140 * 1 2 3 30 30 H 1.09000 * 109.46900 * 240.00683 * 2 1 3 31 31 H 1.08993 * 109.47304 * 120.00647 * 2 1 3 32 32 H 1.09000 * 109.46807 * 60.00626 * 3 2 1 33 33 H 1.08992 * 109.47059 * 299.99997 * 3 2 1 34 34 H 1.08998 * 109.46954 * 175.79968 * 6 4 3 35 35 H 1.08997 * 109.47362 * 295.80249 * 6 4 3 36 36 H 1.09000 * 109.47247 * 55.80638 * 6 4 3 37 37 H 1.08998 * 109.46946 * 305.48307 * 7 4 3 38 38 H 1.08995 * 109.47160 * 65.48844 * 7 4 3 39 39 H 1.08995 * 109.47111 * 302.56201 * 8 7 4 40 40 H 1.09000 * 109.47062 * 62.55912 * 8 7 4 41 41 H 0.96996 * 120.00781 * 345.49204 * 9 8 7 42 42 H 1.08002 * 119.87136 * 0.02562 * 14 13 10 43 43 H 1.08002 * 119.75392 * 180.02562 * 15 14 13 44 44 H 1.08001 * 119.87429 * 179.97438 * 16 15 14 45 45 H 1.08000 * 120.12926 * 179.97438 * 17 16 15 46 46 H 0.97010 * 119.99604 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9337 0.8530 -0.8410 6 6 4.0795 0.8331 1.3083 7 6 4.0800 2.8796 -0.1251 8 6 5.6039 2.8698 -0.2620 9 7 6.0977 4.2477 -0.3209 10 16 7.7102 4.5592 -0.1086 11 8 7.8802 5.9545 -0.3165 12 8 8.0916 3.9001 1.0912 13 6 8.5737 3.7525 -1.4155 14 6 9.4225 2.7047 -1.1395 15 6 10.1026 2.0679 -2.1657 16 6 9.9374 2.4778 -3.4800 17 6 9.0949 3.5237 -3.7792 18 6 8.3940 4.1733 -2.7460 19 6 7.5199 5.2445 -3.0423 20 1 6.6377 5.4039 -2.4401 21 6 7.7981 6.0981 -4.1158 22 7 8.9627 6.0445 -4.7093 23 14 6.5066 7.3142 -4.7011 24 1 6.2439 8.3104 -3.6315 25 1 6.9978 8.0111 -5.9168 26 1 5.2512 6.5878 -5.0200 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6766 1.9563 -0.8899 34 1 5.1669 0.7645 1.2777 35 1 3.7785 1.4639 2.1447 36 1 3.6560 -0.1634 1.4339 37 1 3.6390 3.3458 -1.0061 38 1 3.7987 3.4440 0.7639 39 1 6.0426 2.3630 0.5974 40 1 5.8832 2.3443 -1.1752 41 1 5.4802 4.9777 -0.4843 42 1 9.5584 2.3769 -0.1194 43 1 10.7663 1.2463 -1.9399 44 1 10.4726 1.9747 -4.2717 45 1 8.9680 3.8416 -4.8035 46 1 9.1556 6.6365 -5.4532 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882575437.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:51 Heat of formation + Delta-G solvation = -96.165867 kcal Electronic energy + Delta-G solvation = -26059.446163 eV Core-core repulsion = 22460.197145 eV Total energy + Delta-G solvation = -3599.249017 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -37.83303 -37.58008 -36.18041 -34.97918 -34.79269 -33.83855 -32.41918 -30.21248 -29.57991 -27.99945 -26.82425 -25.51683 -23.44762 -21.67132 -21.25786 -21.08566 -20.04452 -18.50544 -17.67661 -16.74766 -16.20365 -15.76885 -15.44486 -15.31940 -14.90366 -14.39288 -14.30017 -13.97050 -13.63905 -13.41039 -13.27243 -13.13356 -12.72580 -12.56934 -12.06978 -11.98060 -11.89811 -11.69344 -11.50917 -11.45562 -11.28326 -11.25379 -11.14116 -11.05544 -10.98128 -10.89664 -10.70873 -10.59428 -10.53023 -10.48324 -10.17773 -9.88733 -9.45007 -9.37076 -8.73294 -8.03364 -7.57485 -7.00243 -4.74388 1.57167 2.34050 2.74468 2.97702 3.00491 3.12824 3.80064 3.96776 4.43212 4.59490 4.74653 4.75862 4.84283 5.01939 5.18015 5.19729 5.28594 5.39325 5.48441 5.59013 5.59360 5.66246 5.74730 5.75201 5.79911 5.87075 5.94485 6.03633 6.04317 6.09710 6.14313 6.18823 6.23432 6.36028 6.39299 6.44156 6.51430 6.80428 6.93608 7.08446 7.31500 7.48268 7.57147 7.68174 7.79329 7.90142 8.28303 8.52999 8.64482 9.94943 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011102 B = 0.004037 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.473394 B = 6933.575808 C = 7769.592004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.114 4.114 4 C -0.092 4.092 5 H 0.074 0.926 6 C -0.154 4.154 7 C -0.121 4.121 8 C 0.122 3.878 9 N -1.123 6.123 10 S 2.700 3.300 11 O -0.964 6.964 12 O -0.999 6.999 13 C -0.772 4.772 14 C -0.004 4.004 15 C -0.248 4.248 16 C -0.077 4.077 17 C -0.155 4.155 18 C 0.190 3.810 19 C -0.452 4.452 20 H 0.087 0.913 21 C 0.082 3.918 22 N -0.781 5.781 23 Si 0.913 3.087 24 H -0.257 1.257 25 H -0.275 1.275 26 H -0.260 1.260 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.410 0.590 42 H 0.108 0.892 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.120 0.880 46 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.224 -7.620 4.113 14.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.152 4.152 4 C -0.111 4.111 5 H 0.092 0.908 6 C -0.211 4.211 7 C -0.160 4.160 8 C -0.005 4.005 9 N -0.880 5.880 10 S 2.798 3.202 11 O -0.954 6.954 12 O -0.990 6.990 13 C -0.867 4.867 14 C -0.024 4.024 15 C -0.269 4.269 16 C -0.095 4.095 17 C -0.175 4.175 18 C 0.186 3.814 19 C -0.480 4.480 20 H 0.105 0.895 21 C -0.139 4.139 22 N -0.404 5.404 23 Si 0.736 3.264 24 H -0.181 1.181 25 H -0.199 1.199 26 H -0.184 1.184 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.243 0.757 42 H 0.126 0.874 43 H 0.113 0.887 44 H 0.112 0.888 45 H 0.138 0.862 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.609 -7.135 4.678 14.407 hybrid contribution -0.497 0.427 -1.174 1.345 sum -12.106 -6.708 3.504 14.277 Atomic orbital electron populations 1.21782 0.96226 1.01330 1.01681 1.21600 0.95475 0.97252 1.02137 1.21654 0.94935 0.96587 1.02002 1.21127 0.95046 0.96126 0.98808 0.90753 1.21982 1.01603 1.00521 0.97018 1.21839 0.94808 0.96741 1.02610 1.21209 0.94799 0.82627 1.01818 1.55658 1.27576 1.13719 1.91033 1.01074 0.72008 0.73539 0.73621 1.93545 1.84436 1.30663 1.86797 1.93442 1.82329 1.77483 1.45709 1.29941 1.23814 1.20154 1.12772 1.20271 0.92436 0.91998 0.97703 1.20500 1.07919 1.05033 0.93420 1.20901 0.96856 0.96364 0.95427 1.21423 1.00462 0.96100 0.99527 1.16995 0.87727 0.88144 0.88571 1.19770 1.08145 1.08545 1.11567 0.89517 1.25903 0.95774 0.97767 0.94419 1.69769 1.20100 1.32909 1.17611 0.86251 0.80872 0.80308 0.78923 1.18145 1.19949 1.18385 0.93027 0.92903 0.92853 0.92057 0.91780 0.92065 0.91961 0.92063 0.92684 0.92621 0.91195 0.91370 0.90853 0.91804 0.75705 0.87398 0.88690 0.88786 0.86218 0.90151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 2 C -0.13 -1.03 5.69 -26.73 -0.15 -1.18 16 3 C -0.11 -1.01 4.68 -26.73 -0.13 -1.14 16 4 C -0.09 -0.93 2.38 -90.62 -0.22 -1.15 16 5 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 6 C -0.15 -1.53 8.71 37.16 0.32 -1.21 16 7 C -0.12 -1.41 4.82 -26.73 -0.13 -1.54 16 8 C 0.12 1.82 6.01 -4.04 -0.02 1.79 16 9 N -1.12 -19.50 5.12 -10.62 -0.05 -19.55 16 10 S 2.70 59.49 4.97 -107.50 -0.53 58.95 16 11 O -0.96 -24.26 16.57 -57.17 -0.95 -25.21 16 12 O -1.00 -22.90 16.54 -57.17 -0.95 -23.84 16 13 C -0.77 -18.50 5.89 -38.87 -0.23 -18.73 16 14 C 0.00 -0.10 9.53 -39.66 -0.38 -0.47 16 15 C -0.25 -5.42 10.05 -39.29 -0.39 -5.81 16 16 C -0.08 -1.71 10.02 -39.66 -0.40 -2.11 16 17 C -0.16 -3.83 8.64 -38.87 -0.34 -4.17 16 18 C 0.19 4.84 5.50 -106.82 -0.59 4.26 16 19 C -0.45 -11.34 7.48 -37.74 -0.28 -11.62 16 20 H 0.09 2.02 6.06 -52.49 -0.32 1.70 16 21 C 0.08 1.99 5.23 -17.34 -0.09 1.90 16 22 N -0.78 -19.44 11.10 55.55 0.62 -18.82 16 23 Si 0.91 18.07 29.57 -169.99 -5.03 13.05 16 24 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 25 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 26 H -0.26 -4.91 7.11 56.52 0.40 -4.50 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.51 6.48 -51.93 -0.34 0.17 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.66 6.73 -51.93 -0.35 0.31 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.05 0.49 6.38 -51.93 -0.33 0.15 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.07 1.09 6.24 -51.93 -0.32 0.77 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.41 6.31 8.52 -34.46 -0.29 6.02 16 42 H 0.11 2.26 7.32 -52.49 -0.38 1.88 16 43 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 44 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 45 H 0.12 2.97 6.51 -52.49 -0.34 2.63 16 46 H 0.29 6.47 8.30 -40.82 -0.34 6.13 16 LS Contribution 377.96 15.07 5.70 5.70 Total: -1.00 -30.19 377.96 -11.16 -41.35 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -7.31 Total: 10.31 kcal Atomic # 6 Polarization: -39.27 SS G_CDS: -2.65 Total: -41.92 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.56 Total: -38.38 kcal Atomic # 8 Polarization: -47.16 SS G_CDS: -1.89 Total: -49.05 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.05 kcal Atomic # 16 Polarization: 59.49 SS G_CDS: -0.53 Total: 58.95 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.19 -11.16 -41.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882575437.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.818 kcal (2) G-P(sol) polarization free energy of solvation -30.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds