Wall clock time and date at job start Tue Mar 31 2020 15:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46859 * 2 1 4 4 C 1.53002 * 109.46859 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47031 * 55.00223 * 4 3 2 6 6 C 1.52999 * 109.47221 * 295.00160 * 4 3 2 7 7 C 1.53001 * 109.46806 * 175.00060 * 4 3 2 8 8 C 1.53006 * 109.46896 * 185.48609 * 7 4 3 9 9 N 1.46494 * 109.46740 * 182.56368 * 8 7 4 10 10 S 1.65603 * 119.99953 * 165.49898 * 9 8 7 11 11 O 1.42095 * 106.40603 * 175.91050 * 10 9 8 12 12 O 1.42101 * 106.39825 * 308.83039 * 10 9 8 13 13 C 1.76198 * 107.21808 * 62.36607 * 10 9 8 14 14 C 1.37641 * 120.13237 * 246.12334 * 13 10 9 15 15 C 1.38604 * 120.25375 * 179.97438 * 14 13 10 16 16 C 1.38663 * 120.49823 * 0.02651 * 15 14 13 17 17 C 1.37593 * 120.24958 * 0.02562 * 16 15 14 18 18 C 1.40702 * 120.12522 * 65.85494 * 13 10 9 19 19 C 1.41395 * 120.24376 * 359.97438 * 18 13 10 20 20 H 1.08001 * 119.99835 * 327.44360 * 19 18 13 21 21 C 1.39944 * 119.99752 * 147.44128 * 19 18 13 22 22 N 1.30821 * 119.99871 * 349.00859 * 21 19 18 23 23 Si 1.86802 * 120.00027 * 169.01263 * 21 19 18 24 24 H 1.48503 * 109.47121 * 64.99687 * 23 21 19 25 25 H 1.48494 * 109.47051 * 184.99820 * 23 21 19 26 26 H 1.48506 * 109.46930 * 304.99880 * 23 21 19 27 27 H 1.09005 * 109.46843 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46900 * 299.99317 * 1 2 3 29 29 H 1.08992 * 109.47282 * 60.00140 * 1 2 3 30 30 H 1.09000 * 109.46900 * 240.00683 * 2 1 3 31 31 H 1.08993 * 109.47304 * 120.00647 * 2 1 3 32 32 H 1.09000 * 109.46807 * 60.00626 * 3 2 1 33 33 H 1.08992 * 109.47059 * 299.99997 * 3 2 1 34 34 H 1.08998 * 109.46954 * 175.79968 * 6 4 3 35 35 H 1.08997 * 109.47362 * 295.80249 * 6 4 3 36 36 H 1.09000 * 109.47247 * 55.80638 * 6 4 3 37 37 H 1.08998 * 109.46946 * 305.48307 * 7 4 3 38 38 H 1.08995 * 109.47160 * 65.48844 * 7 4 3 39 39 H 1.08995 * 109.47111 * 302.56201 * 8 7 4 40 40 H 1.09000 * 109.47062 * 62.55912 * 8 7 4 41 41 H 0.96996 * 120.00781 * 345.49204 * 9 8 7 42 42 H 1.08002 * 119.87136 * 0.02562 * 14 13 10 43 43 H 1.08002 * 119.75392 * 180.02562 * 15 14 13 44 44 H 1.08001 * 119.87429 * 179.97438 * 16 15 14 45 45 H 1.08000 * 120.12926 * 179.97438 * 17 16 15 46 46 H 0.97010 * 119.99604 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9337 0.8530 -0.8410 6 6 4.0795 0.8331 1.3083 7 6 4.0800 2.8796 -0.1251 8 6 5.6039 2.8698 -0.2620 9 7 6.0977 4.2477 -0.3209 10 16 7.7102 4.5592 -0.1086 11 8 7.8802 5.9545 -0.3165 12 8 8.0916 3.9001 1.0912 13 6 8.5737 3.7525 -1.4155 14 6 9.4225 2.7047 -1.1395 15 6 10.1026 2.0679 -2.1657 16 6 9.9374 2.4778 -3.4800 17 6 9.0949 3.5237 -3.7792 18 6 8.3940 4.1733 -2.7460 19 6 7.5199 5.2445 -3.0423 20 1 6.6377 5.4039 -2.4401 21 6 7.7981 6.0981 -4.1158 22 7 8.9627 6.0445 -4.7093 23 14 6.5066 7.3142 -4.7011 24 1 6.2439 8.3104 -3.6315 25 1 6.9978 8.0111 -5.9168 26 1 5.2512 6.5878 -5.0200 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6766 1.9563 -0.8899 34 1 5.1669 0.7645 1.2777 35 1 3.7785 1.4639 2.1447 36 1 3.6560 -0.1634 1.4339 37 1 3.6390 3.3458 -1.0061 38 1 3.7987 3.4440 0.7639 39 1 6.0426 2.3630 0.5974 40 1 5.8832 2.3443 -1.1752 41 1 5.4802 4.9777 -0.4843 42 1 9.5584 2.3769 -0.1194 43 1 10.7663 1.2463 -1.9399 44 1 10.4726 1.9747 -4.2717 45 1 8.9680 3.8416 -4.8035 46 1 9.1556 6.6365 -5.4532 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882575437.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:50 Heat of formation + Delta-G solvation = -113.471628 kcal Electronic energy + Delta-G solvation = -26060.196597 eV Core-core repulsion = 22460.197145 eV Total energy + Delta-G solvation = -3599.999451 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.38917 -38.72053 -38.00084 -36.65706 -36.11412 -35.61582 -33.30518 -32.01488 -31.38584 -29.03731 -27.54879 -27.33260 -24.44116 -23.45346 -22.94783 -22.01389 -20.92930 -20.11766 -19.48692 -18.43192 -17.85576 -17.26351 -16.96592 -16.35171 -16.10510 -15.90909 -15.70616 -15.11997 -14.97826 -14.82657 -14.55581 -14.44686 -14.22986 -13.72439 -13.40178 -13.27253 -13.09384 -12.98759 -12.94807 -12.85308 -12.78132 -12.74575 -12.64000 -12.47956 -12.41462 -12.17885 -12.16619 -11.70235 -11.65035 -11.39263 -11.25126 -11.18566 -11.12138 -11.04949 -10.21413 -9.84280 -9.40845 -8.78100 -6.60856 -0.15189 0.52267 0.97127 1.36699 1.48266 1.52338 2.16985 2.36619 2.65150 2.98920 3.46157 3.73263 3.91180 3.98661 4.01255 4.28221 4.32686 4.33459 4.44061 4.49342 4.51735 4.65392 4.68188 4.71457 4.77719 4.88692 4.95487 4.99666 5.00830 5.09702 5.12908 5.19486 5.22134 5.28154 5.30252 5.34888 5.38877 5.46258 5.52082 5.61416 5.63862 5.69834 5.81233 5.98434 6.08470 6.26026 6.46542 6.69487 6.82389 8.19991 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011102 B = 0.004037 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.473394 B = 6933.575808 C = 7769.592004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.110 4.110 4 C -0.089 4.089 5 H 0.070 0.930 6 C -0.155 4.155 7 C -0.115 4.115 8 C 0.116 3.884 9 N -1.111 6.111 10 S 2.718 3.282 11 O -1.000 7.000 12 O -1.010 7.010 13 C -0.789 4.789 14 C -0.018 4.018 15 C -0.247 4.247 16 C -0.075 4.075 17 C -0.183 4.183 18 C 0.166 3.834 19 C -0.482 4.482 20 H 0.094 0.906 21 C 0.039 3.961 22 N -0.814 5.814 23 Si 0.975 3.025 24 H -0.263 1.263 25 H -0.263 1.263 26 H -0.244 1.244 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.048 0.952 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.056 0.944 41 H 0.420 0.580 42 H 0.123 0.877 43 H 0.129 0.871 44 H 0.124 0.876 45 H 0.109 0.891 46 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.647 -8.423 4.306 16.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.148 4.148 4 C -0.108 4.108 5 H 0.088 0.912 6 C -0.212 4.212 7 C -0.154 4.154 8 C -0.010 4.010 9 N -0.871 5.871 10 S 2.815 3.185 11 O -0.990 6.990 12 O -1.000 7.000 13 C -0.883 4.883 14 C -0.037 4.037 15 C -0.267 4.267 16 C -0.094 4.094 17 C -0.203 4.203 18 C 0.161 3.839 19 C -0.510 4.510 20 H 0.112 0.888 21 C -0.178 4.178 22 N -0.438 5.438 23 Si 0.794 3.206 24 H -0.187 1.187 25 H -0.187 1.187 26 H -0.167 1.167 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.075 0.925 41 H 0.256 0.744 42 H 0.141 0.859 43 H 0.147 0.853 44 H 0.142 0.858 45 H 0.127 0.873 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.018 -7.957 4.862 16.014 hybrid contribution 0.003 0.557 -1.165 1.291 sum -13.015 -7.400 3.697 15.422 Atomic orbital electron populations 1.21776 0.95591 1.01791 1.01810 1.21592 0.96036 0.96641 1.02149 1.21612 0.93691 0.97232 1.02223 1.21108 0.96039 0.94885 0.98806 0.91153 1.21991 1.00861 1.01374 0.96970 1.21827 0.92119 0.98123 1.03314 1.21434 0.97154 0.80880 1.01496 1.55281 1.25868 1.15332 1.90669 1.00375 0.72825 0.72368 0.72960 1.93489 1.85557 1.32841 1.87117 1.93419 1.83176 1.77449 1.45969 1.30233 1.24644 1.20472 1.12910 1.20601 0.92323 0.91929 0.98883 1.20918 1.07536 1.05405 0.92871 1.21258 0.95917 0.95442 0.96742 1.21488 1.02183 0.97545 0.99083 1.17309 0.88430 0.88777 0.89350 1.20083 1.08813 1.09272 1.12835 0.88787 1.26785 0.97584 0.99272 0.94164 1.69818 1.21612 1.34107 1.18312 0.85345 0.78852 0.77915 0.78477 1.18703 1.18750 1.16702 0.92446 0.92601 0.92909 0.92343 0.91495 0.91611 0.91974 0.93269 0.92381 0.91368 0.90662 0.90460 0.90847 0.92534 0.74424 0.85924 0.85314 0.85832 0.87294 0.89500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.91 71.98 0.71 -1.23 16 2 C -0.13 -1.81 5.69 30.60 0.17 -1.64 16 3 C -0.11 -1.73 4.68 30.60 0.14 -1.59 16 4 C -0.09 -1.66 2.38 -10.79 -0.03 -1.69 16 5 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 6 C -0.15 -2.83 8.71 71.98 0.63 -2.21 16 7 C -0.11 -2.50 4.82 30.60 0.15 -2.35 16 8 C 0.12 3.37 6.01 86.38 0.52 3.89 16 9 N -1.11 -38.12 5.12 -187.50 -0.96 -39.08 16 10 S 2.72 120.26 4.97 -56.49 -0.28 119.98 16 11 O -1.00 -51.07 16.57 -128.00 -2.12 -53.19 16 12 O -1.01 -45.98 16.54 -128.00 -2.12 -48.10 16 13 C -0.79 -38.07 5.89 22.73 0.13 -37.94 16 14 C -0.02 -0.79 9.53 22.22 0.21 -0.58 16 15 C -0.25 -10.38 10.05 22.46 0.23 -10.15 16 16 C -0.07 -3.28 10.02 22.22 0.22 -3.06 16 17 C -0.18 -9.16 8.64 22.73 0.20 -8.97 16 18 C 0.17 8.58 5.50 -21.29 -0.12 8.46 16 19 C -0.48 -24.58 7.48 23.46 0.18 -24.40 16 20 H 0.09 4.44 6.06 -2.91 -0.02 4.42 16 21 C 0.04 1.92 5.23 85.26 0.45 2.37 16 22 N -0.81 -41.33 11.10 21.83 0.24 -41.09 16 23 Si 0.97 36.82 29.57 68.60 2.03 38.85 16 24 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 25 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 26 H -0.24 -8.49 7.11 99.48 0.71 -7.78 16 27 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 0.92 6.48 -2.39 -0.02 0.90 16 32 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.05 1.01 6.73 -2.39 -0.02 0.99 16 35 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.07 1.06 6.38 -2.39 -0.02 1.05 16 37 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.07 2.14 6.24 -2.39 -0.01 2.13 16 40 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.42 12.67 8.52 -96.75 -0.82 11.85 16 42 H 0.12 5.02 7.32 -2.91 -0.02 5.00 16 43 H 0.13 4.47 8.06 -2.91 -0.02 4.44 16 44 H 0.12 4.56 8.06 -2.91 -0.02 4.53 16 45 H 0.11 5.57 6.51 -2.91 -0.02 5.55 16 46 H 0.29 13.44 8.30 -92.70 -0.77 12.68 16 Total: -1.00 -64.76 377.96 0.73 -64.02 By element: Atomic # 1 Polarization: 39.54 SS G_CDS: 0.15 Total: 39.68 kcal Atomic # 6 Polarization: -84.87 SS G_CDS: 3.79 Total: -81.08 kcal Atomic # 7 Polarization: -79.45 SS G_CDS: -0.72 Total: -80.17 kcal Atomic # 8 Polarization: -97.05 SS G_CDS: -4.24 Total: -101.29 kcal Atomic # 14 Polarization: 36.82 SS G_CDS: 2.03 Total: 38.85 kcal Atomic # 16 Polarization: 120.26 SS G_CDS: -0.28 Total: 119.98 kcal Total: -64.76 0.73 -64.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882575437.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.447 kcal (2) G-P(sol) polarization free energy of solvation -64.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds