Wall clock time and date at job start Tue Mar 31 2020 15:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47303 * 2 1 4 4 C 1.52994 * 109.47303 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47403 * 304.99917 * 4 3 2 6 6 C 1.53000 * 109.47282 * 64.99586 * 4 3 2 7 7 C 1.52999 * 109.47279 * 184.99559 * 4 3 2 8 8 C 1.53003 * 109.47154 * 174.99675 * 7 4 3 9 9 N 1.46506 * 109.46887 * 180.02562 * 8 7 4 10 10 S 1.65600 * 119.99500 * 165.00599 * 9 8 7 11 11 O 1.42102 * 106.40353 * 311.45237 * 10 9 8 12 12 O 1.42101 * 106.39748 * 178.54147 * 10 9 8 13 13 C 1.76193 * 107.22282 * 64.99745 * 10 9 8 14 14 C 1.38649 * 119.87686 * 270.29710 * 13 10 9 15 15 C 1.38617 * 120.50384 * 180.25774 * 14 13 10 16 16 C 1.37641 * 120.24556 * 359.44340 * 15 14 13 17 17 C 1.40700 * 119.74456 * 0.27362 * 16 15 14 18 18 C 1.41393 * 120.24808 * 179.97438 * 17 16 15 19 19 H 1.07994 * 120.00329 * 204.39358 * 18 17 16 20 20 C 1.39942 * 119.99793 * 24.38823 * 18 17 16 21 21 N 1.30830 * 119.99921 * 17.86190 * 20 18 17 22 22 Si 1.86807 * 120.00314 * 197.85679 * 20 18 17 23 23 H 1.48504 * 109.46564 * 60.00381 * 22 20 18 24 24 H 1.48498 * 109.47182 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.46916 * 300.00498 * 22 20 18 26 26 C 1.37604 * 119.87246 * 89.99680 * 13 10 9 27 27 H 1.09002 * 109.47344 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47078 * 300.00455 * 1 2 3 29 29 H 1.08997 * 109.47448 * 60.00416 * 1 2 3 30 30 H 1.09003 * 109.47078 * 239.99544 * 2 1 3 31 31 H 1.09006 * 109.46972 * 119.99850 * 2 1 3 32 32 H 1.09003 * 109.47425 * 59.99757 * 3 2 1 33 33 H 1.09006 * 109.46984 * 299.99843 * 3 2 1 34 34 H 1.09004 * 109.47034 * 60.00140 * 6 4 3 35 35 H 1.09003 * 109.47183 * 179.97438 * 6 4 3 36 36 H 1.08997 * 109.47219 * 300.00357 * 6 4 3 37 37 H 1.09006 * 109.46939 * 54.99945 * 7 4 3 38 38 H 1.09000 * 109.47372 * 295.00079 * 7 4 3 39 39 H 1.09001 * 109.46986 * 60.00798 * 8 7 4 40 40 H 1.08994 * 109.47351 * 299.99993 * 8 7 4 41 41 H 0.97002 * 120.00044 * 345.00152 * 9 8 7 42 42 H 1.08005 * 119.75337 * 359.97438 * 14 13 10 43 43 H 1.07992 * 119.88323 * 179.71839 * 15 14 13 44 44 H 1.07998 * 120.13267 * 180.25377 * 16 15 14 45 45 H 0.97008 * 119.99884 * 179.97438 * 21 20 18 46 46 H 1.07994 * 120.13007 * 0.04669 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5699 1.4424 0.0006 5 1 3.9329 0.8531 0.8427 6 6 4.0805 0.8325 -1.3063 7 6 4.0799 2.8795 0.1263 8 6 5.6047 2.8703 0.2524 9 7 6.0929 4.2463 0.3733 10 16 7.6393 4.5336 0.8915 11 8 7.8234 3.7470 2.0605 12 8 7.8149 5.9435 0.8679 13 6 8.7285 3.8760 -0.3273 14 6 9.1546 2.5598 -0.2348 15 6 10.0157 2.0307 -1.1835 16 6 10.4484 2.8053 -2.2358 17 6 10.0179 4.1405 -2.3431 18 6 10.4562 4.9459 -3.4194 19 1 10.4715 6.0209 -3.3181 20 6 10.8702 4.3499 -4.6159 21 7 10.5365 3.1128 -4.8803 22 14 11.8994 5.3206 -5.8359 23 1 13.1671 5.7430 -5.1880 24 1 12.2045 4.4694 -7.0138 25 1 11.1441 6.5212 -6.2756 26 6 9.1482 4.6687 -1.3708 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9563 -0.8901 34 1 3.7175 1.4218 -2.1485 35 1 5.1705 0.8330 -1.3061 36 1 3.7172 -0.1912 -1.3959 37 1 3.6449 3.3433 1.0116 38 1 3.7919 3.4459 -0.7593 39 1 6.0397 2.4066 -0.6330 40 1 5.8926 2.3039 1.1380 41 1 5.5104 4.9891 0.1497 42 1 8.8167 1.9434 0.5851 43 1 10.3449 1.0056 -1.0992 44 1 11.1161 2.3899 -2.9762 45 1 10.8232 2.6997 -5.7099 46 1 8.8118 5.6924 -1.4432 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882575767.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:54 Heat of formation + Delta-G solvation = -96.989444 kcal Electronic energy + Delta-G solvation = -25329.605685 eV Core-core repulsion = 21730.320955 eV Total energy + Delta-G solvation = -3599.284730 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -37.95166 -37.63256 -36.62987 -35.29152 -35.16223 -33.85133 -32.56049 -30.07995 -29.78721 -28.18171 -26.87602 -25.49429 -23.62080 -21.90290 -21.34059 -20.96444 -20.18724 -18.95719 -17.92833 -16.89597 -16.09685 -15.94847 -15.71931 -15.26058 -14.96931 -14.75645 -14.53179 -14.00687 -13.77849 -13.55367 -13.43312 -13.32046 -12.70249 -12.57874 -12.24580 -12.03173 -11.90636 -11.76538 -11.61532 -11.58499 -11.49806 -11.47648 -11.39215 -11.35944 -11.01412 -11.00682 -10.87371 -10.68414 -10.63401 -10.59058 -10.39206 -9.78908 -9.63910 -9.35079 -9.08325 -8.03999 -7.71023 -6.93565 -4.54153 1.06180 2.19978 2.63691 2.98797 3.01067 3.08107 3.60111 3.82077 4.25950 4.43583 4.48988 4.68283 4.74258 4.93580 4.99296 5.07368 5.16305 5.26246 5.39356 5.42921 5.51626 5.54517 5.60291 5.66483 5.72410 5.75041 5.82130 5.98677 6.00266 6.03065 6.04448 6.09018 6.17505 6.22567 6.31430 6.37764 6.65416 6.75921 6.84958 7.02601 7.20390 7.26696 7.38530 7.72464 7.80431 7.93989 8.39653 8.66301 8.71337 10.01806 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012552 B = 0.003133 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.251875 B = 8936.239578 C =10204.940611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.114 4.114 4 C -0.091 4.091 5 H 0.074 0.926 6 C -0.155 4.155 7 C -0.121 4.121 8 C 0.116 3.884 9 N -1.122 6.122 10 S 2.690 3.310 11 O -0.976 6.976 12 O -0.974 6.974 13 C -0.631 4.631 14 C -0.149 4.149 15 C -0.120 4.120 16 C -0.119 4.119 17 C 0.091 3.909 18 C -0.461 4.461 19 H 0.082 0.918 20 C 0.075 3.925 21 N -0.794 5.794 22 Si 0.912 3.088 23 H -0.262 1.262 24 H -0.278 1.278 25 H -0.264 1.264 26 C -0.124 4.124 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.413 0.587 42 H 0.106 0.894 43 H 0.098 0.902 44 H 0.125 0.875 45 H 0.284 0.716 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.950 -5.097 4.455 15.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.152 4.152 4 C -0.111 4.111 5 H 0.092 0.908 6 C -0.212 4.212 7 C -0.160 4.160 8 C -0.010 4.010 9 N -0.880 5.880 10 S 2.786 3.214 11 O -0.966 6.966 12 O -0.965 6.965 13 C -0.723 4.723 14 C -0.171 4.171 15 C -0.140 4.140 16 C -0.139 4.139 17 C 0.088 3.912 18 C -0.490 4.490 19 H 0.101 0.899 20 C -0.143 4.143 21 N -0.419 5.419 22 Si 0.736 3.264 23 H -0.187 1.187 24 H -0.202 1.202 25 H -0.188 1.188 26 C -0.145 4.145 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.246 0.754 42 H 0.124 0.876 43 H 0.116 0.884 44 H 0.142 0.858 45 H 0.095 0.905 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -13.608 -5.006 5.114 15.375 hybrid contribution 0.409 0.262 -1.519 1.595 sum -13.199 -4.743 3.596 14.479 Atomic orbital electron populations 1.21781 0.96180 1.01397 1.01673 1.21594 0.95521 0.97167 1.02203 1.21657 0.94822 0.96701 1.01990 1.21129 0.95143 0.95817 0.98972 0.90807 1.21988 1.01830 1.00585 0.96839 1.21829 0.94379 0.97112 1.02652 1.21351 0.95205 0.82025 1.02393 1.55548 1.31959 1.13633 1.86836 1.01606 0.72469 0.73068 0.74301 1.93506 1.85374 1.71785 1.45977 1.93534 1.85277 1.30133 1.87545 1.29746 1.20170 1.05094 1.17298 1.20079 1.03644 0.93117 1.00214 1.20806 0.99159 0.98364 0.95665 1.21635 1.00114 0.95179 0.96936 1.17685 0.89363 0.92526 0.91653 1.19589 1.37850 0.95039 0.96501 0.89946 1.25933 0.94192 0.95094 0.99062 1.69777 1.34594 1.13408 1.24152 0.86298 0.80895 0.80257 0.78958 1.18665 1.20248 1.18827 1.20783 0.99928 0.98274 0.95541 0.92973 0.92902 0.92848 0.91683 0.92088 0.92066 0.91954 0.92581 0.91859 0.92570 0.91297 0.91159 0.91073 0.90582 0.75413 0.87638 0.88408 0.85755 0.90538 0.87068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.15 0.37 -0.67 16 2 C -0.13 -0.96 5.69 -26.74 -0.15 -1.11 16 3 C -0.11 -0.91 4.68 -26.74 -0.13 -1.04 16 4 C -0.09 -0.83 2.39 -90.62 -0.22 -1.05 16 5 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 6 C -0.16 -1.52 8.70 37.16 0.32 -1.19 16 7 C -0.12 -1.21 4.82 -26.73 -0.13 -1.34 16 8 C 0.12 1.51 5.98 -4.04 -0.02 1.48 16 9 N -1.12 -16.21 6.00 -10.61 -0.06 -16.27 16 10 S 2.69 50.58 5.73 -107.50 -0.62 49.96 16 11 O -0.98 -19.95 16.75 -57.17 -0.96 -20.91 16 12 O -0.97 -20.57 17.27 -57.17 -0.99 -21.56 16 13 C -0.63 -13.76 5.94 -39.66 -0.24 -13.99 16 14 C -0.15 -3.22 9.53 -39.29 -0.37 -3.59 16 15 C -0.12 -2.68 10.02 -39.66 -0.40 -3.08 16 16 C -0.12 -2.95 8.70 -38.87 -0.34 -3.28 16 17 C 0.09 2.35 5.58 -106.82 -0.60 1.76 16 18 C -0.46 -11.80 9.05 -37.74 -0.34 -12.14 16 19 H 0.08 2.03 7.91 -52.49 -0.42 1.62 16 20 C 0.08 1.81 5.14 -17.34 -0.09 1.72 16 21 N -0.79 -19.48 10.95 55.55 0.61 -18.88 16 22 Si 0.91 18.01 29.60 -169.99 -5.03 12.98 16 23 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 24 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 25 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 26 C -0.12 -2.98 9.26 -38.87 -0.36 -3.34 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.50 6.57 -51.93 -0.34 0.15 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.69 6.56 -51.93 -0.34 0.35 16 36 H 0.06 0.49 6.57 -51.93 -0.34 0.15 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.97 6.56 -51.93 -0.34 0.63 16 40 H 0.08 0.99 7.75 -51.93 -0.40 0.59 16 41 H 0.41 4.99 8.65 -34.48 -0.30 4.69 16 42 H 0.11 2.04 7.61 -52.48 -0.40 1.64 16 43 H 0.10 1.90 8.06 -52.49 -0.42 1.47 16 44 H 0.12 3.13 6.15 -52.49 -0.32 2.81 16 45 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 46 H 0.11 2.57 7.60 -52.49 -0.40 2.17 16 LS Contribution 382.72 15.07 5.77 5.77 Total: -1.00 -29.84 382.72 -11.35 -41.19 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -7.39 Total: 8.59 kcal Atomic # 6 Polarization: -38.18 SS G_CDS: -2.69 Total: -40.87 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: 0.54 Total: -35.15 kcal Atomic # 8 Polarization: -40.52 SS G_CDS: -1.94 Total: -42.47 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.03 Total: 12.98 kcal Atomic # 16 Polarization: 50.58 SS G_CDS: -0.62 Total: 49.96 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.84 -11.35 -41.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882575767.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.801 kcal (2) G-P(sol) polarization free energy of solvation -29.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds