Wall clock time and date at job start Tue Mar 31 2020 15:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47303 * 2 1 4 4 C 1.52994 * 109.47303 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47403 * 304.99917 * 4 3 2 6 6 C 1.53000 * 109.47282 * 64.99586 * 4 3 2 7 7 C 1.52999 * 109.47279 * 184.99559 * 4 3 2 8 8 C 1.53003 * 109.47154 * 174.99675 * 7 4 3 9 9 N 1.46506 * 109.46887 * 180.02562 * 8 7 4 10 10 S 1.65600 * 119.99500 * 165.00599 * 9 8 7 11 11 O 1.42102 * 106.40353 * 311.45237 * 10 9 8 12 12 O 1.42101 * 106.39748 * 178.54147 * 10 9 8 13 13 C 1.76193 * 107.22282 * 64.99745 * 10 9 8 14 14 C 1.38649 * 119.87686 * 270.29710 * 13 10 9 15 15 C 1.38617 * 120.50384 * 180.25774 * 14 13 10 16 16 C 1.37641 * 120.24556 * 359.44340 * 15 14 13 17 17 C 1.40700 * 119.74456 * 0.27362 * 16 15 14 18 18 C 1.41393 * 120.24808 * 179.97438 * 17 16 15 19 19 H 1.07994 * 120.00329 * 204.39358 * 18 17 16 20 20 C 1.39942 * 119.99793 * 24.38823 * 18 17 16 21 21 N 1.30830 * 119.99921 * 17.86190 * 20 18 17 22 22 Si 1.86807 * 120.00314 * 197.85679 * 20 18 17 23 23 H 1.48504 * 109.46564 * 60.00381 * 22 20 18 24 24 H 1.48498 * 109.47182 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.46916 * 300.00498 * 22 20 18 26 26 C 1.37604 * 119.87246 * 89.99680 * 13 10 9 27 27 H 1.09002 * 109.47344 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47078 * 300.00455 * 1 2 3 29 29 H 1.08997 * 109.47448 * 60.00416 * 1 2 3 30 30 H 1.09003 * 109.47078 * 239.99544 * 2 1 3 31 31 H 1.09006 * 109.46972 * 119.99850 * 2 1 3 32 32 H 1.09003 * 109.47425 * 59.99757 * 3 2 1 33 33 H 1.09006 * 109.46984 * 299.99843 * 3 2 1 34 34 H 1.09004 * 109.47034 * 60.00140 * 6 4 3 35 35 H 1.09003 * 109.47183 * 179.97438 * 6 4 3 36 36 H 1.08997 * 109.47219 * 300.00357 * 6 4 3 37 37 H 1.09006 * 109.46939 * 54.99945 * 7 4 3 38 38 H 1.09000 * 109.47372 * 295.00079 * 7 4 3 39 39 H 1.09001 * 109.46986 * 60.00798 * 8 7 4 40 40 H 1.08994 * 109.47351 * 299.99993 * 8 7 4 41 41 H 0.97002 * 120.00044 * 345.00152 * 9 8 7 42 42 H 1.08005 * 119.75337 * 359.97438 * 14 13 10 43 43 H 1.07992 * 119.88323 * 179.71839 * 15 14 13 44 44 H 1.07998 * 120.13267 * 180.25377 * 16 15 14 45 45 H 0.97008 * 119.99884 * 179.97438 * 21 20 18 46 46 H 1.07994 * 120.13007 * 0.04669 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5699 1.4424 0.0006 5 1 3.9329 0.8531 0.8427 6 6 4.0805 0.8325 -1.3063 7 6 4.0799 2.8795 0.1263 8 6 5.6047 2.8703 0.2524 9 7 6.0929 4.2463 0.3733 10 16 7.6393 4.5336 0.8915 11 8 7.8234 3.7470 2.0605 12 8 7.8149 5.9435 0.8679 13 6 8.7285 3.8760 -0.3273 14 6 9.1546 2.5598 -0.2348 15 6 10.0157 2.0307 -1.1835 16 6 10.4484 2.8053 -2.2358 17 6 10.0179 4.1405 -2.3431 18 6 10.4562 4.9459 -3.4194 19 1 10.4715 6.0209 -3.3181 20 6 10.8702 4.3499 -4.6159 21 7 10.5365 3.1128 -4.8803 22 14 11.8994 5.3206 -5.8359 23 1 13.1671 5.7430 -5.1880 24 1 12.2045 4.4694 -7.0138 25 1 11.1441 6.5212 -6.2756 26 6 9.1482 4.6687 -1.3708 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9563 -0.8901 34 1 3.7175 1.4218 -2.1485 35 1 5.1705 0.8330 -1.3061 36 1 3.7172 -0.1912 -1.3959 37 1 3.6449 3.3433 1.0116 38 1 3.7919 3.4459 -0.7593 39 1 6.0397 2.4066 -0.6330 40 1 5.8926 2.3039 1.1380 41 1 5.5104 4.9891 0.1497 42 1 8.8167 1.9434 0.5851 43 1 10.3449 1.0056 -1.0992 44 1 11.1161 2.3899 -2.9762 45 1 10.8232 2.6997 -5.7099 46 1 8.8118 5.6924 -1.4432 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882575767.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:53 Heat of formation + Delta-G solvation = -114.106692 kcal Electronic energy + Delta-G solvation = -25330.347945 eV Core-core repulsion = 21730.320955 eV Total energy + Delta-G solvation = -3600.026990 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.44889 -38.76562 -38.21825 -36.90754 -36.15699 -35.66895 -33.34011 -31.91585 -31.58550 -29.09225 -27.56172 -27.34785 -24.49709 -23.66671 -22.80552 -22.03014 -21.03494 -20.42109 -19.57900 -18.37325 -17.73578 -17.35771 -16.86713 -16.60225 -16.38799 -16.04170 -15.73322 -15.25483 -15.05895 -14.76021 -14.62444 -14.31013 -14.29028 -13.71387 -13.52132 -13.31757 -13.22207 -13.12648 -13.08296 -13.03437 -12.83231 -12.80016 -12.60894 -12.59196 -12.47091 -12.23368 -12.18664 -11.71955 -11.56522 -11.40295 -11.33705 -11.26428 -11.15490 -11.13625 -10.35467 -9.84928 -9.56538 -8.73766 -6.45590 -0.47376 0.40629 0.84484 1.36742 1.45908 1.49561 2.15392 2.16953 2.55405 2.79208 3.45436 3.52930 3.79907 3.96867 3.99035 4.20905 4.30582 4.32941 4.44120 4.46227 4.49783 4.63276 4.65252 4.74140 4.84260 4.88058 4.90153 4.93793 4.99556 5.06269 5.09706 5.17697 5.19694 5.20681 5.27063 5.33035 5.38025 5.41058 5.45645 5.56443 5.60471 5.62916 5.88520 5.93541 6.09768 6.15052 6.52047 6.79155 6.84258 8.23873 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012552 B = 0.003133 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.251875 B = 8936.239578 C =10204.940611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.128 4.128 3 C -0.110 4.110 4 C -0.088 4.088 5 H 0.076 0.924 6 C -0.156 4.156 7 C -0.115 4.115 8 C 0.108 3.892 9 N -1.106 6.106 10 S 2.720 3.280 11 O -0.987 6.987 12 O -0.997 6.997 13 C -0.638 4.638 14 C -0.148 4.148 15 C -0.122 4.122 16 C -0.142 4.142 17 C 0.062 3.938 18 C -0.499 4.499 19 H 0.078 0.922 20 C 0.038 3.962 21 N -0.820 5.820 22 Si 0.982 3.018 23 H -0.262 1.262 24 H -0.264 1.264 25 H -0.260 1.260 26 C -0.146 4.146 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.048 0.952 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.079 0.921 41 H 0.426 0.574 42 H 0.132 0.868 43 H 0.127 0.873 44 H 0.113 0.887 45 H 0.292 0.708 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.181 -5.586 4.817 16.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.148 4.148 4 C -0.107 4.107 5 H 0.094 0.906 6 C -0.214 4.214 7 C -0.154 4.154 8 C -0.018 4.018 9 N -0.868 5.868 10 S 2.812 3.188 11 O -0.977 6.977 12 O -0.987 6.987 13 C -0.727 4.727 14 C -0.168 4.168 15 C -0.141 4.141 16 C -0.161 4.161 17 C 0.058 3.942 18 C -0.528 4.528 19 H 0.096 0.904 20 C -0.177 4.177 21 N -0.445 5.445 22 Si 0.803 3.197 23 H -0.186 1.186 24 H -0.188 1.188 25 H -0.184 1.184 26 C -0.167 4.167 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.097 0.903 41 H 0.262 0.738 42 H 0.150 0.850 43 H 0.145 0.855 44 H 0.131 0.869 45 H 0.103 0.897 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -14.828 -5.506 5.464 16.734 hybrid contribution 0.685 0.334 -1.535 1.714 sum -14.143 -5.172 3.929 15.563 Atomic orbital electron populations 1.21776 0.95633 1.01757 1.01833 1.21592 0.96018 0.96795 1.02116 1.21617 0.93727 0.97118 1.02298 1.21112 0.95996 0.95068 0.98571 0.90553 1.21996 1.00849 1.01250 0.97261 1.21819 0.92040 0.98007 1.03550 1.21587 0.97280 0.80718 1.02204 1.55197 1.30122 1.15103 1.86404 1.00739 0.72765 0.71947 0.73311 1.93490 1.86035 1.72003 1.46136 1.93498 1.86049 1.31544 1.87648 1.30257 1.20309 1.05072 1.17042 1.20462 1.02647 0.93307 1.00424 1.21143 0.98614 0.99523 0.94812 1.21645 1.01120 0.95399 0.97963 1.18049 0.90186 0.93383 0.92534 1.19827 1.40121 0.95060 0.97767 0.90391 1.26728 0.94607 0.96081 1.00322 1.69809 1.35049 1.14641 1.25039 0.85245 0.78871 0.78897 0.76727 1.18625 1.18847 1.18385 1.20857 1.00630 0.98693 0.96533 0.92564 0.92604 0.92832 0.91963 0.92009 0.91440 0.91952 0.92834 0.93336 0.91723 0.89958 0.90685 0.91899 0.90274 0.73755 0.85029 0.85514 0.86880 0.89706 0.87262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.91 71.98 0.71 -1.08 16 2 C -0.13 -1.68 5.69 30.59 0.17 -1.50 16 3 C -0.11 -1.52 4.68 30.59 0.14 -1.37 16 4 C -0.09 -1.44 2.39 -10.80 -0.03 -1.46 16 5 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 6 C -0.16 -2.87 8.70 71.98 0.63 -2.24 16 7 C -0.12 -2.06 4.82 30.60 0.15 -1.91 16 8 C 0.11 2.59 5.98 86.38 0.52 3.11 16 9 N -1.11 -30.16 6.00 -187.48 -1.12 -31.28 16 10 S 2.72 99.39 5.73 -56.49 -0.32 99.07 16 11 O -0.99 -38.56 16.75 -128.00 -2.14 -40.70 16 12 O -1.00 -41.53 17.27 -128.00 -2.21 -43.74 16 13 C -0.64 -27.70 5.94 22.22 0.13 -27.57 16 14 C -0.15 -6.22 9.53 22.46 0.21 -6.00 16 15 C -0.12 -5.38 10.02 22.22 0.22 -5.16 16 16 C -0.14 -7.18 8.70 22.73 0.20 -6.98 16 17 C 0.06 3.29 5.58 -21.29 -0.12 3.17 16 18 C -0.50 -26.48 9.05 23.46 0.21 -26.26 16 19 H 0.08 4.02 7.91 -2.91 -0.02 4.00 16 20 C 0.04 1.88 5.14 85.25 0.44 2.31 16 21 N -0.82 -40.93 10.95 21.83 0.24 -40.69 16 22 Si 0.98 37.10 29.60 68.60 2.03 39.14 16 23 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 24 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 25 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 26 C -0.15 -7.20 9.26 22.73 0.21 -6.99 16 27 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.85 6.57 -2.39 -0.02 0.83 16 31 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 34 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.05 1.02 6.56 -2.39 -0.02 1.01 16 36 H 0.06 1.05 6.57 -2.39 -0.02 1.04 16 37 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 38 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.06 1.64 6.56 -2.39 -0.02 1.63 16 40 H 0.08 1.88 7.75 -2.39 -0.02 1.87 16 41 H 0.43 9.50 8.65 -96.74 -0.84 8.66 16 42 H 0.13 4.80 7.61 -2.91 -0.02 4.78 16 43 H 0.13 4.74 8.06 -2.91 -0.02 4.71 16 44 H 0.11 5.89 6.15 -2.91 -0.02 5.87 16 45 H 0.29 13.11 8.30 -92.70 -0.77 12.34 16 46 H 0.11 5.25 7.60 -2.91 -0.02 5.23 16 Total: -1.00 -64.16 382.72 0.40 -63.76 By element: Atomic # 1 Polarization: 34.26 SS G_CDS: 0.13 Total: 34.39 kcal Atomic # 6 Polarization: -83.75 SS G_CDS: 3.80 Total: -79.95 kcal Atomic # 7 Polarization: -71.08 SS G_CDS: -0.89 Total: -71.97 kcal Atomic # 8 Polarization: -80.08 SS G_CDS: -4.35 Total: -84.44 kcal Atomic # 14 Polarization: 37.10 SS G_CDS: 2.03 Total: 39.14 kcal Atomic # 16 Polarization: 99.39 SS G_CDS: -0.32 Total: 99.07 kcal Total: -64.16 0.40 -63.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882575767.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.345 kcal (2) G-P(sol) polarization free energy of solvation -64.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds