Wall clock time and date at job start Tue Mar 31 2020 15:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47001 * 2 1 4 4 C 1.52994 * 109.47288 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47312 * 54.99581 * 4 3 2 6 6 C 1.53006 * 109.47263 * 294.99635 * 4 3 2 7 7 C 1.52999 * 109.47439 * 174.99907 * 4 3 2 8 8 C 1.52999 * 109.47576 * 185.00035 * 7 4 3 9 9 N 1.46496 * 109.47272 * 180.02562 * 8 7 4 10 10 S 1.65608 * 119.99913 * 165.00013 * 9 8 7 11 11 O 1.42100 * 106.40023 * 178.53537 * 10 9 8 12 12 O 1.42102 * 106.40088 * 311.45441 * 10 9 8 13 13 C 1.76195 * 107.21788 * 64.99528 * 10 9 8 14 14 C 1.38657 * 119.87937 * 269.72841 * 13 10 9 15 15 C 1.38618 * 120.50218 * 179.72395 * 14 13 10 16 16 C 1.37630 * 120.24578 * 0.55112 * 15 14 13 17 17 C 1.40696 * 119.75017 * 359.72288 * 16 15 14 18 18 C 1.41394 * 120.24901 * 180.02562 * 17 16 15 19 19 H 1.07996 * 119.99824 * 150.21858 * 18 17 16 20 20 C 1.39946 * 120.00158 * 330.22611 * 18 17 16 21 21 N 1.30828 * 120.00270 * 161.71834 * 20 18 17 22 22 Si 1.86805 * 119.99739 * 341.72322 * 20 18 17 23 23 H 1.48495 * 109.46974 * 95.41320 * 22 20 18 24 24 H 1.48504 * 109.46815 * 215.40929 * 22 20 18 25 25 H 1.48494 * 109.47144 * 335.41216 * 22 20 18 26 26 C 1.37604 * 119.87359 * 90.00174 * 13 10 9 27 27 H 1.09006 * 109.46845 * 60.00555 * 1 2 3 28 28 H 1.09000 * 109.47415 * 300.00344 * 1 2 3 29 29 H 1.09007 * 109.46998 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46845 * 119.99445 * 2 1 3 31 31 H 1.09000 * 109.47415 * 239.99656 * 2 1 3 32 32 H 1.09006 * 109.46868 * 299.99431 * 3 2 1 33 33 H 1.09000 * 109.47317 * 59.99596 * 3 2 1 34 34 H 1.08995 * 109.46577 * 59.99721 * 6 4 3 35 35 H 1.08990 * 109.47395 * 179.97438 * 6 4 3 36 36 H 1.08998 * 109.46912 * 300.00190 * 6 4 3 37 37 H 1.09008 * 109.47112 * 304.99648 * 7 4 3 38 38 H 1.09003 * 109.47274 * 64.99434 * 7 4 3 39 39 H 1.09008 * 109.46584 * 299.99937 * 8 7 4 40 40 H 1.09003 * 109.47310 * 59.99421 * 8 7 4 41 41 H 0.97000 * 120.00003 * 344.99496 * 9 8 7 42 42 H 1.08004 * 119.74632 * 359.97438 * 14 13 10 43 43 H 1.08001 * 119.87362 * 180.24891 * 15 14 13 44 44 H 1.08000 * 120.12655 * 179.74833 * 16 15 14 45 45 H 0.96997 * 119.99767 * 180.02562 * 21 20 18 46 46 H 1.08000 * 120.12759 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9336 0.8530 -0.8409 6 6 4.0794 0.8332 1.3084 7 6 4.0799 2.8796 -0.1251 8 6 5.6048 2.8705 -0.2499 9 7 6.0932 4.2465 -0.3696 10 16 7.7007 4.5768 -0.1478 11 8 7.8568 5.9729 -0.3621 12 8 8.0809 3.9283 1.0581 13 6 8.5822 3.7728 -1.4443 14 6 9.0404 2.4762 -1.2674 15 6 9.7303 1.8293 -2.2809 16 6 9.9777 2.4734 -3.4718 17 6 9.5224 3.7912 -3.6605 18 6 9.7702 4.4627 -4.8799 19 1 9.0777 5.2118 -5.2343 20 6 10.9129 4.1565 -5.6277 21 7 10.9760 4.4887 -6.8915 22 14 12.3479 3.2734 -4.8212 23 1 12.2355 1.8142 -5.0727 24 1 13.6230 3.7773 -5.3918 25 1 12.3260 3.5268 -3.3582 26 6 8.8181 4.4361 -2.6267 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.6766 1.9563 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 3.7160 -0.1905 1.3979 35 1 5.1693 0.8329 1.3087 36 1 3.7157 1.4228 2.1499 37 1 3.6457 3.3430 -1.0110 38 1 3.7911 3.4464 0.7600 39 1 6.0390 2.4070 0.6361 40 1 5.8936 2.3037 -1.1350 41 1 5.4750 4.9640 -0.5790 42 1 8.8550 1.9649 -0.3344 43 1 10.0792 0.8179 -2.1337 44 1 10.5189 1.9690 -4.2586 45 1 11.7679 4.2761 -7.4098 46 1 8.4637 5.4474 -2.7609 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882575768.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:57 Heat of formation + Delta-G solvation = -94.196620 kcal Electronic energy + Delta-G solvation = -25312.532367 eV Core-core repulsion = 21713.368742 eV Total energy + Delta-G solvation = -3599.163624 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -38.04181 -37.92318 -36.74797 -35.40397 -35.25229 -33.79848 -32.63370 -30.74462 -30.18223 -28.27393 -26.96054 -25.41017 -23.69891 -22.41098 -21.39761 -20.91571 -20.24149 -19.13841 -18.05270 -17.03348 -16.33590 -16.18973 -15.70398 -15.42018 -15.03652 -14.90124 -14.64017 -14.20796 -13.89467 -13.79962 -13.55190 -13.17731 -12.89658 -12.72896 -12.32642 -12.25251 -12.10633 -11.94318 -11.84847 -11.72024 -11.67212 -11.63361 -11.54898 -11.47478 -11.09030 -11.04230 -10.81116 -10.76226 -10.64157 -10.45002 -10.33132 -10.02745 -9.79491 -9.41423 -9.15946 -8.29758 -7.89956 -7.10471 -4.65960 0.91135 1.89318 2.39534 2.97909 3.10309 3.19520 3.44999 3.84074 4.09657 4.31027 4.42160 4.62104 4.66748 4.85771 4.89880 5.01348 5.07830 5.13845 5.21175 5.30529 5.44500 5.45457 5.53380 5.58560 5.65043 5.69713 5.75811 5.80091 5.91200 5.92262 5.94048 5.99104 6.02165 6.13708 6.18218 6.22472 6.27289 6.43863 6.56293 6.84600 7.03512 7.16249 7.17687 7.37009 7.59830 7.75598 8.16237 8.40547 8.59694 9.91377 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014997 B = 0.003013 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.634925 B = 9290.452567 C =10085.223373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.114 4.114 4 C -0.092 4.092 5 H 0.075 0.925 6 C -0.155 4.155 7 C -0.121 4.121 8 C 0.116 3.884 9 N -1.121 6.121 10 S 2.690 3.310 11 O -0.970 6.970 12 O -0.972 6.972 13 C -0.625 4.625 14 C -0.158 4.158 15 C -0.092 4.092 16 C -0.198 4.198 17 C 0.073 3.927 18 C -0.443 4.443 19 H 0.095 0.905 20 C 0.084 3.916 21 N -0.800 5.800 22 Si 0.906 3.094 23 H -0.268 1.268 24 H -0.286 1.286 25 H -0.243 1.243 26 C -0.102 4.102 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.054 0.946 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.414 0.586 42 H 0.111 0.889 43 H 0.103 0.897 44 H 0.106 0.894 45 H 0.288 0.712 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.569 -7.344 10.707 19.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.165 4.165 3 C -0.152 4.152 4 C -0.112 4.112 5 H 0.094 0.906 6 C -0.212 4.212 7 C -0.160 4.160 8 C -0.010 4.010 9 N -0.879 5.879 10 S 2.785 3.215 11 O -0.960 6.960 12 O -0.962 6.962 13 C -0.716 4.716 14 C -0.179 4.179 15 C -0.112 4.112 16 C -0.218 4.218 17 C 0.069 3.931 18 C -0.471 4.471 19 H 0.113 0.887 20 C -0.136 4.136 21 N -0.423 5.423 22 Si 0.732 3.268 23 H -0.194 1.194 24 H -0.213 1.213 25 H -0.166 1.166 26 C -0.123 4.123 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.247 0.753 42 H 0.129 0.871 43 H 0.121 0.879 44 H 0.124 0.876 45 H 0.098 0.902 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.995 -6.915 11.169 19.194 hybrid contribution 0.576 -0.533 -0.769 1.099 sum -13.419 -7.448 10.400 18.539 Atomic orbital electron populations 1.21784 0.96142 1.01431 1.01698 1.21594 0.95570 0.97125 1.02188 1.21656 0.94736 0.96747 1.02042 1.21134 0.95248 0.95830 0.98939 0.90648 1.21986 1.01604 1.00676 0.96932 1.21832 0.94278 0.97130 1.02761 1.21367 0.95421 0.81969 1.02291 1.55549 1.27325 1.15415 1.89652 1.01666 0.72232 0.73239 0.74362 1.93554 1.85092 1.30566 1.86807 1.93517 1.81805 1.77144 1.43764 1.29961 1.18515 1.07419 1.15731 1.20068 1.05185 0.93673 0.99010 1.20703 0.98376 0.98300 0.93771 1.21302 1.06954 0.95486 0.98007 1.17798 0.91571 0.91322 0.92438 1.19516 1.07090 1.19522 1.00990 0.88674 1.26163 1.00324 0.93237 0.93901 1.69678 1.29380 1.36310 1.06957 0.86374 0.78994 0.79252 0.82170 1.19417 1.21302 1.16630 1.20855 1.02273 0.98055 0.91119 0.92820 0.92890 0.92952 0.91770 0.92011 0.91938 0.92011 0.92501 0.92041 0.92643 0.91135 0.91193 0.90242 0.91370 0.75263 0.87059 0.87898 0.87614 0.90169 0.86253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.16 0.37 -0.61 16 2 C -0.13 -0.88 5.69 -26.73 -0.15 -1.03 16 3 C -0.11 -0.83 4.68 -26.74 -0.13 -0.96 16 4 C -0.09 -0.76 2.39 -90.62 -0.22 -0.97 16 5 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 6 C -0.15 -1.26 8.70 37.16 0.32 -0.94 16 7 C -0.12 -1.10 4.82 -26.73 -0.13 -1.22 16 8 C 0.12 1.35 5.98 -4.04 -0.02 1.33 16 9 N -1.12 -14.88 6.00 -10.61 -0.06 -14.94 16 10 S 2.69 47.71 5.74 -107.50 -0.62 47.09 16 11 O -0.97 -19.63 17.27 -57.17 -0.99 -20.62 16 12 O -0.97 -18.81 16.73 -57.17 -0.96 -19.77 16 13 C -0.63 -12.84 5.94 -39.66 -0.24 -13.07 16 14 C -0.16 -3.17 9.53 -39.29 -0.37 -3.55 16 15 C -0.09 -1.91 10.02 -39.66 -0.40 -2.30 16 16 C -0.20 -4.57 7.18 -38.88 -0.28 -4.85 16 17 C 0.07 1.79 5.11 -106.82 -0.55 1.25 16 18 C -0.44 -11.61 9.57 -37.74 -0.36 -11.97 16 19 H 0.10 2.58 8.06 -52.49 -0.42 2.16 16 20 C 0.08 2.13 5.40 -17.34 -0.09 2.04 16 21 N -0.80 -20.64 13.93 55.55 0.77 -19.86 16 22 Si 0.91 20.13 24.52 -169.99 -4.17 15.96 16 23 H -0.27 -5.69 6.71 56.52 0.38 -5.31 16 24 H -0.29 -6.13 7.11 56.52 0.40 -5.72 16 25 H -0.24 -5.60 6.86 56.52 0.39 -5.21 16 26 C -0.10 -2.33 9.26 -38.87 -0.36 -2.69 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.43 6.56 -51.93 -0.34 0.09 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.42 6.56 -51.93 -0.34 0.08 16 35 H 0.06 0.54 6.57 -51.93 -0.34 0.20 16 36 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.94 6.17 -51.92 -0.32 0.62 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.41 4.54 8.65 -34.48 -0.30 4.25 16 42 H 0.11 1.98 7.59 -52.48 -0.40 1.58 16 43 H 0.10 1.80 8.06 -52.49 -0.42 1.37 16 44 H 0.11 2.40 4.73 -52.49 -0.25 2.15 16 45 H 0.29 6.70 8.30 -40.82 -0.34 6.36 16 46 H 0.12 2.63 7.60 -52.49 -0.40 2.23 16 LS Contribution 377.47 15.07 5.69 5.69 Total: -1.00 -30.13 377.47 -10.29 -40.42 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -7.35 Total: 5.60 kcal Atomic # 6 Polarization: -36.96 SS G_CDS: -2.60 Total: -39.57 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: 0.71 Total: -34.80 kcal Atomic # 8 Polarization: -38.44 SS G_CDS: -1.94 Total: -40.39 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.17 Total: 15.96 kcal Atomic # 16 Polarization: 47.71 SS G_CDS: -0.62 Total: 47.09 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.13 -10.29 -40.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882575768.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.780 kcal (2) G-P(sol) polarization free energy of solvation -30.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds