Wall clock time and date at job start Tue Mar 31 2020 15:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47001 * 2 1 4 4 C 1.52994 * 109.47288 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47312 * 54.99581 * 4 3 2 6 6 C 1.53006 * 109.47263 * 294.99635 * 4 3 2 7 7 C 1.52999 * 109.47439 * 174.99907 * 4 3 2 8 8 C 1.52999 * 109.47576 * 185.00035 * 7 4 3 9 9 N 1.46496 * 109.47272 * 180.02562 * 8 7 4 10 10 S 1.65608 * 119.99913 * 165.00013 * 9 8 7 11 11 O 1.42100 * 106.40023 * 178.53537 * 10 9 8 12 12 O 1.42102 * 106.40088 * 311.45441 * 10 9 8 13 13 C 1.76195 * 107.21788 * 64.99528 * 10 9 8 14 14 C 1.38657 * 119.87937 * 269.72841 * 13 10 9 15 15 C 1.38618 * 120.50218 * 179.72395 * 14 13 10 16 16 C 1.37630 * 120.24578 * 0.55112 * 15 14 13 17 17 C 1.40696 * 119.75017 * 359.72288 * 16 15 14 18 18 C 1.41394 * 120.24901 * 180.02562 * 17 16 15 19 19 H 1.07996 * 119.99824 * 150.21858 * 18 17 16 20 20 C 1.39946 * 120.00158 * 330.22611 * 18 17 16 21 21 N 1.30828 * 120.00270 * 161.71834 * 20 18 17 22 22 Si 1.86805 * 119.99739 * 341.72322 * 20 18 17 23 23 H 1.48495 * 109.46974 * 95.41320 * 22 20 18 24 24 H 1.48504 * 109.46815 * 215.40929 * 22 20 18 25 25 H 1.48494 * 109.47144 * 335.41216 * 22 20 18 26 26 C 1.37604 * 119.87359 * 90.00174 * 13 10 9 27 27 H 1.09006 * 109.46845 * 60.00555 * 1 2 3 28 28 H 1.09000 * 109.47415 * 300.00344 * 1 2 3 29 29 H 1.09007 * 109.46998 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46845 * 119.99445 * 2 1 3 31 31 H 1.09000 * 109.47415 * 239.99656 * 2 1 3 32 32 H 1.09006 * 109.46868 * 299.99431 * 3 2 1 33 33 H 1.09000 * 109.47317 * 59.99596 * 3 2 1 34 34 H 1.08995 * 109.46577 * 59.99721 * 6 4 3 35 35 H 1.08990 * 109.47395 * 179.97438 * 6 4 3 36 36 H 1.08998 * 109.46912 * 300.00190 * 6 4 3 37 37 H 1.09008 * 109.47112 * 304.99648 * 7 4 3 38 38 H 1.09003 * 109.47274 * 64.99434 * 7 4 3 39 39 H 1.09008 * 109.46584 * 299.99937 * 8 7 4 40 40 H 1.09003 * 109.47310 * 59.99421 * 8 7 4 41 41 H 0.97000 * 120.00003 * 344.99496 * 9 8 7 42 42 H 1.08004 * 119.74632 * 359.97438 * 14 13 10 43 43 H 1.08001 * 119.87362 * 180.24891 * 15 14 13 44 44 H 1.08000 * 120.12655 * 179.74833 * 16 15 14 45 45 H 0.96997 * 119.99767 * 180.02562 * 21 20 18 46 46 H 1.08000 * 120.12759 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9336 0.8530 -0.8409 6 6 4.0794 0.8332 1.3084 7 6 4.0799 2.8796 -0.1251 8 6 5.6048 2.8705 -0.2499 9 7 6.0932 4.2465 -0.3696 10 16 7.7007 4.5768 -0.1478 11 8 7.8568 5.9729 -0.3621 12 8 8.0809 3.9283 1.0581 13 6 8.5822 3.7728 -1.4443 14 6 9.0404 2.4762 -1.2674 15 6 9.7303 1.8293 -2.2809 16 6 9.9777 2.4734 -3.4718 17 6 9.5224 3.7912 -3.6605 18 6 9.7702 4.4627 -4.8799 19 1 9.0777 5.2118 -5.2343 20 6 10.9129 4.1565 -5.6277 21 7 10.9760 4.4887 -6.8915 22 14 12.3479 3.2734 -4.8212 23 1 12.2355 1.8142 -5.0727 24 1 13.6230 3.7773 -5.3918 25 1 12.3260 3.5268 -3.3582 26 6 8.8181 4.4361 -2.6267 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.6766 1.9563 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 3.7160 -0.1905 1.3979 35 1 5.1693 0.8329 1.3087 36 1 3.7157 1.4228 2.1499 37 1 3.6457 3.3430 -1.0110 38 1 3.7911 3.4464 0.7600 39 1 6.0390 2.4070 0.6361 40 1 5.8936 2.3037 -1.1350 41 1 5.4750 4.9640 -0.5790 42 1 8.8550 1.9649 -0.3344 43 1 10.0792 0.8179 -2.1337 44 1 10.5189 1.9690 -4.2586 45 1 11.7679 4.2761 -7.4098 46 1 8.4637 5.4474 -2.7609 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882575768.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:57 Heat of formation + Delta-G solvation = -113.118272 kcal Electronic energy + Delta-G solvation = -25313.352871 eV Core-core repulsion = 21713.368742 eV Total energy + Delta-G solvation = -3599.984129 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.69456 -38.76401 -38.24581 -36.93383 -36.16086 -35.64559 -33.33910 -32.54907 -31.89635 -29.08490 -27.54564 -27.25422 -24.49602 -24.10222 -22.69759 -22.02963 -21.01749 -20.50841 -19.66931 -18.43115 -18.06754 -17.37417 -17.05329 -16.64864 -16.37392 -16.04779 -15.83655 -15.48522 -14.89072 -14.86669 -14.69608 -14.59823 -14.24384 -14.04460 -13.59217 -13.48985 -13.38589 -13.20396 -13.13846 -13.08770 -12.90385 -12.76798 -12.68351 -12.55553 -12.47531 -12.19123 -12.05097 -11.80519 -11.70107 -11.55898 -11.38800 -11.23093 -11.11189 -11.06001 -10.40107 -10.01034 -9.69827 -8.98072 -6.60698 -0.53752 0.17335 0.63879 1.19784 1.34987 1.42119 2.02551 2.09774 2.41002 2.75018 3.28860 3.42002 3.79610 3.96045 4.00821 4.17132 4.27107 4.29967 4.32684 4.42927 4.45094 4.50142 4.63675 4.66645 4.74550 4.75407 4.84038 4.88700 4.96509 5.00788 5.05878 5.10329 5.18234 5.21744 5.27771 5.32743 5.34890 5.38402 5.42648 5.46090 5.61377 5.61906 5.64328 5.75113 5.98056 6.12954 6.23131 6.56988 6.68416 8.10149 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014997 B = 0.003013 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.634925 B = 9290.452567 C =10085.223373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.111 4.111 4 C -0.090 4.090 5 H 0.071 0.929 6 C -0.156 4.156 7 C -0.116 4.116 8 C 0.106 3.894 9 N -1.105 6.105 10 S 2.718 3.282 11 O -0.996 6.996 12 O -0.981 6.981 13 C -0.633 4.633 14 C -0.142 4.142 15 C -0.095 4.095 16 C -0.205 4.205 17 C 0.053 3.947 18 C -0.484 4.484 19 H 0.061 0.939 20 C 0.049 3.951 21 N -0.841 5.841 22 Si 0.956 3.044 23 H -0.247 1.247 24 H -0.274 1.274 25 H -0.256 1.256 26 C -0.123 4.123 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.426 0.574 42 H 0.144 0.856 43 H 0.144 0.856 44 H 0.109 0.891 45 H 0.296 0.704 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.230 -9.503 13.047 22.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.165 4.165 3 C -0.149 4.149 4 C -0.109 4.109 5 H 0.090 0.910 6 C -0.213 4.213 7 C -0.155 4.155 8 C -0.019 4.019 9 N -0.868 5.868 10 S 2.809 3.191 11 O -0.987 6.987 12 O -0.971 6.971 13 C -0.721 4.721 14 C -0.162 4.162 15 C -0.114 4.114 16 C -0.224 4.224 17 C 0.050 3.950 18 C -0.513 4.513 19 H 0.080 0.920 20 C -0.167 4.167 21 N -0.467 5.467 22 Si 0.779 3.221 23 H -0.172 1.172 24 H -0.200 1.200 25 H -0.180 1.180 26 C -0.144 4.144 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.263 0.737 42 H 0.161 0.839 43 H 0.162 0.838 44 H 0.127 0.873 45 H 0.107 0.893 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -14.650 -9.085 13.481 21.884 hybrid contribution 0.589 0.074 -1.280 1.411 sum -14.061 -9.010 12.201 20.683 Atomic orbital electron populations 1.21785 0.95763 1.01734 1.01795 1.21591 0.95923 0.96838 1.02123 1.21622 0.93987 0.97046 1.02207 1.21116 0.95834 0.95083 0.98906 0.91009 1.21999 1.01134 1.01244 0.96930 1.21821 0.92202 0.97996 1.03507 1.21629 0.97309 0.80591 1.02397 1.55208 1.25535 1.16877 1.89174 1.00866 0.72848 0.72066 0.73277 1.93518 1.86003 1.32230 1.86901 1.93504 1.82746 1.77238 1.43632 1.30462 1.18317 1.07833 1.15531 1.20624 1.02522 0.93197 0.99867 1.21173 0.97548 1.00060 0.92613 1.21503 1.06755 0.94907 0.99275 1.17958 0.92473 0.92277 0.92298 1.19482 1.08135 1.20701 1.02959 0.92039 1.26801 1.01848 0.93879 0.94160 1.69701 1.30585 1.38439 1.07927 0.85626 0.76711 0.79513 0.80283 1.17184 1.20021 1.18033 1.20891 1.03148 0.98332 0.92001 0.92925 0.92603 0.92593 0.91540 0.92377 0.91997 0.91627 0.91788 0.92734 0.92335 0.90544 0.90334 0.89910 0.91539 0.73693 0.83854 0.83800 0.87325 0.89308 0.86846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.91 71.98 0.71 -0.97 16 2 C -0.13 -1.51 5.69 30.59 0.17 -1.34 16 3 C -0.11 -1.37 4.68 30.59 0.14 -1.23 16 4 C -0.09 -1.26 2.39 -10.79 -0.03 -1.29 16 5 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 6 C -0.16 -2.15 8.70 71.98 0.63 -1.53 16 7 C -0.12 -1.80 4.82 30.59 0.15 -1.65 16 8 C 0.11 2.20 5.98 86.38 0.52 2.72 16 9 N -1.11 -26.92 6.00 -187.49 -1.12 -28.05 16 10 S 2.72 91.54 5.74 -56.49 -0.32 91.21 16 11 O -1.00 -39.61 17.27 -128.00 -2.21 -41.82 16 12 O -0.98 -35.24 16.73 -128.00 -2.14 -37.38 16 13 C -0.63 -25.05 5.94 22.22 0.13 -24.92 16 14 C -0.14 -5.21 9.53 22.46 0.21 -5.00 16 15 C -0.10 -3.61 10.02 22.22 0.22 -3.39 16 16 C -0.20 -9.22 7.18 22.73 0.16 -9.05 16 17 C 0.05 2.68 5.11 -21.29 -0.11 2.57 16 18 C -0.48 -26.74 9.57 23.46 0.22 -26.51 16 19 H 0.06 3.65 8.06 -2.91 -0.02 3.62 16 20 C 0.05 2.56 5.40 85.26 0.46 3.02 16 21 N -0.84 -45.12 13.93 21.83 0.30 -44.82 16 22 Si 0.96 41.34 24.52 68.60 1.68 43.02 16 23 H -0.25 -9.75 6.71 99.48 0.67 -9.08 16 24 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 25 H -0.26 -11.50 6.86 99.48 0.68 -10.82 16 26 C -0.12 -5.70 9.26 22.73 0.21 -5.49 16 27 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 28 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.07 0.76 6.56 -2.38 -0.02 0.74 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 33 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.06 0.78 6.56 -2.39 -0.02 0.77 16 35 H 0.05 0.82 6.57 -2.39 -0.02 0.81 16 36 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 38 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.08 1.70 6.17 -2.38 -0.01 1.69 16 40 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.43 8.48 8.65 -96.74 -0.84 7.64 16 42 H 0.14 4.39 7.59 -2.91 -0.02 4.37 16 43 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 44 H 0.11 4.77 4.73 -2.91 -0.01 4.76 16 45 H 0.30 14.20 8.30 -92.71 -0.77 13.43 16 46 H 0.11 5.24 7.60 -2.91 -0.02 5.21 16 Total: -1.00 -65.75 377.47 0.07 -65.68 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: 0.07 Total: 26.21 kcal Atomic # 6 Polarization: -77.87 SS G_CDS: 3.81 Total: -74.05 kcal Atomic # 7 Polarization: -72.04 SS G_CDS: -0.82 Total: -72.87 kcal Atomic # 8 Polarization: -74.85 SS G_CDS: -4.35 Total: -79.20 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 1.68 Total: 43.02 kcal Atomic # 16 Polarization: 91.54 SS G_CDS: -0.32 Total: 91.21 kcal Total: -65.75 0.07 -65.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882575768.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.442 kcal (2) G-P(sol) polarization free energy of solvation -65.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds