Wall clock time and date at job start Tue Mar 31 2020 14:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47384 * 2 1 4 4 C 1.52999 * 109.46776 * 180.02562 * 3 2 1 5 5 C 1.50707 * 109.46871 * 180.02562 * 4 3 2 6 6 N 1.29025 * 124.91881 * 89.97284 * 5 4 3 7 7 C 1.31783 * 117.12171 * 180.02562 * 6 5 4 8 8 C 1.50707 * 122.74328 * 180.02562 * 7 6 5 9 9 C 1.33630 * 114.50354 * 359.97438 * 7 6 5 10 10 C 1.50697 * 126.03963 * 180.02562 * 9 7 6 11 11 C 1.50700 * 109.47266 * 89.99962 * 10 9 7 12 12 O 1.20822 * 119.99958 * 0.02562 * 11 10 9 13 13 O 1.34234 * 120.00068 * 180.02562 * 11 10 9 14 14 C 1.45196 * 116.99938 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47070 * 179.97438 * 14 13 11 16 16 C 1.52998 * 109.47242 * 180.02562 * 15 14 13 17 17 C 1.50704 * 109.47188 * 180.02562 * 16 15 14 18 18 H 1.07996 * 120.00305 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99992 * 179.97438 * 17 16 15 20 20 N 1.31521 * 119.99984 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00093 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47148 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47459 * 120.00220 * 21 19 17 24 24 H 1.48504 * 109.47236 * 240.00174 * 21 19 17 25 25 S 1.70976 * 124.91401 * 270.28897 * 5 4 3 26 26 H 1.09000 * 109.46955 * 60.00026 * 1 2 3 27 27 H 1.08997 * 109.47309 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46813 * 300.00488 * 1 2 3 29 29 H 1.08999 * 109.47300 * 239.99885 * 2 1 3 30 30 H 1.09005 * 109.47328 * 120.00193 * 2 1 3 31 31 H 1.08995 * 109.46980 * 60.00193 * 3 2 1 32 32 H 1.09000 * 109.47053 * 299.99913 * 3 2 1 33 33 H 1.08995 * 109.47383 * 60.00226 * 4 3 2 34 34 H 1.09000 * 109.47085 * 299.99680 * 4 3 2 35 35 H 1.09006 * 109.46446 * 269.98874 * 8 7 6 36 36 H 1.08994 * 109.47504 * 29.99423 * 8 7 6 37 37 H 1.09003 * 109.46619 * 150.00077 * 8 7 6 38 38 H 1.09004 * 109.47205 * 330.00055 * 10 9 7 39 39 H 1.08997 * 109.47395 * 210.00548 * 10 9 7 40 40 H 1.08996 * 109.47465 * 299.99911 * 14 13 11 41 41 H 1.08999 * 109.47008 * 59.99921 * 14 13 11 42 42 H 1.08998 * 109.47592 * 300.00297 * 15 14 13 43 43 H 1.08999 * 109.47084 * 60.00195 * 15 14 13 44 44 H 1.09004 * 109.47100 * 299.99832 * 16 15 14 45 45 H 1.08999 * 109.47046 * 60.00020 * 16 15 14 46 46 H 0.96998 * 119.99842 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4423 -0.0006 5 6 4.0725 2.8632 0.0000 6 7 4.3187 3.5590 1.0583 7 6 4.7535 4.7902 0.8800 8 6 5.0805 5.7131 2.0257 9 6 4.8817 5.1529 -0.3997 10 6 5.3558 6.4938 -0.8980 11 6 6.8534 6.4671 -1.0642 12 8 7.4721 5.4622 -0.8051 13 8 7.4999 7.5597 -1.5001 14 6 8.9422 7.4620 -1.6358 15 6 9.4983 8.7947 -2.1411 16 6 11.0181 8.6916 -2.2847 17 6 11.5659 10.0045 -2.7819 18 1 10.8971 10.8298 -2.9764 19 6 12.9212 10.1521 -2.9884 20 7 13.7357 9.1469 -2.7520 21 14 13.6002 11.7792 -3.6053 22 1 12.4849 12.7413 -3.7941 23 1 14.5609 12.3231 -2.6122 24 1 14.2945 11.5667 -4.9007 25 16 4.3915 3.7890 -1.4016 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5140 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9330 0.9287 -0.8908 34 1 3.9337 0.9284 0.8891 35 1 4.1903 6.2780 2.3026 36 1 5.4188 5.1264 2.8797 37 1 5.8688 6.4025 1.7232 38 1 5.0838 7.2658 -0.1782 39 1 4.8875 6.7110 -1.8580 40 1 9.3833 7.2278 -0.6670 41 1 9.1876 6.6732 -2.3470 42 1 9.0573 9.0286 -3.1100 43 1 9.2529 9.5838 -1.4303 44 1 11.4595 8.4576 -1.3159 45 1 11.2631 7.9026 -2.9958 46 1 14.6890 9.2506 -2.8977 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884805659.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:58 Heat of formation + Delta-G solvation = -88.227908 kcal Electronic energy + Delta-G solvation = -23822.955692 eV Core-core repulsion = 20224.050891 eV Total energy + Delta-G solvation = -3598.904801 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.59200 -39.88347 -36.70446 -36.29784 -34.02743 -33.73158 -31.81495 -31.26233 -29.91158 -27.34818 -26.27286 -25.38315 -23.29946 -22.46184 -21.49953 -21.09615 -20.36368 -19.00781 -18.22163 -17.58517 -16.57748 -16.42326 -15.98273 -15.83430 -15.28242 -15.12944 -14.48641 -14.32986 -14.17043 -13.92465 -13.84336 -13.15542 -13.13212 -13.05802 -12.93190 -12.46072 -12.42937 -12.21385 -12.01490 -11.86881 -11.70608 -11.64214 -11.42899 -11.33550 -11.02525 -11.00057 -10.67477 -10.66101 -10.42420 -10.42046 -9.83082 -9.74968 -9.57646 -9.42238 -9.16641 -8.80303 -8.40587 -6.05075 -4.08206 0.41306 1.09449 1.51054 2.27368 2.47014 2.96874 3.28993 3.36534 3.40760 3.72526 4.33024 4.40010 4.42286 4.49871 4.54656 4.68570 4.83514 4.89109 4.94762 5.13149 5.16564 5.17475 5.21004 5.31021 5.35928 5.37276 5.40609 5.52276 5.54549 5.56229 5.60171 5.67781 5.69778 5.81343 5.88440 5.98401 6.06396 6.46093 6.51339 6.81287 6.95949 7.53067 7.58601 7.69113 7.87565 7.93292 8.34123 8.98302 9.56288 11.06381 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.036345 B = 0.001718 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.214039 B =16296.166081 C =16499.514725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.113 4.113 4 C -0.044 4.044 5 C 0.053 3.947 6 N -0.469 5.469 7 C 0.085 3.915 8 C -0.081 4.081 9 C -0.220 4.220 10 C -0.035 4.035 11 C 0.455 3.545 12 O -0.501 6.501 13 O -0.357 6.357 14 C 0.069 3.931 15 C -0.109 4.109 16 C 0.023 3.977 17 C -0.521 4.521 18 H 0.058 0.942 19 C 0.057 3.943 20 N -0.894 5.894 21 Si 0.895 3.105 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.284 1.284 25 S 0.134 5.866 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.126 0.874 39 H 0.117 0.883 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.019 0.981 45 H 0.019 0.981 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.521 -15.020 5.937 31.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.152 4.152 4 C -0.085 4.085 5 C -0.224 4.224 6 N -0.183 5.183 7 C -0.047 4.047 8 C -0.141 4.141 9 C -0.341 4.341 10 C -0.075 4.075 11 C 0.296 3.704 12 O -0.388 6.388 13 O -0.273 6.273 14 C -0.004 4.004 15 C -0.146 4.146 16 C -0.014 4.014 17 C -0.560 4.560 18 H 0.077 0.923 19 C -0.145 4.145 20 N -0.533 5.533 21 Si 0.723 3.277 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.210 1.210 25 S 0.392 5.608 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.104 0.896 34 H 0.113 0.887 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.143 0.857 39 H 0.135 0.865 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.038 0.962 45 H 0.038 0.962 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -27.264 -15.813 5.414 31.980 hybrid contribution 0.960 1.269 0.328 1.625 sum -26.304 -14.543 5.742 30.600 Atomic orbital electron populations 1.21768 0.95629 1.01712 1.01943 1.21523 0.96105 0.96166 1.02364 1.21629 0.93083 0.97577 1.02948 1.20324 0.96209 0.87506 1.04457 1.26921 1.02836 1.01591 0.91097 1.66129 1.15080 1.05506 1.31614 1.20121 0.99347 0.91376 0.93857 1.20402 1.01902 0.96931 0.94843 1.24935 1.12824 1.00371 0.95988 1.19597 0.89333 0.93461 1.05092 1.23345 0.90929 0.81783 0.74316 1.90688 1.68970 1.33255 1.45892 1.86487 1.25378 1.38746 1.76737 1.23524 0.73682 1.01455 1.01753 1.21769 0.99449 0.92855 1.00567 1.19064 0.86984 0.97780 0.97575 1.21209 0.92320 0.97989 1.44452 0.92348 1.25034 0.97145 0.96753 0.95537 1.69978 1.03571 1.30855 1.48916 0.86489 0.79013 0.83759 0.78473 1.19654 1.20964 1.20974 1.83880 1.59679 1.05256 1.11999 0.92690 0.92646 0.92673 0.91749 0.91670 0.91176 0.91636 0.89562 0.88679 0.90370 0.90282 0.90798 0.85651 0.86496 0.91475 0.91520 0.92118 0.92091 0.96221 0.96231 0.92940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.91 37.16 0.37 -0.35 16 2 C -0.12 -0.61 5.93 -26.73 -0.16 -0.77 16 3 C -0.11 -0.70 5.20 -26.73 -0.14 -0.84 16 4 C -0.04 -0.33 5.80 -27.88 -0.16 -0.49 16 5 C 0.05 0.56 6.64 -13.45 -0.09 0.47 16 6 N -0.47 -5.85 10.53 -8.05 -0.08 -5.94 16 7 C 0.09 1.03 6.74 -84.22 -0.57 0.46 16 8 C -0.08 -0.80 9.82 36.01 0.35 -0.44 16 9 C -0.22 -2.55 5.08 -35.92 -0.18 -2.73 16 10 C -0.03 -0.36 5.74 -29.04 -0.17 -0.53 16 11 C 0.45 6.72 7.95 36.01 0.29 7.01 16 12 O -0.50 -9.02 15.78 -18.75 -0.30 -9.31 16 13 O -0.36 -5.78 10.22 -39.27 -0.40 -6.18 16 14 C 0.07 1.26 5.47 37.16 0.20 1.47 16 15 C -0.11 -2.24 5.53 -26.73 -0.15 -2.39 16 16 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 17 C -0.52 -14.66 9.11 -34.44 -0.31 -14.98 16 18 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -26.80 13.29 55.43 0.74 -26.07 16 21 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 25 S 0.13 1.39 23.18 -107.50 -2.49 -1.10 16 26 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.05 0.27 8.14 -51.92 -0.42 -0.16 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.72 7.35 -51.93 -0.38 0.33 16 38 H 0.13 0.97 7.43 -51.93 -0.39 0.59 16 39 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.07 1.25 8.13 -51.93 -0.42 0.82 16 41 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 42 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 400.58 15.07 6.04 6.04 Total: -1.00 -33.20 400.58 -10.39 -43.59 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: -7.92 Total: -5.39 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: -0.95 Total: -12.12 kcal Atomic # 7 Polarization: -32.66 SS G_CDS: 0.65 Total: -32.00 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -0.70 Total: -15.49 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -2.49 Total: -1.10 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.20 -10.39 -43.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884805659.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.639 kcal (2) G-P(sol) polarization free energy of solvation -33.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds