Wall clock time and date at job start Tue Mar 31 2020 14:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47384 * 2 1 4 4 C 1.52999 * 109.46776 * 180.02562 * 3 2 1 5 5 C 1.50707 * 109.46871 * 180.02562 * 4 3 2 6 6 N 1.29025 * 124.91881 * 89.97284 * 5 4 3 7 7 C 1.31783 * 117.12171 * 180.02562 * 6 5 4 8 8 C 1.50707 * 122.74328 * 180.02562 * 7 6 5 9 9 C 1.33630 * 114.50354 * 359.97438 * 7 6 5 10 10 C 1.50697 * 126.03963 * 180.02562 * 9 7 6 11 11 C 1.50700 * 109.47266 * 89.99962 * 10 9 7 12 12 O 1.20822 * 119.99958 * 0.02562 * 11 10 9 13 13 O 1.34234 * 120.00068 * 180.02562 * 11 10 9 14 14 C 1.45196 * 116.99938 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47070 * 179.97438 * 14 13 11 16 16 C 1.52998 * 109.47242 * 180.02562 * 15 14 13 17 17 C 1.50704 * 109.47188 * 180.02562 * 16 15 14 18 18 H 1.07996 * 120.00305 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99992 * 179.97438 * 17 16 15 20 20 N 1.31521 * 119.99984 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00093 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47148 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47459 * 120.00220 * 21 19 17 24 24 H 1.48504 * 109.47236 * 240.00174 * 21 19 17 25 25 S 1.70976 * 124.91401 * 270.28897 * 5 4 3 26 26 H 1.09000 * 109.46955 * 60.00026 * 1 2 3 27 27 H 1.08997 * 109.47309 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46813 * 300.00488 * 1 2 3 29 29 H 1.08999 * 109.47300 * 239.99885 * 2 1 3 30 30 H 1.09005 * 109.47328 * 120.00193 * 2 1 3 31 31 H 1.08995 * 109.46980 * 60.00193 * 3 2 1 32 32 H 1.09000 * 109.47053 * 299.99913 * 3 2 1 33 33 H 1.08995 * 109.47383 * 60.00226 * 4 3 2 34 34 H 1.09000 * 109.47085 * 299.99680 * 4 3 2 35 35 H 1.09006 * 109.46446 * 269.98874 * 8 7 6 36 36 H 1.08994 * 109.47504 * 29.99423 * 8 7 6 37 37 H 1.09003 * 109.46619 * 150.00077 * 8 7 6 38 38 H 1.09004 * 109.47205 * 330.00055 * 10 9 7 39 39 H 1.08997 * 109.47395 * 210.00548 * 10 9 7 40 40 H 1.08996 * 109.47465 * 299.99911 * 14 13 11 41 41 H 1.08999 * 109.47008 * 59.99921 * 14 13 11 42 42 H 1.08998 * 109.47592 * 300.00297 * 15 14 13 43 43 H 1.08999 * 109.47084 * 60.00195 * 15 14 13 44 44 H 1.09004 * 109.47100 * 299.99832 * 16 15 14 45 45 H 1.08999 * 109.47046 * 60.00020 * 16 15 14 46 46 H 0.96998 * 119.99842 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4423 -0.0006 5 6 4.0725 2.8632 0.0000 6 7 4.3187 3.5590 1.0583 7 6 4.7535 4.7902 0.8800 8 6 5.0805 5.7131 2.0257 9 6 4.8817 5.1529 -0.3997 10 6 5.3558 6.4938 -0.8980 11 6 6.8534 6.4671 -1.0642 12 8 7.4721 5.4622 -0.8051 13 8 7.4999 7.5597 -1.5001 14 6 8.9422 7.4620 -1.6358 15 6 9.4983 8.7947 -2.1411 16 6 11.0181 8.6916 -2.2847 17 6 11.5659 10.0045 -2.7819 18 1 10.8971 10.8298 -2.9764 19 6 12.9212 10.1521 -2.9884 20 7 13.7357 9.1469 -2.7520 21 14 13.6002 11.7792 -3.6053 22 1 12.4849 12.7413 -3.7941 23 1 14.5609 12.3231 -2.6122 24 1 14.2945 11.5667 -4.9007 25 16 4.3915 3.7890 -1.4016 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5140 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9330 0.9287 -0.8908 34 1 3.9337 0.9284 0.8891 35 1 4.1903 6.2780 2.3026 36 1 5.4188 5.1264 2.8797 37 1 5.8688 6.4025 1.7232 38 1 5.0838 7.2658 -0.1782 39 1 4.8875 6.7110 -1.8580 40 1 9.3833 7.2278 -0.6670 41 1 9.1876 6.6732 -2.3470 42 1 9.0573 9.0286 -3.1100 43 1 9.2529 9.5838 -1.4303 44 1 11.4595 8.4576 -1.3159 45 1 11.2631 7.9026 -2.9958 46 1 14.6890 9.2506 -2.8977 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884805659.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:57 Heat of formation + Delta-G solvation = -105.146509 kcal Electronic energy + Delta-G solvation = -23823.689338 eV Core-core repulsion = 20224.050891 eV Total energy + Delta-G solvation = -3599.638447 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.70233 -40.86673 -37.95398 -36.93958 -35.94292 -34.54347 -33.68031 -32.04364 -30.62747 -29.08429 -27.22402 -26.15454 -25.07678 -23.12032 -22.30648 -22.17007 -21.96269 -19.88099 -19.04323 -18.88390 -18.46595 -17.71253 -17.31294 -16.50429 -16.34332 -16.13552 -15.94248 -15.72203 -14.82068 -14.65884 -14.61274 -14.48396 -14.15527 -14.05811 -13.81931 -13.68850 -13.58582 -13.53982 -13.08424 -13.03579 -12.84824 -12.50893 -12.37448 -12.20557 -12.16273 -12.12192 -12.09415 -11.87746 -11.83601 -11.46270 -11.45676 -11.42636 -11.22999 -10.65675 -10.58565 -10.29518 -9.61451 -8.22389 -6.33998 -0.42313 0.30418 0.68935 1.10564 1.41544 1.41676 1.50583 1.55879 1.87914 2.41301 3.01029 3.11784 3.45253 3.77596 3.82086 3.92599 3.99183 4.02042 4.02640 4.04918 4.32156 4.39402 4.41016 4.42899 4.43136 4.64797 4.68925 4.73102 4.76385 4.79048 4.85447 4.87977 4.97134 5.00757 5.07312 5.09772 5.26803 5.28772 5.37819 5.40758 5.47817 5.51384 5.62792 5.79595 6.18332 6.64843 6.71026 6.82401 7.35842 8.90015 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.036345 B = 0.001718 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.214039 B =16296.166081 C =16499.514725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.106 4.106 4 C -0.045 4.045 5 C 0.052 3.948 6 N -0.497 5.497 7 C 0.071 3.929 8 C -0.081 4.081 9 C -0.239 4.239 10 C -0.026 4.026 11 C 0.456 3.544 12 O -0.537 6.537 13 O -0.353 6.353 14 C 0.079 3.921 15 C -0.093 4.093 16 C 0.024 3.976 17 C -0.542 4.542 18 H 0.066 0.934 19 C -0.001 4.001 20 N -0.934 5.934 21 Si 0.969 3.031 22 H -0.259 1.259 23 H -0.279 1.279 24 H -0.279 1.279 25 S 0.144 5.856 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.156 0.844 39 H 0.145 0.855 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.069 0.931 44 H -0.004 1.004 45 H -0.004 1.004 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.200 -14.137 5.408 32.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.145 4.145 4 C -0.086 4.086 5 C -0.226 4.226 6 N -0.213 5.213 7 C -0.061 4.061 8 C -0.140 4.140 9 C -0.360 4.360 10 C -0.065 4.065 11 C 0.299 3.701 12 O -0.426 6.426 13 O -0.269 6.269 14 C 0.005 3.995 15 C -0.131 4.131 16 C -0.013 4.013 17 C -0.580 4.580 18 H 0.085 0.915 19 C -0.199 4.199 20 N -0.574 5.574 21 Si 0.793 3.207 22 H -0.182 1.182 23 H -0.204 1.204 24 H -0.205 1.205 25 S 0.402 5.598 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.120 0.880 34 H 0.113 0.887 35 H 0.119 0.881 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.173 0.827 39 H 0.163 0.837 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.014 0.986 45 H 0.014 0.986 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -28.975 -14.926 4.884 32.957 hybrid contribution 1.437 0.891 0.521 1.769 sum -27.538 -14.035 5.405 31.377 Atomic orbital electron populations 1.21774 0.95398 1.02102 1.01848 1.21510 0.96269 0.95271 1.02849 1.21563 0.92060 0.98385 1.02481 1.20486 0.96990 0.85894 1.05203 1.27475 1.01684 1.02527 0.90873 1.66184 1.16412 1.06091 1.32579 1.20513 0.99210 0.91645 0.94776 1.20460 1.02857 0.96693 0.93993 1.25125 1.13529 1.01202 0.96127 1.19770 0.85507 0.93829 1.07420 1.24269 0.92490 0.80577 0.72720 1.90682 1.70044 1.34412 1.47485 1.86476 1.23721 1.39631 1.77101 1.23116 0.75400 0.99842 1.01117 1.21456 0.95953 0.94302 1.01386 1.18953 0.90573 0.96343 0.95442 1.21663 0.92973 0.98978 1.44413 0.91531 1.26014 0.97584 1.00702 0.95605 1.70113 1.04002 1.33282 1.50027 0.85334 0.78460 0.79027 0.77840 1.18243 1.20441 1.20462 1.83772 1.59325 1.04964 1.11699 0.92570 0.92026 0.93016 0.90922 0.91544 0.92331 0.91397 0.87989 0.88704 0.88143 0.90914 0.90851 0.82666 0.83716 0.92078 0.92185 0.91320 0.91237 0.98570 0.98592 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 71.98 0.71 -0.55 16 2 C -0.12 -1.04 5.93 30.59 0.18 -0.86 16 3 C -0.11 -1.20 5.20 30.59 0.16 -1.04 16 4 C -0.04 -0.62 5.80 29.85 0.17 -0.45 16 5 C 0.05 1.06 6.64 88.52 0.59 1.65 16 6 N -0.50 -12.22 10.53 -179.39 -1.89 -14.11 16 7 C 0.07 1.65 6.74 41.52 0.28 1.93 16 8 C -0.08 -1.50 9.82 71.24 0.70 -0.80 16 9 C -0.24 -5.19 5.08 24.64 0.13 -5.07 16 10 C -0.03 -0.47 5.74 29.10 0.17 -0.31 16 11 C 0.46 12.90 7.95 71.24 0.57 13.46 16 12 O -0.54 -19.24 15.78 21.98 0.35 -18.89 16 13 O -0.35 -10.93 10.22 -51.46 -0.53 -11.46 16 14 C 0.08 2.89 5.47 71.98 0.39 3.29 16 15 C -0.09 -3.81 5.53 30.59 0.17 -3.65 16 16 C 0.02 1.27 4.97 29.85 0.15 1.41 16 17 C -0.54 -30.55 9.11 25.60 0.23 -30.32 16 18 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 19 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 20 N -0.93 -56.85 13.29 21.45 0.28 -56.56 16 21 Si 0.97 43.82 29.54 68.60 2.03 45.85 16 22 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 23 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 24 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 25 S 0.14 2.84 23.18 -56.49 -1.31 1.53 16 26 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.05 0.45 8.14 -2.38 -0.02 0.43 16 29 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.07 0.73 8.14 -2.39 -0.02 0.72 16 33 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.07 1.34 7.35 -2.39 -0.02 1.32 16 38 H 0.16 1.91 7.43 -2.38 -0.02 1.89 16 39 H 0.15 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.06 2.30 8.13 -2.39 -0.02 2.28 16 41 H 0.06 2.27 8.13 -2.39 -0.02 2.25 16 42 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 43 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 44 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 45 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 46 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -71.89 400.58 4.94 -66.95 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: 0.94 Total: 7.59 kcal Atomic # 6 Polarization: -25.96 SS G_CDS: 5.06 Total: -20.90 kcal Atomic # 7 Polarization: -69.07 SS G_CDS: -1.60 Total: -70.67 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -0.18 Total: -30.35 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: 2.84 SS G_CDS: -1.31 Total: 1.53 kcal Total: -71.89 4.94 -66.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884805659.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.196 kcal (2) G-P(sol) polarization free energy of solvation -71.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds