Wall clock time and date at job start Tue Mar 31 2020 14:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.46941 * 2 1 4 4 C 1.53003 * 109.46904 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.46904 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47224 * 180.02562 * 5 4 3 7 7 N 1.46500 * 109.47122 * 180.02562 * 6 5 4 8 8 S 1.65599 * 119.99879 * 164.99639 * 7 6 5 9 9 O 1.42101 * 106.40542 * 311.46159 * 8 7 6 10 10 O 1.42098 * 106.40229 * 178.53922 * 8 7 6 11 11 C 1.76203 * 107.21703 * 65.00041 * 8 7 6 12 12 C 1.38233 * 120.00082 * 90.00045 * 11 8 7 13 13 C 1.38237 * 120.00111 * 179.97438 * 12 11 8 14 14 C 1.38231 * 119.99929 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99766 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47151 * 90.00279 * 15 14 13 17 17 H 1.08002 * 119.99761 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99694 * 180.27762 * 16 15 14 19 19 N 1.31514 * 120.00482 * 359.71466 * 18 16 15 20 20 Si 1.86801 * 119.99746 * 179.72062 * 18 16 15 21 21 H 1.48494 * 109.47230 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47301 * 119.99669 * 20 18 16 23 23 H 1.48498 * 109.47430 * 239.99516 * 20 18 16 24 24 C 1.38233 * 120.00119 * 0.25187 * 14 13 12 25 25 C 1.38232 * 119.99735 * 359.49690 * 24 14 13 26 26 H 1.09004 * 109.47077 * 299.99766 * 1 2 3 27 27 H 1.08995 * 109.47291 * 60.00235 * 1 2 3 28 28 H 1.09001 * 109.47261 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47383 * 240.00255 * 2 1 3 30 30 H 1.08997 * 109.47798 * 119.99886 * 2 1 3 31 31 H 1.08998 * 109.47278 * 60.00592 * 3 2 1 32 32 H 1.09003 * 109.47217 * 300.00000 * 3 2 1 33 33 H 1.08995 * 109.47487 * 60.00214 * 4 3 2 34 34 H 1.08995 * 109.47224 * 299.99701 * 4 3 2 35 35 H 1.09004 * 109.47043 * 60.00109 * 5 4 3 36 36 H 1.09003 * 109.47217 * 299.99895 * 5 4 3 37 37 H 1.08995 * 109.47527 * 59.99456 * 6 5 4 38 38 H 1.09003 * 109.46770 * 299.99963 * 6 5 4 39 39 H 0.96990 * 120.00143 * 345.00111 * 7 6 5 40 40 H 1.08000 * 120.00181 * 359.97438 * 12 11 8 41 41 H 1.08003 * 119.99517 * 179.97438 * 13 12 11 42 42 H 1.09000 * 109.47088 * 329.99418 * 15 14 13 43 43 H 1.09007 * 109.46560 * 209.99923 * 15 14 13 44 44 H 0.96995 * 120.00207 * 179.97438 * 19 18 16 45 45 H 1.08002 * 120.00409 * 179.72430 * 24 14 13 46 46 H 1.08008 * 119.99912 * 180.25278 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 6 4.0799 2.8851 0.0000 6 6 5.6099 2.8852 -0.0013 7 7 6.0982 4.2664 -0.0001 8 16 7.6805 4.5849 0.3703 9 8 7.9660 3.8667 1.5627 10 8 7.8451 5.9913 0.2518 11 6 8.6686 3.8600 -0.8958 12 6 8.9982 4.5932 -2.0203 13 6 9.7738 4.0247 -3.0134 14 6 10.2193 2.7227 -2.8821 15 6 11.0644 2.1027 -3.9650 16 6 12.5205 2.3632 -3.6770 17 1 12.8054 2.9222 -2.7979 18 6 13.4884 1.8933 -4.5389 19 7 13.1415 1.2130 -5.6096 20 14 15.2930 2.2229 -4.1860 21 1 15.4169 3.0044 -2.9294 22 1 16.0126 0.9322 -4.0397 23 1 15.8841 2.9947 -5.3086 24 6 9.8848 1.9875 -1.7603 25 6 9.1136 2.5578 -0.7649 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6765 1.9564 -0.8900 33 1 3.9329 0.9289 -0.8908 34 1 3.9336 0.9286 0.8891 35 1 3.7169 3.3984 0.8905 36 1 3.7162 3.3995 -0.8896 37 1 5.9726 2.3720 -0.8919 38 1 5.9740 2.3707 0.8881 39 1 5.4947 4.9943 -0.2161 40 1 8.6499 5.6103 -2.1231 41 1 10.0310 4.5975 -3.8921 42 1 10.8002 2.5408 -4.9276 43 1 10.8864 1.0277 -3.9940 44 1 13.8225 0.8827 -6.2162 45 1 10.2291 0.9688 -1.6598 46 1 8.8557 1.9847 0.1135 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884872506.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:09 Heat of formation + Delta-G solvation = -94.043209 kcal Electronic energy + Delta-G solvation = -24521.242488 eV Core-core repulsion = 20922.085516 eV Total energy + Delta-G solvation = -3599.156972 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -38.81001 -37.42496 -37.04158 -35.76101 -35.37311 -33.68641 -32.17889 -31.56392 -30.58342 -28.01290 -27.43851 -24.05462 -23.73476 -22.36396 -21.66885 -21.35930 -20.88672 -19.35778 -17.83213 -17.23352 -16.46510 -16.43613 -16.21531 -15.25623 -15.11755 -14.98186 -14.39072 -14.37452 -14.12360 -13.85437 -13.57454 -13.46831 -13.11848 -12.85453 -12.76617 -12.26741 -12.12782 -12.02030 -11.99650 -11.93413 -11.81707 -11.70343 -11.49830 -11.28862 -11.19266 -10.94865 -10.93600 -10.83534 -10.79271 -10.51716 -10.49849 -9.80091 -9.68556 -9.54940 -8.59887 -8.55116 -8.39220 -6.18230 -4.23144 0.51467 1.32327 1.78740 3.07771 3.22533 3.30635 3.36037 3.76633 4.11130 4.27760 4.36868 4.50912 4.54276 4.61060 4.76563 4.84059 4.99448 5.09999 5.15353 5.21051 5.23154 5.26270 5.32496 5.40570 5.45683 5.54534 5.60038 5.69247 5.71480 5.76248 5.77955 5.83769 5.90428 5.93143 6.00486 6.05640 6.24256 6.32414 6.50000 6.81583 6.83439 6.90155 7.28368 7.42272 7.57947 7.77179 8.12291 8.81988 9.41965 10.91846 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013794 B = 0.002492 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.319804 B =11234.399739 C =12699.874847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.120 4.120 4 C -0.122 4.122 5 C -0.125 4.125 6 C 0.114 3.886 7 N -1.121 6.121 8 S 2.699 3.301 9 O -0.965 6.965 10 O -0.967 6.967 11 C -0.704 4.704 12 C -0.022 4.022 13 C -0.146 4.146 14 C 0.026 3.974 15 C 0.039 3.961 16 C -0.517 4.517 17 H 0.060 0.940 18 C 0.060 3.940 19 N -0.891 5.891 20 Si 0.898 3.102 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.146 4.146 25 C -0.025 4.025 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.415 0.585 40 H 0.130 0.870 41 H 0.129 0.871 42 H 0.035 0.965 43 H 0.035 0.965 44 H 0.264 0.736 45 H 0.129 0.871 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.632 0.935 9.958 24.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.165 4.165 3 C -0.157 4.157 4 C -0.160 4.160 5 C -0.164 4.164 6 C -0.012 4.012 7 N -0.880 5.880 8 S 2.791 3.209 9 O -0.955 6.955 10 O -0.957 6.957 11 C -0.793 4.793 12 C -0.041 4.041 13 C -0.165 4.165 14 C 0.026 3.974 15 C 0.002 3.998 16 C -0.555 4.555 17 H 0.078 0.922 18 C -0.142 4.142 19 N -0.530 5.530 20 Si 0.726 3.274 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.165 4.165 25 C -0.044 4.044 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.249 0.751 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.073 0.927 45 H 0.147 0.853 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -22.143 1.155 10.594 24.574 hybrid contribution 1.007 0.034 -0.760 1.262 sum -21.136 1.189 9.833 23.342 Atomic orbital electron populations 1.21779 0.96011 1.01563 1.01727 1.21548 0.95768 0.96971 1.02173 1.21615 0.95194 0.96821 1.02089 1.21578 0.95552 0.96075 1.02808 1.21779 0.93868 0.97821 1.02956 1.21351 0.95706 0.81592 1.02534 1.55567 1.29005 1.14534 1.88882 1.01522 0.72210 0.73121 0.74013 1.93554 1.83789 1.74533 1.43625 1.93564 1.85240 1.29685 1.87255 1.30320 1.23638 1.06969 1.18407 1.20772 0.94124 0.98059 0.91183 1.21250 0.99565 0.95871 0.99804 1.21122 0.88256 0.92867 0.95180 1.18546 0.93390 0.96506 0.91333 1.21011 0.89552 1.35686 1.09215 0.92217 1.25008 0.99480 0.94838 0.94879 1.69953 1.33800 1.36415 1.12820 0.86423 0.84372 0.78152 0.78471 1.19559 1.20792 1.20804 1.21245 0.99901 1.01030 0.94276 1.20786 0.93878 0.92274 0.97500 0.92841 0.92795 0.92844 0.91928 0.91988 0.92009 0.91974 0.91401 0.91470 0.91131 0.91178 0.91392 0.90204 0.75058 0.85264 0.85348 0.94711 0.94704 0.92679 0.85334 0.85269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 37.15 0.37 -0.46 16 2 C -0.13 -0.74 5.93 -26.73 -0.16 -0.90 16 3 C -0.12 -0.70 5.21 -26.73 -0.14 -0.84 16 4 C -0.12 -0.76 5.22 -26.73 -0.14 -0.90 16 5 C -0.13 -0.83 5.36 -26.73 -0.14 -0.97 16 6 C 0.11 0.98 6.22 -4.04 -0.03 0.96 16 7 N -1.12 -10.82 6.00 -10.61 -0.06 -10.89 16 8 S 2.70 36.97 5.74 -107.50 -0.62 36.35 16 9 O -0.97 -15.49 16.75 -57.17 -0.96 -16.45 16 10 O -0.97 -15.53 17.28 -57.17 -0.99 -16.52 16 11 C -0.70 -11.01 5.95 -39.58 -0.24 -11.25 16 12 C -0.02 -0.36 9.52 -39.58 -0.38 -0.73 16 13 C -0.15 -2.71 9.70 -39.58 -0.38 -3.10 16 14 C 0.03 0.54 5.07 -104.62 -0.53 0.01 16 15 C 0.04 0.95 5.10 -29.03 -0.15 0.80 16 16 C -0.52 -14.01 9.09 -34.44 -0.31 -14.33 16 17 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -25.51 13.29 55.43 0.74 -24.77 16 20 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 C -0.15 -2.68 9.70 -39.59 -0.38 -3.06 16 25 C -0.02 -0.40 9.52 -39.58 -0.38 -0.78 16 26 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.70 7.75 -51.93 -0.40 0.30 16 39 H 0.42 3.10 8.65 -34.47 -0.30 2.80 16 40 H 0.13 1.82 7.62 -52.49 -0.40 1.42 16 41 H 0.13 2.26 8.06 -52.48 -0.42 1.84 16 42 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 43 H 0.03 0.88 8.08 -51.93 -0.42 0.46 16 44 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 45 H 0.13 2.23 8.06 -52.49 -0.42 1.81 16 46 H 0.13 1.77 7.62 -52.48 -0.40 1.37 16 LS Contribution 394.57 15.07 5.95 5.95 Total: -1.00 -32.65 394.57 -11.85 -44.50 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -7.80 Total: -0.30 kcal Atomic # 6 Polarization: -30.91 SS G_CDS: -3.08 Total: -33.99 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: 0.67 Total: -35.66 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -1.95 Total: -32.97 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 36.97 SS G_CDS: -0.62 Total: 36.35 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.65 -11.85 -44.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884872506.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.545 kcal (2) G-P(sol) polarization free energy of solvation -32.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds