Wall clock time and date at job start Tue Mar 31 2020 14:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.46941 * 2 1 4 4 C 1.53003 * 109.46904 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.46904 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47224 * 180.02562 * 5 4 3 7 7 N 1.46500 * 109.47122 * 180.02562 * 6 5 4 8 8 S 1.65599 * 119.99879 * 164.99639 * 7 6 5 9 9 O 1.42101 * 106.40542 * 311.46159 * 8 7 6 10 10 O 1.42098 * 106.40229 * 178.53922 * 8 7 6 11 11 C 1.76203 * 107.21703 * 65.00041 * 8 7 6 12 12 C 1.38233 * 120.00082 * 90.00045 * 11 8 7 13 13 C 1.38237 * 120.00111 * 179.97438 * 12 11 8 14 14 C 1.38231 * 119.99929 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99766 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47151 * 90.00279 * 15 14 13 17 17 H 1.08002 * 119.99761 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99694 * 180.27762 * 16 15 14 19 19 N 1.31514 * 120.00482 * 359.71466 * 18 16 15 20 20 Si 1.86801 * 119.99746 * 179.72062 * 18 16 15 21 21 H 1.48494 * 109.47230 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47301 * 119.99669 * 20 18 16 23 23 H 1.48498 * 109.47430 * 239.99516 * 20 18 16 24 24 C 1.38233 * 120.00119 * 0.25187 * 14 13 12 25 25 C 1.38232 * 119.99735 * 359.49690 * 24 14 13 26 26 H 1.09004 * 109.47077 * 299.99766 * 1 2 3 27 27 H 1.08995 * 109.47291 * 60.00235 * 1 2 3 28 28 H 1.09001 * 109.47261 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47383 * 240.00255 * 2 1 3 30 30 H 1.08997 * 109.47798 * 119.99886 * 2 1 3 31 31 H 1.08998 * 109.47278 * 60.00592 * 3 2 1 32 32 H 1.09003 * 109.47217 * 300.00000 * 3 2 1 33 33 H 1.08995 * 109.47487 * 60.00214 * 4 3 2 34 34 H 1.08995 * 109.47224 * 299.99701 * 4 3 2 35 35 H 1.09004 * 109.47043 * 60.00109 * 5 4 3 36 36 H 1.09003 * 109.47217 * 299.99895 * 5 4 3 37 37 H 1.08995 * 109.47527 * 59.99456 * 6 5 4 38 38 H 1.09003 * 109.46770 * 299.99963 * 6 5 4 39 39 H 0.96990 * 120.00143 * 345.00111 * 7 6 5 40 40 H 1.08000 * 120.00181 * 359.97438 * 12 11 8 41 41 H 1.08003 * 119.99517 * 179.97438 * 13 12 11 42 42 H 1.09000 * 109.47088 * 329.99418 * 15 14 13 43 43 H 1.09007 * 109.46560 * 209.99923 * 15 14 13 44 44 H 0.96995 * 120.00207 * 179.97438 * 19 18 16 45 45 H 1.08002 * 120.00409 * 179.72430 * 24 14 13 46 46 H 1.08008 * 119.99912 * 180.25278 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 6 4.0799 2.8851 0.0000 6 6 5.6099 2.8852 -0.0013 7 7 6.0982 4.2664 -0.0001 8 16 7.6805 4.5849 0.3703 9 8 7.9660 3.8667 1.5627 10 8 7.8451 5.9913 0.2518 11 6 8.6686 3.8600 -0.8958 12 6 8.9982 4.5932 -2.0203 13 6 9.7738 4.0247 -3.0134 14 6 10.2193 2.7227 -2.8821 15 6 11.0644 2.1027 -3.9650 16 6 12.5205 2.3632 -3.6770 17 1 12.8054 2.9222 -2.7979 18 6 13.4884 1.8933 -4.5389 19 7 13.1415 1.2130 -5.6096 20 14 15.2930 2.2229 -4.1860 21 1 15.4169 3.0044 -2.9294 22 1 16.0126 0.9322 -4.0397 23 1 15.8841 2.9947 -5.3086 24 6 9.8848 1.9875 -1.7603 25 6 9.1136 2.5578 -0.7649 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6765 1.9564 -0.8900 33 1 3.9329 0.9289 -0.8908 34 1 3.9336 0.9286 0.8891 35 1 3.7169 3.3984 0.8905 36 1 3.7162 3.3995 -0.8896 37 1 5.9726 2.3720 -0.8919 38 1 5.9740 2.3707 0.8881 39 1 5.4947 4.9943 -0.2161 40 1 8.6499 5.6103 -2.1231 41 1 10.0310 4.5975 -3.8921 42 1 10.8002 2.5408 -4.9276 43 1 10.8864 1.0277 -3.9940 44 1 13.8225 0.8827 -6.2162 45 1 10.2291 0.9688 -1.6598 46 1 8.8557 1.9847 0.1135 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884872506.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:09 Heat of formation + Delta-G solvation = -113.482679 kcal Electronic energy + Delta-G solvation = -24522.085446 eV Core-core repulsion = 20922.085516 eV Total energy + Delta-G solvation = -3599.999930 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.23385 -38.39657 -37.85022 -36.96782 -36.00030 -35.59979 -33.32345 -32.75253 -31.96113 -29.25098 -28.57836 -25.60041 -24.64027 -23.72365 -22.50639 -22.19059 -21.81516 -20.44322 -18.99266 -18.59498 -18.31660 -17.31779 -16.90431 -16.78766 -16.34325 -15.99294 -15.68995 -15.52430 -15.21061 -14.65124 -14.64255 -14.44845 -14.22243 -14.05614 -13.90299 -13.44263 -13.41784 -13.39076 -13.22806 -13.14919 -12.82530 -12.69376 -12.68053 -12.57056 -12.33123 -12.14348 -12.04132 -11.75457 -11.67775 -11.64607 -11.43385 -11.33529 -11.28228 -10.66744 -10.44813 -9.96313 -9.95165 -8.28139 -6.40749 -0.61060 -0.06374 0.39698 1.36531 1.38076 1.50788 2.03678 2.34172 2.56768 2.83248 3.04482 3.32349 3.80842 3.89969 3.97560 4.03714 4.06727 4.15834 4.26300 4.32856 4.43896 4.47717 4.52114 4.59616 4.64350 4.80118 4.81707 4.91175 4.93134 4.95502 5.04099 5.10732 5.12464 5.20033 5.24573 5.25593 5.27717 5.32688 5.33332 5.43862 5.53882 5.58978 5.66490 5.85965 5.92282 6.09304 6.12844 6.71339 7.28402 8.82127 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013794 B = 0.002492 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.319804 B =11234.399739 C =12699.874847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.129 4.129 3 C -0.117 4.117 4 C -0.122 4.122 5 C -0.120 4.120 6 C 0.104 3.896 7 N -1.104 6.104 8 S 2.727 3.273 9 O -0.984 6.984 10 O -0.987 6.987 11 C -0.701 4.701 12 C -0.019 4.019 13 C -0.156 4.156 14 C -0.005 4.005 15 C 0.048 3.952 16 C -0.533 4.533 17 H 0.053 0.947 18 C 0.009 3.991 19 N -0.925 5.925 20 Si 0.965 3.035 21 H -0.268 1.268 22 H -0.275 1.275 23 H -0.275 1.275 24 C -0.154 4.154 25 C -0.020 4.020 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.429 0.571 40 H 0.155 0.845 41 H 0.129 0.871 42 H 0.013 0.987 43 H 0.014 0.986 44 H 0.267 0.733 45 H 0.131 0.869 46 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.731 1.755 11.507 26.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.167 4.167 3 C -0.155 4.155 4 C -0.160 4.160 5 C -0.159 4.159 6 C -0.021 4.021 7 N -0.867 5.867 8 S 2.817 3.183 9 O -0.974 6.974 10 O -0.977 6.977 11 C -0.788 4.788 12 C -0.038 4.038 13 C -0.175 4.175 14 C -0.005 4.005 15 C 0.011 3.989 16 C -0.570 4.570 17 H 0.072 0.928 18 C -0.190 4.190 19 N -0.565 5.565 20 Si 0.789 3.211 21 H -0.192 1.192 22 H -0.200 1.200 23 H -0.201 1.201 24 C -0.173 4.173 25 C -0.039 4.039 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.266 0.734 40 H 0.173 0.827 41 H 0.147 0.853 42 H 0.031 0.969 43 H 0.032 0.968 44 H 0.076 0.924 45 H 0.149 0.851 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -23.236 1.977 12.125 26.284 hybrid contribution 1.200 -0.217 -1.184 1.700 sum -22.036 1.760 10.941 24.665 Atomic orbital electron populations 1.21783 0.95717 1.01739 1.01878 1.21562 0.96068 0.97046 1.01974 1.21589 0.94828 0.96757 1.02291 1.21575 0.95833 0.95866 1.02729 1.21750 0.92226 0.98158 1.03742 1.21582 0.97159 0.80617 1.02761 1.55206 1.27311 1.15735 1.88438 1.00711 0.72599 0.72020 0.73001 1.93534 1.84626 1.74881 1.44311 1.93536 1.85983 1.30887 1.87306 1.30810 1.22965 1.06613 1.18375 1.21027 0.93089 0.99163 0.90556 1.21309 1.00204 0.95232 1.00770 1.20833 0.90084 0.94233 0.95356 1.18268 0.93318 0.95328 0.91965 1.21319 0.91300 1.35453 1.08973 0.92837 1.25870 1.03955 0.94566 0.94650 1.70057 1.35316 1.37355 1.13736 0.85401 0.79034 0.78248 0.78413 1.19229 1.20008 1.20061 1.21312 1.00504 1.01220 0.94291 1.21051 0.92618 0.92684 0.97510 0.92588 0.92737 0.92705 0.92289 0.92058 0.91687 0.91861 0.91671 0.91446 0.90436 0.90340 0.91141 0.90171 0.73394 0.82708 0.85309 0.96869 0.96753 0.92368 0.85142 0.82544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.91 71.98 0.71 -0.76 16 2 C -0.13 -1.34 5.93 30.59 0.18 -1.16 16 3 C -0.12 -1.15 5.21 30.60 0.16 -0.99 16 4 C -0.12 -1.28 5.22 30.60 0.16 -1.12 16 5 C -0.12 -1.26 5.36 30.60 0.16 -1.10 16 6 C 0.10 1.51 6.22 86.38 0.54 2.05 16 7 N -1.10 -18.07 6.00 -187.49 -1.12 -19.19 16 8 S 2.73 67.67 5.74 -56.49 -0.32 67.34 16 9 O -0.98 -29.04 16.75 -128.00 -2.14 -31.18 16 10 O -0.99 -29.16 17.28 -128.00 -2.21 -31.37 16 11 C -0.70 -20.52 5.95 22.27 0.13 -20.39 16 12 C -0.02 -0.60 9.52 22.27 0.21 -0.39 16 13 C -0.16 -5.84 9.70 22.27 0.22 -5.62 16 14 C 0.00 -0.20 5.07 -19.87 -0.10 -0.30 16 15 C 0.05 2.46 5.10 29.10 0.15 2.61 16 16 C -0.53 -29.71 9.09 25.60 0.23 -29.48 16 17 H 0.05 2.98 7.74 -2.91 -0.02 2.95 16 18 C 0.01 0.48 5.46 84.65 0.46 0.94 16 19 N -0.93 -54.19 13.29 21.45 0.28 -53.91 16 20 Si 0.96 43.71 29.54 68.60 2.03 45.74 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 22 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 23 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 24 C -0.15 -5.69 9.70 22.27 0.22 -5.47 16 25 C -0.02 -0.60 9.52 22.27 0.21 -0.39 16 26 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.60 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.08 1.20 7.75 -2.39 -0.02 1.18 16 39 H 0.43 4.99 8.65 -96.76 -0.84 4.15 16 40 H 0.16 3.99 7.62 -2.91 -0.02 3.96 16 41 H 0.13 4.65 8.06 -2.91 -0.02 4.63 16 42 H 0.01 0.71 8.09 -2.39 -0.02 0.69 16 43 H 0.01 0.77 8.08 -2.38 -0.02 0.75 16 44 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 45 H 0.13 4.62 8.06 -2.91 -0.02 4.59 16 46 H 0.16 3.89 7.62 -2.91 -0.02 3.86 16 Total: -1.00 -69.98 394.57 0.26 -69.72 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 0.11 Total: 14.42 kcal Atomic # 6 Polarization: -65.21 SS G_CDS: 3.65 Total: -61.57 kcal Atomic # 7 Polarization: -72.26 SS G_CDS: -0.84 Total: -73.10 kcal Atomic # 8 Polarization: -58.20 SS G_CDS: -4.36 Total: -62.56 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: 67.67 SS G_CDS: -0.32 Total: 67.34 kcal Total: -69.98 0.26 -69.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884872506.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.765 kcal (2) G-P(sol) polarization free energy of solvation -69.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds