Wall clock time and date at job start Tue Mar 31 2020 15:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46925 * 2 1 4 4 C 1.52995 * 109.47051 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.46824 * 180.02562 * 4 3 2 6 6 C 1.46499 * 119.99936 * 85.00335 * 5 4 3 7 7 C 1.53001 * 109.47277 * 84.99719 * 6 5 4 8 8 S 1.65597 * 120.00079 * 264.72374 * 5 4 3 9 9 O 1.42095 * 106.40469 * 203.54076 * 8 5 4 10 10 O 1.42098 * 106.40441 * 336.46418 * 8 5 4 11 11 C 1.76207 * 107.21624 * 90.00391 * 8 5 4 12 12 C 1.38238 * 119.99673 * 269.72920 * 11 8 5 13 13 C 1.38231 * 119.99694 * 179.76874 * 12 11 8 14 14 C 1.38237 * 120.00023 * 0.50296 * 13 12 11 15 15 C 1.50703 * 120.00079 * 179.72591 * 14 13 12 16 16 C 1.50697 * 109.47112 * 270.01993 * 15 14 13 17 17 H 1.07999 * 119.99838 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99840 * 179.97438 * 16 15 14 19 19 N 1.31509 * 119.99882 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99807 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47396 * 60.00184 * 20 18 16 22 22 H 1.48498 * 109.47065 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47089 * 300.00021 * 20 18 16 24 24 C 1.38232 * 120.00056 * 359.74738 * 14 13 12 25 25 C 1.38224 * 119.99967 * 90.00006 * 11 8 5 26 26 H 1.09002 * 109.46833 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46918 * 299.99255 * 1 2 3 28 28 H 1.08997 * 109.46986 * 59.99779 * 1 2 3 29 29 H 1.08999 * 109.46918 * 240.00745 * 2 1 3 30 30 H 1.08999 * 109.47653 * 119.99898 * 2 1 3 31 31 H 1.09003 * 109.46645 * 60.00113 * 3 2 1 32 32 H 1.09002 * 109.47370 * 300.00379 * 3 2 1 33 33 H 1.08999 * 109.46886 * 60.00687 * 4 3 2 34 34 H 1.08999 * 109.47559 * 299.99918 * 4 3 2 35 35 H 1.08991 * 109.47463 * 204.99792 * 6 5 4 36 36 H 1.09000 * 109.46878 * 325.00020 * 6 5 4 37 37 H 1.09005 * 109.47307 * 300.00055 * 7 6 5 38 38 H 1.08995 * 109.46954 * 59.99844 * 7 6 5 39 39 H 1.08996 * 109.47521 * 179.97438 * 7 6 5 40 40 H 1.07998 * 120.00071 * 359.97438 * 12 11 8 41 41 H 1.08002 * 120.00049 * 180.22469 * 13 12 11 42 42 H 1.09002 * 109.46915 * 30.02122 * 15 14 13 43 43 H 1.09004 * 109.46770 * 150.02118 * 15 14 13 44 44 H 0.97004 * 120.00260 * 180.02562 * 19 18 16 45 45 H 1.08002 * 120.00465 * 179.97438 * 24 14 13 46 46 H 1.08006 * 120.00306 * 359.97438 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0582 2.8239 0.0000 6 6 4.1987 3.5506 1.2642 7 6 5.5559 3.2255 1.8913 8 16 4.4579 3.5615 -1.4278 9 8 5.3727 4.5987 -1.1014 10 8 4.7590 2.5204 -2.3468 11 6 3.0036 4.3525 -2.0312 12 6 2.1421 3.6691 -2.8689 13 6 0.9987 4.2881 -3.3384 14 6 0.7222 5.5938 -2.9786 15 6 -0.5212 6.2706 -3.4954 16 6 -0.2125 6.9607 -4.7990 17 1 0.7842 6.9135 -5.2122 18 6 -1.2028 7.6514 -5.4648 19 7 -2.4166 7.7084 -4.9619 20 14 -0.8203 8.5062 -7.0811 21 1 -0.3532 7.5043 -8.0726 22 1 -2.0458 9.1722 -7.5910 23 1 0.2419 9.5213 -6.8650 24 6 1.5863 6.2789 -2.1450 25 6 2.7271 5.6581 -1.6713 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 1.8935 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9565 -0.8900 33 1 3.9329 0.9290 -0.8909 34 1 3.9338 0.9287 0.8891 35 1 4.1325 4.6222 1.0767 36 1 3.4025 3.2511 1.9458 37 1 5.6221 2.1538 2.0790 38 1 6.3520 3.5249 1.2098 39 1 5.6606 3.7665 2.8317 40 1 2.3606 2.6506 -3.1538 41 1 0.3237 3.7530 -3.9900 42 1 -1.3010 5.5258 -3.6543 43 1 -0.8639 7.0059 -2.7673 44 1 -3.1135 8.1941 -5.4304 45 1 1.3705 7.2992 -1.8642 46 1 3.4022 6.1934 -1.0200 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884875846.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:23 Heat of formation + Delta-G solvation = -77.930755 kcal Electronic energy + Delta-G solvation = -26015.126437 eV Core-core repulsion = 22416.668153 eV Total energy + Delta-G solvation = -3598.458283 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -38.80467 -37.64227 -37.22028 -35.74820 -34.73016 -33.67822 -31.56217 -31.04658 -30.57315 -28.23901 -27.42499 -24.11479 -23.70399 -22.62813 -22.33368 -21.23624 -20.80900 -18.84915 -17.84417 -17.37850 -16.45382 -16.38693 -15.45966 -15.22001 -15.06852 -14.53498 -14.37979 -14.26655 -14.06708 -13.80384 -13.36077 -13.24670 -13.09415 -12.86927 -12.66575 -12.41198 -12.23517 -12.01703 -11.95680 -11.88818 -11.70658 -11.59287 -11.48713 -11.29916 -11.23245 -11.07108 -10.91096 -10.90342 -10.67244 -10.50136 -10.47415 -9.76088 -9.66722 -9.19826 -8.58280 -8.53672 -8.36903 -6.17372 -4.22471 0.48227 1.33997 1.79613 2.96825 3.25941 3.30061 3.33627 3.79198 4.09488 4.35526 4.37048 4.51018 4.70943 4.79550 4.94042 5.00574 5.06763 5.15594 5.19909 5.22097 5.24698 5.35240 5.40107 5.46789 5.54564 5.65184 5.67059 5.72369 5.78326 5.81294 5.91434 5.94071 5.99263 6.04266 6.12603 6.19349 6.25418 6.33263 6.44451 6.55542 6.84029 6.90746 7.28935 7.43237 7.58838 7.77521 8.13043 8.82054 9.42468 10.92615 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014810 B = 0.003423 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.208905 B = 8177.615482 C = 9196.310193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.147 4.147 4 C 0.115 3.885 5 N -0.999 5.999 6 C 0.121 3.879 7 C -0.173 4.173 8 S 2.692 3.308 9 O -0.962 6.962 10 O -0.964 6.964 11 C -0.702 4.702 12 C -0.023 4.023 13 C -0.145 4.145 14 C 0.026 3.974 15 C 0.040 3.960 16 C -0.519 4.519 17 H 0.058 0.942 18 C 0.061 3.939 19 N -0.892 5.892 20 Si 0.899 3.101 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.275 1.275 24 C -0.145 4.145 25 C -0.024 4.024 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.128 0.872 41 H 0.128 0.872 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.265 0.735 45 H 0.128 0.872 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.847 -13.350 14.663 22.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.186 4.186 4 C -0.010 4.010 5 N -0.835 5.835 6 C -0.004 4.004 7 C -0.232 4.232 8 S 2.786 3.214 9 O -0.953 6.953 10 O -0.954 6.954 11 C -0.792 4.792 12 C -0.042 4.042 13 C -0.164 4.164 14 C 0.026 3.974 15 C 0.003 3.997 16 C -0.557 4.557 17 H 0.077 0.923 18 C -0.141 4.141 19 N -0.530 5.530 20 Si 0.726 3.274 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.200 1.200 24 C -0.164 4.164 25 C -0.043 4.043 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.146 0.854 41 H 0.146 0.854 42 H 0.053 0.947 43 H 0.052 0.948 44 H 0.074 0.926 45 H 0.146 0.854 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 10.504 -13.292 14.265 22.147 hybrid contribution -0.743 0.815 -0.933 1.445 sum 9.761 -12.476 13.332 20.704 Atomic orbital electron populations 1.21771 0.95587 1.01530 1.02222 1.21450 0.96212 0.96215 1.02086 1.22155 0.95527 0.97506 1.03453 1.21441 0.93935 0.81432 1.04173 1.57618 1.82024 1.22452 1.21412 1.21217 0.97920 0.96360 0.84937 1.22222 0.97802 1.01937 1.01259 1.01812 0.74214 0.73128 0.72276 1.93547 1.60291 1.57713 1.83704 1.93533 1.83453 1.56796 1.61665 1.30392 1.23985 1.07327 1.17473 1.20737 0.92354 0.98651 0.92500 1.21232 0.97778 0.95759 1.01589 1.21105 0.96249 0.92397 0.87693 1.18527 0.88889 0.95734 0.96519 1.20936 0.96658 1.32861 1.05197 0.92344 1.24997 0.94900 0.96159 0.98031 1.69935 1.01741 1.42013 1.39304 0.86539 0.77740 0.79811 0.83301 1.20031 1.21099 1.20024 1.21238 0.94878 1.00490 0.99789 1.20753 0.95696 0.92069 0.95800 0.92831 0.92793 0.92351 0.91672 0.92029 0.91314 0.91112 0.88942 0.90119 0.89968 0.90319 0.92375 0.91817 0.91442 0.85407 0.85414 0.94749 0.94753 0.92571 0.85396 0.85414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 37.16 0.37 -0.90 16 2 C -0.12 -0.95 5.93 -26.73 -0.16 -1.11 16 3 C -0.15 -1.33 5.54 -26.73 -0.15 -1.48 16 4 C 0.12 1.04 5.68 -4.04 -0.02 1.02 16 5 N -1.00 -10.69 2.78 -114.38 -0.32 -11.00 16 6 C 0.12 1.07 6.06 -4.04 -0.02 1.05 16 7 C -0.17 -1.40 10.24 37.16 0.38 -1.02 16 8 S 2.69 38.83 5.65 -107.50 -0.61 38.23 16 9 O -0.96 -15.70 16.25 -57.17 -0.93 -16.63 16 10 O -0.96 -15.82 15.83 -57.17 -0.90 -16.72 16 11 C -0.70 -11.21 5.97 -39.59 -0.24 -11.45 16 12 C -0.02 -0.38 8.47 -39.58 -0.34 -0.71 16 13 C -0.14 -2.69 9.70 -39.58 -0.38 -3.07 16 14 C 0.03 0.54 5.07 -104.62 -0.53 0.01 16 15 C 0.04 0.98 5.10 -29.04 -0.15 0.83 16 16 C -0.52 -14.09 9.09 -34.44 -0.31 -14.40 16 17 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -25.53 13.29 55.43 0.74 -24.79 16 20 Si 0.90 21.16 29.54 -169.99 -5.02 16.13 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 23 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 24 C -0.15 -2.70 9.70 -39.58 -0.38 -3.08 16 25 C -0.02 -0.39 9.52 -39.58 -0.38 -0.77 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.75 7.06 -51.93 -0.37 0.39 16 33 H 0.09 0.89 6.91 -51.93 -0.36 0.53 16 34 H 0.08 0.56 8.11 -51.93 -0.42 0.13 16 35 H 0.08 0.75 7.61 -51.93 -0.40 0.35 16 36 H 0.08 0.54 8.11 -51.93 -0.42 0.12 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.13 1.82 7.61 -52.49 -0.40 1.42 16 41 H 0.13 2.26 8.06 -52.49 -0.42 1.83 16 42 H 0.03 0.87 8.09 -51.93 -0.42 0.46 16 43 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 44 H 0.26 7.17 8.31 -40.82 -0.34 6.84 16 45 H 0.13 2.26 8.06 -52.49 -0.42 1.84 16 46 H 0.13 1.80 7.62 -52.48 -0.40 1.40 16 LS Contribution 390.76 15.07 5.89 5.89 Total: -1.00 -31.78 390.76 -11.36 -43.14 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -7.79 Total: -0.74 kcal Atomic # 6 Polarization: -31.08 SS G_CDS: -2.41 Total: -33.49 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 0.42 Total: -35.80 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -1.83 Total: -33.36 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 38.83 SS G_CDS: -0.61 Total: 38.23 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.78 -11.36 -43.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884875846.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.794 kcal (2) G-P(sol) polarization free energy of solvation -31.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds