Wall clock time and date at job start Tue Mar 31 2020 15:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46925 * 2 1 4 4 C 1.52995 * 109.47051 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.46824 * 180.02562 * 4 3 2 6 6 C 1.46499 * 119.99936 * 85.00335 * 5 4 3 7 7 C 1.53001 * 109.47277 * 84.99719 * 6 5 4 8 8 S 1.65597 * 120.00079 * 264.72374 * 5 4 3 9 9 O 1.42095 * 106.40469 * 203.54076 * 8 5 4 10 10 O 1.42098 * 106.40441 * 336.46418 * 8 5 4 11 11 C 1.76207 * 107.21624 * 90.00391 * 8 5 4 12 12 C 1.38238 * 119.99673 * 269.72920 * 11 8 5 13 13 C 1.38231 * 119.99694 * 179.76874 * 12 11 8 14 14 C 1.38237 * 120.00023 * 0.50296 * 13 12 11 15 15 C 1.50703 * 120.00079 * 179.72591 * 14 13 12 16 16 C 1.50697 * 109.47112 * 270.01993 * 15 14 13 17 17 H 1.07999 * 119.99838 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99840 * 179.97438 * 16 15 14 19 19 N 1.31509 * 119.99882 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99807 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47396 * 60.00184 * 20 18 16 22 22 H 1.48498 * 109.47065 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47089 * 300.00021 * 20 18 16 24 24 C 1.38232 * 120.00056 * 359.74738 * 14 13 12 25 25 C 1.38224 * 119.99967 * 90.00006 * 11 8 5 26 26 H 1.09002 * 109.46833 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46918 * 299.99255 * 1 2 3 28 28 H 1.08997 * 109.46986 * 59.99779 * 1 2 3 29 29 H 1.08999 * 109.46918 * 240.00745 * 2 1 3 30 30 H 1.08999 * 109.47653 * 119.99898 * 2 1 3 31 31 H 1.09003 * 109.46645 * 60.00113 * 3 2 1 32 32 H 1.09002 * 109.47370 * 300.00379 * 3 2 1 33 33 H 1.08999 * 109.46886 * 60.00687 * 4 3 2 34 34 H 1.08999 * 109.47559 * 299.99918 * 4 3 2 35 35 H 1.08991 * 109.47463 * 204.99792 * 6 5 4 36 36 H 1.09000 * 109.46878 * 325.00020 * 6 5 4 37 37 H 1.09005 * 109.47307 * 300.00055 * 7 6 5 38 38 H 1.08995 * 109.46954 * 59.99844 * 7 6 5 39 39 H 1.08996 * 109.47521 * 179.97438 * 7 6 5 40 40 H 1.07998 * 120.00071 * 359.97438 * 12 11 8 41 41 H 1.08002 * 120.00049 * 180.22469 * 13 12 11 42 42 H 1.09002 * 109.46915 * 30.02122 * 15 14 13 43 43 H 1.09004 * 109.46770 * 150.02118 * 15 14 13 44 44 H 0.97004 * 120.00260 * 180.02562 * 19 18 16 45 45 H 1.08002 * 120.00465 * 179.97438 * 24 14 13 46 46 H 1.08006 * 120.00306 * 359.97438 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0582 2.8239 0.0000 6 6 4.1987 3.5506 1.2642 7 6 5.5559 3.2255 1.8913 8 16 4.4579 3.5615 -1.4278 9 8 5.3727 4.5987 -1.1014 10 8 4.7590 2.5204 -2.3468 11 6 3.0036 4.3525 -2.0312 12 6 2.1421 3.6691 -2.8689 13 6 0.9987 4.2881 -3.3384 14 6 0.7222 5.5938 -2.9786 15 6 -0.5212 6.2706 -3.4954 16 6 -0.2125 6.9607 -4.7990 17 1 0.7842 6.9135 -5.2122 18 6 -1.2028 7.6514 -5.4648 19 7 -2.4166 7.7084 -4.9619 20 14 -0.8203 8.5062 -7.0811 21 1 -0.3532 7.5043 -8.0726 22 1 -2.0458 9.1722 -7.5910 23 1 0.2419 9.5213 -6.8650 24 6 1.5863 6.2789 -2.1450 25 6 2.7271 5.6581 -1.6713 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 1.8935 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9565 -0.8900 33 1 3.9329 0.9290 -0.8909 34 1 3.9338 0.9287 0.8891 35 1 4.1325 4.6222 1.0767 36 1 3.4025 3.2511 1.9458 37 1 5.6221 2.1538 2.0790 38 1 6.3520 3.5249 1.2098 39 1 5.6606 3.7665 2.8317 40 1 2.3606 2.6506 -3.1538 41 1 0.3237 3.7530 -3.9900 42 1 -1.3010 5.5258 -3.6543 43 1 -0.8639 7.0059 -2.7673 44 1 -3.1135 8.1941 -5.4304 45 1 1.3705 7.2992 -1.8642 46 1 3.4022 6.1934 -1.0200 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884875846.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:23 Heat of formation + Delta-G solvation = -95.589717 kcal Electronic energy + Delta-G solvation = -26015.892187 eV Core-core repulsion = 22416.668153 eV Total energy + Delta-G solvation = -3599.224033 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.25129 -38.48920 -38.35663 -36.98011 -35.61521 -35.40590 -33.33130 -31.98772 -31.71389 -29.25771 -28.96436 -25.60675 -24.77172 -23.75169 -23.37731 -22.43991 -21.87064 -19.96378 -18.90547 -18.62073 -18.47083 -17.37346 -16.87058 -16.38094 -16.15778 -15.97780 -15.64596 -15.35402 -15.01271 -14.82229 -14.61227 -14.47787 -14.10074 -13.97823 -13.89552 -13.44334 -13.41961 -13.38952 -13.24847 -13.18093 -13.08728 -12.69569 -12.66602 -12.63140 -12.27779 -12.14800 -12.05611 -11.99181 -11.87655 -11.73676 -11.66406 -11.41343 -11.33015 -10.65950 -10.09091 -9.97154 -9.89154 -8.27892 -6.40849 -0.66489 -0.07093 0.38196 1.37873 1.39460 1.47971 1.92698 2.34188 2.56772 2.77563 3.04666 3.23009 3.73674 3.84250 3.94660 4.02862 4.12913 4.14544 4.29529 4.33761 4.42340 4.45980 4.46683 4.59339 4.67855 4.74079 4.79984 4.81401 4.88977 4.92010 5.00802 5.06716 5.09788 5.15218 5.23131 5.24643 5.27769 5.31895 5.33402 5.42859 5.46235 5.54205 5.65896 5.70766 5.84877 5.91100 6.08857 6.70592 7.28228 8.81985 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014810 B = 0.003423 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.208905 B = 8177.615482 C = 9196.310193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.119 4.119 3 C -0.147 4.147 4 C 0.111 3.889 5 N -0.988 5.988 6 C 0.110 3.890 7 C -0.173 4.173 8 S 2.710 3.290 9 O -0.979 6.979 10 O -0.983 6.983 11 C -0.700 4.700 12 C -0.018 4.018 13 C -0.153 4.153 14 C -0.003 4.003 15 C 0.049 3.951 16 C -0.536 4.536 17 H 0.053 0.947 18 C 0.011 3.989 19 N -0.925 5.925 20 Si 0.963 3.037 21 H -0.269 1.269 22 H -0.278 1.278 23 H -0.269 1.269 24 C -0.154 4.154 25 C -0.019 4.019 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.041 0.959 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.049 0.951 33 H 0.087 0.913 34 H 0.112 0.888 35 H 0.079 0.921 36 H 0.105 0.895 37 H 0.070 0.930 38 H 0.042 0.958 39 H 0.084 0.916 40 H 0.150 0.850 41 H 0.128 0.872 42 H 0.013 0.987 43 H 0.013 0.987 44 H 0.268 0.732 45 H 0.130 0.870 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.569 -14.488 15.888 24.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.157 4.157 3 C -0.186 4.186 4 C -0.013 4.013 5 N -0.827 5.827 6 C -0.014 4.014 7 C -0.232 4.232 8 S 2.801 3.199 9 O -0.970 6.970 10 O -0.973 6.973 11 C -0.786 4.786 12 C -0.037 4.037 13 C -0.172 4.172 14 C -0.004 4.004 15 C 0.012 3.988 16 C -0.574 4.574 17 H 0.071 0.929 18 C -0.188 4.188 19 N -0.564 5.564 20 Si 0.788 3.212 21 H -0.194 1.194 22 H -0.203 1.203 23 H -0.194 1.194 24 C -0.172 4.172 25 C -0.038 4.038 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.068 0.932 33 H 0.105 0.895 34 H 0.130 0.870 35 H 0.097 0.903 36 H 0.123 0.877 37 H 0.089 0.911 38 H 0.062 0.938 39 H 0.103 0.897 40 H 0.168 0.832 41 H 0.146 0.854 42 H 0.031 0.969 43 H 0.032 0.968 44 H 0.077 0.923 45 H 0.148 0.852 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 12.214 -14.419 15.480 24.428 hybrid contribution -1.225 1.070 -1.180 2.009 sum 10.989 -13.349 14.301 22.438 Atomic orbital electron populations 1.21792 0.96198 1.01889 1.01473 1.21445 0.95630 0.95574 1.03059 1.22149 0.95561 0.98185 1.02741 1.21657 0.93841 0.80370 1.05447 1.57405 1.81756 1.22957 1.20602 1.21521 0.99428 0.96170 0.84271 1.22233 0.96410 1.03080 1.01465 1.01290 0.73379 0.72511 0.72721 1.93523 1.60648 1.58681 1.84115 1.93507 1.83546 1.57052 1.63206 1.30871 1.24140 1.07255 1.16366 1.20936 0.91368 0.99527 0.91856 1.21269 0.98817 0.95147 1.01955 1.20807 0.95784 0.93604 0.90157 1.18250 0.90372 0.94721 0.95409 1.21264 0.96487 1.33204 1.06417 0.92850 1.25855 0.94679 0.96799 1.01503 1.70044 1.02644 1.42867 1.40847 0.85524 0.77835 0.78805 0.79072 1.19400 1.20311 1.19357 1.21297 0.95464 1.00726 0.99758 1.21001 0.95044 0.92300 0.95499 0.91952 0.92681 0.93989 0.91669 0.90070 0.90707 0.93209 0.89512 0.86980 0.90299 0.87708 0.91078 0.93844 0.89670 0.83205 0.85389 0.96891 0.96833 0.92344 0.85215 0.82801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 9.91 71.98 0.71 -1.67 16 2 C -0.12 -1.59 5.93 30.60 0.18 -1.41 16 3 C -0.15 -2.32 5.54 30.59 0.17 -2.15 16 4 C 0.11 1.67 5.68 86.38 0.49 2.17 16 5 N -0.99 -18.55 2.78 -515.80 -1.44 -19.98 16 6 C 0.11 1.61 6.06 86.38 0.52 2.14 16 7 C -0.17 -2.27 10.24 71.98 0.74 -1.53 16 8 S 2.71 73.26 5.65 -56.49 -0.32 72.94 16 9 O -0.98 -30.23 16.25 -128.00 -2.08 -32.31 16 10 O -0.98 -30.60 15.83 -128.00 -2.03 -32.63 16 11 C -0.70 -21.48 5.97 22.27 0.13 -21.35 16 12 C -0.02 -0.57 8.47 22.27 0.19 -0.38 16 13 C -0.15 -5.80 9.70 22.27 0.22 -5.58 16 14 C 0.00 -0.14 5.07 -19.87 -0.10 -0.24 16 15 C 0.05 2.55 5.10 29.10 0.15 2.70 16 16 C -0.54 -30.05 9.09 25.60 0.23 -29.82 16 17 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 18 C 0.01 0.60 5.46 84.66 0.46 1.07 16 19 N -0.92 -54.33 13.29 21.45 0.28 -54.05 16 20 Si 0.96 43.75 29.54 68.60 2.03 45.78 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 22 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 23 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 24 C -0.15 -5.79 9.70 22.27 0.22 -5.57 16 25 C -0.02 -0.62 9.52 22.27 0.21 -0.40 16 26 H 0.06 0.82 8.14 -2.39 -0.02 0.81 16 27 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.05 1.00 7.06 -2.39 -0.02 0.98 16 33 H 0.09 1.45 6.91 -2.39 -0.02 1.44 16 34 H 0.11 1.05 8.11 -2.39 -0.02 1.03 16 35 H 0.08 1.23 7.61 -2.39 -0.02 1.21 16 36 H 0.10 1.03 8.11 -2.39 -0.02 1.01 16 37 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 38 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.15 4.10 7.61 -2.91 -0.02 4.08 16 41 H 0.13 4.70 8.06 -2.91 -0.02 4.68 16 42 H 0.01 0.70 8.09 -2.39 -0.02 0.68 16 43 H 0.01 0.73 8.09 -2.39 -0.02 0.71 16 44 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 45 H 0.13 4.70 8.06 -2.91 -0.02 4.68 16 46 H 0.15 4.04 7.62 -2.91 -0.02 4.01 16 Total: -1.00 -69.25 390.76 1.91 -67.35 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 0.93 Total: 14.94 kcal Atomic # 6 Polarization: -66.56 SS G_CDS: 4.52 Total: -62.04 kcal Atomic # 7 Polarization: -72.88 SS G_CDS: -1.15 Total: -74.03 kcal Atomic # 8 Polarization: -60.84 SS G_CDS: -4.11 Total: -64.94 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: 73.26 SS G_CDS: -0.32 Total: 72.94 kcal Total: -69.25 1.91 -67.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884875846.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.243 kcal (2) G-P(sol) polarization free energy of solvation -69.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds