Wall clock time and date at job start Tue Mar 31 2020 14:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46907 * 2 1 4 4 C 1.53000 * 109.47265 * 240.00158 * 2 1 3 5 5 C 1.52999 * 109.46976 * 119.99779 * 2 1 3 6 6 C 1.52998 * 109.47122 * 60.00353 * 5 2 1 7 7 N 1.46501 * 109.47437 * 179.97438 * 6 5 2 8 8 S 1.65599 * 120.00418 * 164.99857 * 7 6 5 9 9 O 1.42100 * 106.40241 * 311.46108 * 8 7 6 10 10 O 1.42096 * 106.40379 * 178.53729 * 8 7 6 11 11 C 1.76199 * 107.21658 * 65.00023 * 8 7 6 12 12 C 1.38238 * 120.00251 * 269.72679 * 11 8 7 13 13 C 1.38228 * 120.00121 * 179.76592 * 12 11 8 14 14 C 1.38234 * 120.00010 * 0.50740 * 13 12 11 15 15 C 1.50706 * 119.99834 * 179.72215 * 14 13 12 16 16 C 1.50701 * 109.47197 * 270.02419 * 15 14 13 17 17 H 1.07992 * 120.00089 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99824 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00175 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00076 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46982 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46919 * 119.99914 * 20 18 16 23 23 H 1.48497 * 109.47331 * 240.00202 * 20 18 16 24 24 C 1.38229 * 119.99860 * 359.74632 * 14 13 12 25 25 C 1.38234 * 120.00019 * 90.00010 * 11 8 7 26 26 H 1.08998 * 109.47157 * 299.99604 * 1 2 3 27 27 H 1.08990 * 109.47050 * 59.99886 * 1 2 3 28 28 H 1.09004 * 109.46913 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47067 * 179.97438 * 3 2 1 30 30 H 1.08990 * 109.47359 * 299.99924 * 3 2 1 31 31 H 1.09008 * 109.47024 * 60.00223 * 3 2 1 32 32 H 1.09004 * 109.46943 * 299.99722 * 4 2 1 33 33 H 1.08998 * 109.46976 * 59.99689 * 4 2 1 34 34 H 1.09000 * 109.47022 * 180.02562 * 4 2 1 35 35 H 1.08998 * 109.47681 * 300.00296 * 5 2 1 36 36 H 1.09005 * 109.47006 * 180.02562 * 5 2 1 37 37 H 1.09005 * 109.47495 * 60.00060 * 6 5 2 38 38 H 1.08996 * 109.47189 * 299.99557 * 6 5 2 39 39 H 0.97001 * 119.99713 * 345.00063 * 7 6 5 40 40 H 1.08004 * 119.99572 * 0.02562 * 12 11 8 41 41 H 1.08004 * 120.00393 * 180.23620 * 13 12 11 42 42 H 1.08991 * 109.47127 * 30.02677 * 15 14 13 43 43 H 1.09005 * 109.46919 * 150.02736 * 15 14 13 44 44 H 0.96999 * 120.00028 * 179.97438 * 19 18 16 45 45 H 1.08005 * 119.99920 * 179.97438 * 24 14 13 46 46 H 1.07999 * 120.00005 * 0.02562 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2493 6 6 1.5301 -2.1637 1.2493 7 7 2.0188 -2.8545 2.4452 8 16 1.3390 -4.2922 2.9070 9 8 -0.0683 -4.0964 2.8835 10 8 2.0454 -4.7166 4.0645 11 6 1.6988 -5.4684 1.6454 12 6 0.8248 -5.6368 0.5877 13 6 1.1095 -6.5561 -0.4045 14 6 2.2630 -7.3145 -0.3337 15 6 2.5702 -8.3212 -1.4123 16 6 1.9718 -9.6536 -1.0411 17 1 1.4235 -9.7606 -0.1169 18 6 2.1244 -10.7359 -1.8815 19 7 2.7925 -10.6058 -3.0067 20 14 1.3833 -12.3876 -1.4211 21 1 0.6867 -12.2708 -0.1147 22 1 0.4112 -12.8021 -2.4645 23 1 2.4621 -13.4029 -1.3183 24 6 3.1344 -7.1498 0.7266 25 6 2.8523 -6.2268 1.7162 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 1.6768 -1.7489 -1.2492 33 1 1.6767 -0.2074 -2.1392 34 1 3.1301 -0.7216 -1.2490 35 1 1.6767 -0.2074 2.1393 36 1 3.1300 -0.7208 1.2495 37 1 1.8935 -2.6776 0.3593 38 1 0.4401 -2.1638 1.2493 39 1 2.7407 -2.4698 2.9665 40 1 -0.0785 -5.0470 0.5345 41 1 0.4285 -6.6850 -1.2329 42 1 2.1452 -7.9826 -2.3571 43 1 3.6504 -8.4243 -1.5160 44 1 2.9002 -11.3673 -3.5978 45 1 4.0355 -7.7427 0.7821 46 1 3.5328 -6.0987 2.5450 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884933435.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:16 Heat of formation + Delta-G solvation = -84.725573 kcal Electronic energy + Delta-G solvation = -25426.601417 eV Core-core repulsion = 21827.848489 eV Total energy + Delta-G solvation = -3598.752929 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -38.81811 -38.60214 -37.11354 -35.75545 -34.92117 -33.68398 -31.56310 -30.58173 -28.92890 -27.57549 -27.54415 -27.43240 -23.74209 -23.40107 -22.32530 -20.91127 -19.64925 -18.84512 -17.80449 -17.19588 -16.49177 -16.43377 -15.43851 -15.28505 -15.05747 -14.75477 -14.45174 -14.37355 -14.24230 -13.86913 -13.69768 -13.11733 -12.85672 -12.80088 -12.42539 -12.38894 -12.23648 -12.02218 -11.97475 -11.92212 -11.87125 -11.73634 -11.67129 -11.49742 -10.98557 -10.93498 -10.91120 -10.87831 -10.73637 -10.50552 -10.49707 -9.78153 -9.67415 -9.51187 -8.59691 -8.54996 -8.38963 -6.18154 -4.23047 0.52145 1.32574 1.78973 3.08402 3.22607 3.30708 3.36077 3.77050 4.11209 4.33536 4.36857 4.45677 4.48379 4.55332 4.91368 4.97334 5.14073 5.16730 5.21519 5.23820 5.26425 5.34030 5.38506 5.45144 5.50654 5.64184 5.67135 5.71584 5.71864 5.78089 5.81287 5.90619 5.93092 5.96645 6.09883 6.12322 6.24455 6.32629 6.50278 6.82626 6.84121 6.90431 7.28491 7.42491 7.58108 7.77259 8.12378 8.82083 9.42076 10.91924 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.015722 B = 0.002942 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.561804 B = 9514.090402 C =10586.308461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.068 4.068 3 C -0.140 4.140 4 C -0.149 4.149 5 C -0.115 4.115 6 C 0.110 3.890 7 N -1.121 6.121 8 S 2.698 3.302 9 O -0.965 6.965 10 O -0.967 6.967 11 C -0.704 4.704 12 C -0.025 4.025 13 C -0.145 4.145 14 C 0.027 3.973 15 C 0.039 3.961 16 C -0.517 4.517 17 H 0.059 0.941 18 C 0.060 3.940 19 N -0.891 5.891 20 Si 0.898 3.102 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.146 4.146 25 C -0.022 4.022 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.415 0.585 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.035 0.965 43 H 0.035 0.965 44 H 0.264 0.736 45 H 0.128 0.872 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.479 22.625 6.016 23.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.069 4.069 3 C -0.198 4.198 4 C -0.206 4.206 5 C -0.154 4.154 6 C -0.016 4.016 7 N -0.880 5.880 8 S 2.791 3.209 9 O -0.955 6.955 10 O -0.958 6.958 11 C -0.793 4.793 12 C -0.045 4.045 13 C -0.164 4.164 14 C 0.026 3.974 15 C 0.002 3.998 16 C -0.555 4.555 17 H 0.078 0.922 18 C -0.142 4.142 19 N -0.530 5.530 20 Si 0.725 3.275 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.165 4.165 25 C -0.041 4.041 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.249 0.751 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.073 0.927 45 H 0.146 0.854 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.058 22.311 6.524 23.270 hybrid contribution 0.296 -1.162 -0.354 1.250 sum -0.763 21.150 6.171 22.045 Atomic orbital electron populations 1.21997 0.94325 1.02445 1.01893 1.20524 0.95954 0.95481 0.94963 1.21862 1.00961 0.95170 1.01783 1.21994 1.01195 1.00730 0.96724 1.21829 1.01246 0.94080 0.98254 1.21529 0.99872 0.93477 0.86711 1.55574 1.53004 1.39980 1.39402 1.01528 0.73478 0.72474 0.73434 1.93553 1.29755 1.85379 1.86818 1.93564 1.74461 1.81342 1.46401 1.30318 1.06883 1.22354 1.19759 1.20780 0.96170 0.96065 0.91435 1.21240 0.98189 0.97237 0.99763 1.21115 0.90863 0.90579 0.94821 1.18543 0.98316 0.91516 0.91396 1.21008 1.34913 0.93214 1.06329 0.92234 1.25004 0.95101 0.99222 0.94838 1.69955 1.40681 1.31290 1.11058 0.86429 0.79017 0.83318 0.78693 1.19559 1.20791 1.20792 1.21248 1.01175 0.99250 0.94804 1.20770 0.93545 0.92854 0.96953 0.92501 0.92521 0.91933 0.92640 0.92535 0.92683 0.91914 0.92524 0.92472 0.91041 0.91075 0.91150 0.89971 0.75091 0.85306 0.85354 0.94712 0.94726 0.92682 0.85360 0.85275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 8.12 37.16 0.30 -0.73 16 2 C -0.07 -0.46 0.80 -154.51 -0.12 -0.58 16 3 C -0.14 -0.83 8.47 37.16 0.31 -0.52 16 4 C -0.15 -1.08 8.12 37.16 0.30 -0.78 16 5 C -0.12 -0.81 4.41 -26.73 -0.12 -0.92 16 6 C 0.11 0.98 5.52 -4.04 -0.02 0.96 16 7 N -1.12 -10.95 6.00 -10.61 -0.06 -11.01 16 8 S 2.70 37.14 5.74 -107.50 -0.62 36.52 16 9 O -0.97 -15.50 16.75 -57.17 -0.96 -16.46 16 10 O -0.97 -15.59 17.28 -57.17 -0.99 -16.58 16 11 C -0.70 -11.00 5.95 -39.58 -0.24 -11.24 16 12 C -0.03 -0.40 9.52 -39.58 -0.38 -0.78 16 13 C -0.15 -2.67 9.70 -39.59 -0.38 -3.05 16 14 C 0.03 0.55 5.07 -104.62 -0.53 0.02 16 15 C 0.04 0.95 5.10 -29.03 -0.15 0.80 16 16 C -0.52 -13.99 9.09 -34.44 -0.31 -14.30 16 17 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -25.47 13.29 55.43 0.74 -24.74 16 20 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 21 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 C -0.15 -2.71 9.70 -39.59 -0.38 -3.09 16 25 C -0.02 -0.36 9.52 -39.58 -0.38 -0.73 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.46 6.43 -51.93 -0.33 0.13 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.31 8.14 -51.92 -0.42 -0.12 16 32 H 0.06 0.49 6.43 -51.93 -0.33 0.15 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.62 6.43 -51.93 -0.33 0.29 16 38 H 0.08 0.76 6.04 -51.93 -0.31 0.44 16 39 H 0.42 3.13 8.65 -34.47 -0.30 2.83 16 40 H 0.13 1.76 7.61 -52.48 -0.40 1.36 16 41 H 0.13 2.23 8.06 -52.48 -0.42 1.80 16 42 H 0.03 0.88 8.08 -51.93 -0.42 0.46 16 43 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 44 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 45 H 0.13 2.26 8.06 -52.48 -0.42 1.84 16 46 H 0.13 1.82 7.62 -52.49 -0.40 1.42 16 LS Contribution 385.30 15.07 5.81 5.81 Total: -1.00 -32.49 385.30 -10.74 -43.23 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -7.44 Total: 0.52 kcal Atomic # 6 Polarization: -31.20 SS G_CDS: -2.19 Total: -33.39 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.67 Total: -35.75 kcal Atomic # 8 Polarization: -31.09 SS G_CDS: -1.95 Total: -33.04 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 37.14 SS G_CDS: -0.62 Total: 36.52 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.49 -10.74 -43.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884933435.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.493 kcal (2) G-P(sol) polarization free energy of solvation -32.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds