Wall clock time and date at job start Tue Mar 31 2020 14:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46907 * 2 1 4 4 C 1.53000 * 109.47265 * 240.00158 * 2 1 3 5 5 C 1.52999 * 109.46976 * 119.99779 * 2 1 3 6 6 C 1.52998 * 109.47122 * 60.00353 * 5 2 1 7 7 N 1.46501 * 109.47437 * 179.97438 * 6 5 2 8 8 S 1.65599 * 120.00418 * 164.99857 * 7 6 5 9 9 O 1.42100 * 106.40241 * 311.46108 * 8 7 6 10 10 O 1.42096 * 106.40379 * 178.53729 * 8 7 6 11 11 C 1.76199 * 107.21658 * 65.00023 * 8 7 6 12 12 C 1.38238 * 120.00251 * 269.72679 * 11 8 7 13 13 C 1.38228 * 120.00121 * 179.76592 * 12 11 8 14 14 C 1.38234 * 120.00010 * 0.50740 * 13 12 11 15 15 C 1.50706 * 119.99834 * 179.72215 * 14 13 12 16 16 C 1.50701 * 109.47197 * 270.02419 * 15 14 13 17 17 H 1.07992 * 120.00089 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99824 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00175 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00076 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46982 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46919 * 119.99914 * 20 18 16 23 23 H 1.48497 * 109.47331 * 240.00202 * 20 18 16 24 24 C 1.38229 * 119.99860 * 359.74632 * 14 13 12 25 25 C 1.38234 * 120.00019 * 90.00010 * 11 8 7 26 26 H 1.08998 * 109.47157 * 299.99604 * 1 2 3 27 27 H 1.08990 * 109.47050 * 59.99886 * 1 2 3 28 28 H 1.09004 * 109.46913 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47067 * 179.97438 * 3 2 1 30 30 H 1.08990 * 109.47359 * 299.99924 * 3 2 1 31 31 H 1.09008 * 109.47024 * 60.00223 * 3 2 1 32 32 H 1.09004 * 109.46943 * 299.99722 * 4 2 1 33 33 H 1.08998 * 109.46976 * 59.99689 * 4 2 1 34 34 H 1.09000 * 109.47022 * 180.02562 * 4 2 1 35 35 H 1.08998 * 109.47681 * 300.00296 * 5 2 1 36 36 H 1.09005 * 109.47006 * 180.02562 * 5 2 1 37 37 H 1.09005 * 109.47495 * 60.00060 * 6 5 2 38 38 H 1.08996 * 109.47189 * 299.99557 * 6 5 2 39 39 H 0.97001 * 119.99713 * 345.00063 * 7 6 5 40 40 H 1.08004 * 119.99572 * 0.02562 * 12 11 8 41 41 H 1.08004 * 120.00393 * 180.23620 * 13 12 11 42 42 H 1.08991 * 109.47127 * 30.02677 * 15 14 13 43 43 H 1.09005 * 109.46919 * 150.02736 * 15 14 13 44 44 H 0.96999 * 120.00028 * 179.97438 * 19 18 16 45 45 H 1.08005 * 119.99920 * 179.97438 * 24 14 13 46 46 H 1.07999 * 120.00005 * 0.02562 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2493 6 6 1.5301 -2.1637 1.2493 7 7 2.0188 -2.8545 2.4452 8 16 1.3390 -4.2922 2.9070 9 8 -0.0683 -4.0964 2.8835 10 8 2.0454 -4.7166 4.0645 11 6 1.6988 -5.4684 1.6454 12 6 0.8248 -5.6368 0.5877 13 6 1.1095 -6.5561 -0.4045 14 6 2.2630 -7.3145 -0.3337 15 6 2.5702 -8.3212 -1.4123 16 6 1.9718 -9.6536 -1.0411 17 1 1.4235 -9.7606 -0.1169 18 6 2.1244 -10.7359 -1.8815 19 7 2.7925 -10.6058 -3.0067 20 14 1.3833 -12.3876 -1.4211 21 1 0.6867 -12.2708 -0.1147 22 1 0.4112 -12.8021 -2.4645 23 1 2.4621 -13.4029 -1.3183 24 6 3.1344 -7.1498 0.7266 25 6 2.8523 -6.2268 1.7162 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 1.6768 -1.7489 -1.2492 33 1 1.6767 -0.2074 -2.1392 34 1 3.1301 -0.7216 -1.2490 35 1 1.6767 -0.2074 2.1393 36 1 3.1300 -0.7208 1.2495 37 1 1.8935 -2.6776 0.3593 38 1 0.4401 -2.1638 1.2493 39 1 2.7407 -2.4698 2.9665 40 1 -0.0785 -5.0470 0.5345 41 1 0.4285 -6.6850 -1.2329 42 1 2.1452 -7.9826 -2.3571 43 1 3.6504 -8.4243 -1.5160 44 1 2.9002 -11.3673 -3.5978 45 1 4.0355 -7.7427 0.7821 46 1 3.5328 -6.0987 2.5450 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884933435.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:15 Heat of formation + Delta-G solvation = -104.665243 kcal Electronic energy + Delta-G solvation = -25427.466066 eV Core-core repulsion = 21827.848489 eV Total energy + Delta-G solvation = -3599.617578 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.23472 -39.19950 -38.31123 -36.97063 -35.70817 -35.58190 -33.31970 -31.96103 -29.58698 -29.24889 -28.08843 -28.06855 -25.59839 -24.11527 -23.66548 -22.47697 -20.65410 -19.57229 -18.94317 -18.58591 -18.25003 -17.39931 -16.86608 -16.43729 -16.08286 -15.92109 -15.66896 -15.37890 -15.18923 -14.86433 -14.63406 -14.46191 -14.39559 -13.92772 -13.48276 -13.41718 -13.40291 -13.24706 -13.17759 -13.15151 -12.94831 -12.69271 -12.65878 -12.52498 -12.47376 -12.31352 -12.11564 -12.04074 -11.65958 -11.49571 -11.43795 -11.40109 -11.30070 -10.66453 -10.39175 -9.96223 -9.94927 -8.27891 -6.40469 -0.61213 -0.06298 0.39828 1.36675 1.38255 1.50877 2.03166 2.34351 2.56655 2.83052 3.04837 3.32191 3.81544 3.86668 3.93075 3.96262 3.97910 4.15919 4.29270 4.37148 4.45160 4.47877 4.58811 4.61679 4.77697 4.81708 4.84960 4.91175 4.91999 5.00043 5.10032 5.10573 5.14180 5.18548 5.24169 5.25195 5.25855 5.32402 5.33435 5.46731 5.57692 5.57810 5.66722 5.86181 5.92379 6.09487 6.13360 6.71577 7.28720 8.82391 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.015722 B = 0.002942 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.561804 B = 9514.090402 C =10586.308461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.067 4.067 3 C -0.138 4.138 4 C -0.151 4.151 5 C -0.111 4.111 6 C 0.101 3.899 7 N -1.103 6.103 8 S 2.726 3.274 9 O -0.983 6.983 10 O -0.987 6.987 11 C -0.701 4.701 12 C -0.020 4.020 13 C -0.154 4.154 14 C -0.003 4.003 15 C 0.048 3.952 16 C -0.533 4.533 17 H 0.053 0.947 18 C 0.010 3.990 19 N -0.925 5.925 20 Si 0.964 3.036 21 H -0.268 1.268 22 H -0.275 1.275 23 H -0.275 1.275 24 C -0.156 4.156 25 C -0.019 4.019 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.429 0.571 40 H 0.156 0.844 41 H 0.130 0.870 42 H 0.014 0.986 43 H 0.013 0.987 44 H 0.267 0.733 45 H 0.129 0.871 46 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.920 24.071 7.519 25.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.068 4.068 3 C -0.196 4.196 4 C -0.209 4.209 5 C -0.150 4.150 6 C -0.025 4.025 7 N -0.866 5.866 8 S 2.816 3.184 9 O -0.973 6.973 10 O -0.977 6.977 11 C -0.787 4.787 12 C -0.039 4.039 13 C -0.173 4.173 14 C -0.003 4.003 15 C 0.011 3.989 16 C -0.570 4.570 17 H 0.071 0.929 18 C -0.189 4.189 19 N -0.565 5.565 20 Si 0.788 3.212 21 H -0.192 1.192 22 H -0.200 1.200 23 H -0.200 1.200 24 C -0.175 4.175 25 C -0.038 4.038 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.266 0.734 40 H 0.173 0.827 41 H 0.148 0.852 42 H 0.032 0.968 43 H 0.031 0.969 44 H 0.076 0.924 45 H 0.147 0.853 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -1.486 23.746 8.021 25.109 hybrid contribution 0.434 -1.461 -0.795 1.719 sum -1.051 22.285 7.226 23.451 Atomic orbital electron populations 1.22023 0.94531 1.02115 1.02244 1.20515 0.95787 0.95947 0.94519 1.21841 1.01147 0.94481 1.02115 1.22017 1.01276 1.00369 0.97210 1.21825 1.01843 0.92665 0.98699 1.21737 1.00015 0.94630 0.86076 1.55208 1.53315 1.38184 1.39907 1.00735 0.72847 0.72519 0.72338 1.93533 1.31221 1.85702 1.86867 1.93537 1.74762 1.82146 1.47245 1.30796 1.06028 1.22266 1.19655 1.21034 0.97017 0.95242 0.90594 1.21300 0.97580 0.97652 1.00738 1.20817 0.92985 0.91537 0.95006 1.18266 0.96489 0.92045 0.92073 1.21313 1.34871 0.94781 1.06075 0.92873 1.25856 0.95459 1.02898 0.94723 1.70057 1.41841 1.32503 1.12052 0.85414 0.78383 0.78889 0.78491 1.19243 1.20009 1.20045 1.21305 1.01050 1.00116 0.94996 1.21022 0.94179 0.91800 0.96805 0.92120 0.92273 0.92591 0.92338 0.92426 0.92178 0.92709 0.92386 0.92360 0.90208 0.90115 0.91054 0.90082 0.73393 0.82675 0.85187 0.96770 0.96877 0.92370 0.85306 0.82723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.12 71.98 0.58 -1.26 16 2 C -0.07 -0.77 0.80 -52.18 -0.04 -0.81 16 3 C -0.14 -1.34 8.47 71.98 0.61 -0.73 16 4 C -0.15 -1.98 8.12 71.98 0.58 -1.39 16 5 C -0.11 -1.27 4.41 30.59 0.13 -1.13 16 6 C 0.10 1.55 5.52 86.38 0.48 2.03 16 7 N -1.10 -18.46 6.00 -187.49 -1.12 -19.58 16 8 S 2.73 68.32 5.74 -56.49 -0.32 68.00 16 9 O -0.98 -29.21 16.75 -128.00 -2.14 -31.35 16 10 O -0.99 -29.31 17.28 -128.00 -2.21 -31.53 16 11 C -0.70 -20.60 5.95 22.27 0.13 -20.47 16 12 C -0.02 -0.61 9.52 22.27 0.21 -0.40 16 13 C -0.15 -5.67 9.70 22.27 0.22 -5.45 16 14 C 0.00 -0.13 5.07 -19.87 -0.10 -0.23 16 15 C 0.05 2.46 5.10 29.10 0.15 2.61 16 16 C -0.53 -29.67 9.09 25.60 0.23 -29.44 16 17 H 0.05 2.96 7.74 -2.91 -0.02 2.93 16 18 C 0.01 0.54 5.46 84.65 0.46 1.00 16 19 N -0.93 -54.12 13.29 21.45 0.28 -53.84 16 20 Si 0.96 43.66 29.54 68.60 2.03 45.68 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 22 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 23 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 24 C -0.16 -5.81 9.70 22.27 0.22 -5.59 16 25 C -0.02 -0.59 9.52 22.27 0.21 -0.38 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.67 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.06 0.75 6.43 -2.39 -0.02 0.73 16 29 H 0.06 0.53 8.14 -2.38 -0.02 0.52 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 32 H 0.05 0.79 6.43 -2.39 -0.02 0.78 16 33 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.08 0.80 8.14 -2.39 -0.02 0.79 16 36 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 37 H 0.07 1.12 6.43 -2.38 -0.02 1.10 16 38 H 0.08 1.31 6.04 -2.39 -0.01 1.29 16 39 H 0.43 5.08 8.65 -96.74 -0.84 4.25 16 40 H 0.16 3.91 7.61 -2.91 -0.02 3.88 16 41 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 42 H 0.01 0.76 8.08 -2.39 -0.02 0.74 16 43 H 0.01 0.70 8.09 -2.38 -0.02 0.68 16 44 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 45 H 0.13 4.65 8.06 -2.91 -0.02 4.62 16 46 H 0.16 3.99 7.62 -2.91 -0.02 3.97 16 Total: -1.00 -69.62 385.30 0.71 -68.90 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 0.13 Total: 15.36 kcal Atomic # 6 Polarization: -65.73 SS G_CDS: 4.08 Total: -61.65 kcal Atomic # 7 Polarization: -72.58 SS G_CDS: -0.84 Total: -73.42 kcal Atomic # 8 Polarization: -58.52 SS G_CDS: -4.36 Total: -62.88 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: 68.32 SS G_CDS: -0.32 Total: 68.00 kcal Total: -69.62 0.71 -68.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884933435.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.762 kcal (2) G-P(sol) polarization free energy of solvation -69.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds