Wall clock time and date at job start Tue Mar 31 2020 15:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.52992 * 109.47482 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.46906 * 55.00224 * 4 3 2 6 6 C 1.52998 * 109.47705 * 174.99884 * 4 3 2 7 7 N 1.46497 * 109.47408 * 295.00294 * 4 3 2 8 8 C 1.46502 * 119.99746 * 299.99849 * 7 4 3 9 9 S 1.65597 * 120.00252 * 119.99510 * 7 4 3 10 10 O 1.42101 * 106.40138 * 203.54070 * 9 7 4 11 11 O 1.42100 * 106.40366 * 336.46517 * 9 7 4 12 12 C 1.76199 * 107.21811 * 90.00532 * 9 7 4 13 13 C 1.38234 * 119.99675 * 269.72560 * 12 9 7 14 14 C 1.38237 * 120.00108 * 179.74122 * 13 12 9 15 15 C 1.38244 * 119.99779 * 0.53388 * 14 13 12 16 16 C 1.50692 * 119.99995 * 179.76569 * 15 14 13 17 17 C 1.50707 * 109.47117 * 269.97550 * 16 15 14 18 18 H 1.07997 * 119.99756 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99701 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00097 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99574 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47052 * 90.00137 * 21 19 17 23 23 H 1.48500 * 109.46812 * 209.99907 * 21 19 17 24 24 H 1.48494 * 109.47156 * 330.00052 * 21 19 17 25 25 C 1.38237 * 119.99896 * 359.74147 * 15 14 13 26 26 C 1.38235 * 119.99823 * 359.97438 * 25 15 14 27 27 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 29 29 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 32 32 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 33 33 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 34 34 H 1.09000 * 109.47812 * 179.97438 * 6 4 3 35 35 H 1.09001 * 109.46974 * 300.00556 * 6 4 3 36 36 H 1.09000 * 109.46929 * 59.99736 * 6 4 3 37 37 H 1.09004 * 109.47241 * 89.99933 * 8 7 4 38 38 H 1.09006 * 109.47040 * 209.99773 * 8 7 4 39 39 H 1.09001 * 109.47323 * 329.99525 * 8 7 4 40 40 H 1.08005 * 120.00114 * 359.97438 * 13 12 9 41 41 H 1.08001 * 120.00479 * 180.29468 * 14 13 12 42 42 H 1.09004 * 109.47600 * 29.97497 * 16 15 14 43 43 H 1.08998 * 109.47435 * 149.97513 * 16 15 14 44 44 H 0.97006 * 120.00105 * 179.97438 * 20 19 17 45 45 H 1.07993 * 119.99730 * 180.02562 * 25 15 14 46 46 H 1.07996 * 120.00103 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9329 0.8533 -0.8427 6 6 4.0799 2.8796 -0.1264 7 7 4.0589 0.8587 1.2508 8 6 3.7055 1.4730 2.5330 9 16 5.0109 -0.4958 1.2161 10 8 4.8639 -1.1221 2.4832 11 8 4.7304 -1.1522 -0.0126 12 6 6.6849 0.0456 1.1202 13 6 7.2794 0.2382 -0.1129 14 6 8.5910 0.6681 -0.1883 15 6 9.3117 0.8949 0.9695 16 6 10.7432 1.3585 0.8873 17 6 11.6578 0.1611 0.8530 18 1 11.2438 -0.8357 0.8869 19 6 13.0231 0.3385 0.7784 20 7 13.5272 1.5525 0.7367 21 14 14.1568 -1.1456 0.7366 22 1 14.3830 -1.5561 -0.6725 23 1 15.4558 -0.7939 1.3645 24 1 13.5327 -2.2663 1.4846 25 6 8.7190 0.6968 2.2025 26 6 7.4055 0.2725 2.2778 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 5.1699 2.8797 -0.1264 35 1 3.7161 3.3140 -1.0575 36 1 3.7169 3.4689 0.7156 37 1 2.7788 1.0343 2.9030 38 1 4.5043 1.2959 3.2532 39 1 3.5705 2.5460 2.3968 40 1 6.7179 0.0564 -1.0174 41 1 9.0540 0.8232 -1.1516 42 1 10.8827 1.9483 -0.0187 43 1 10.9777 1.9699 1.7586 44 1 14.4878 1.6773 0.6845 45 1 9.2819 0.8743 3.1069 46 1 6.9426 0.1174 3.2411 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884937051.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:52 Heat of formation + Delta-G solvation = -73.478536 kcal Electronic energy + Delta-G solvation = -25978.377793 eV Core-core repulsion = 22380.112573 eV Total energy + Delta-G solvation = -3598.265221 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -38.79775 -38.24944 -37.15916 -35.74016 -34.07257 -33.67589 -31.55731 -31.13335 -30.57148 -27.43902 -26.98521 -26.48064 -23.72151 -22.34578 -22.06136 -21.04872 -20.64723 -18.93793 -17.99673 -17.42433 -16.45526 -16.20154 -15.39155 -15.16909 -14.96658 -14.48734 -14.38965 -14.31409 -14.19442 -13.72859 -13.28827 -13.12757 -13.02111 -12.86419 -12.67231 -12.65166 -12.23272 -12.18861 -11.97918 -11.92780 -11.71110 -11.70407 -11.49369 -11.48272 -11.03244 -10.94399 -10.91908 -10.87020 -10.80743 -10.50975 -10.48532 -9.75769 -9.66639 -9.16286 -8.59271 -8.54424 -8.37380 -6.17838 -4.22805 0.47926 1.33662 1.79300 2.98483 3.23865 3.30401 3.34928 3.79944 4.09058 4.35119 4.35972 4.39984 4.74394 4.76434 4.83923 5.03929 5.11711 5.16187 5.21995 5.22896 5.31198 5.35703 5.39169 5.43951 5.52169 5.61353 5.64594 5.69149 5.72118 5.80874 5.85116 5.91049 5.92259 6.02686 6.10506 6.19065 6.25076 6.32818 6.45233 6.55974 6.83636 6.90311 7.28712 7.42915 7.58422 7.77284 8.12638 8.81969 9.42175 10.92179 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.026441 B = 0.002838 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.703283 B = 9864.130585 C =10088.005030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.130 4.130 3 C -0.123 4.123 4 C 0.142 3.858 5 H 0.101 0.899 6 C -0.166 4.166 7 N -0.996 5.996 8 C 0.094 3.906 9 S 2.692 3.308 10 O -0.963 6.963 11 O -0.961 6.961 12 C -0.704 4.704 13 C -0.023 4.023 14 C -0.145 4.145 15 C 0.026 3.974 16 C 0.040 3.960 17 C -0.517 4.517 18 H 0.059 0.941 19 C 0.061 3.939 20 N -0.892 5.892 21 Si 0.899 3.101 22 H -0.278 1.278 23 H -0.285 1.285 24 H -0.272 1.272 25 C -0.145 4.145 26 C -0.024 4.024 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.128 0.872 41 H 0.128 0.872 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.264 0.736 45 H 0.128 0.872 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.383 3.309 -0.210 23.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.167 4.167 3 C -0.163 4.163 4 C 0.036 3.964 5 H 0.119 0.881 6 C -0.224 4.224 7 N -0.834 5.834 8 C -0.052 4.052 9 S 2.786 3.214 10 O -0.954 6.954 11 O -0.952 6.952 12 C -0.793 4.793 13 C -0.043 4.043 14 C -0.164 4.164 15 C 0.026 3.974 16 C 0.003 3.997 17 C -0.555 4.555 18 H 0.077 0.923 19 C -0.142 4.142 20 N -0.530 5.530 21 Si 0.726 3.274 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.164 4.164 26 C -0.044 4.044 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.146 0.854 41 H 0.146 0.854 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.074 0.926 45 H 0.146 0.854 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -23.534 2.553 -0.170 23.672 hybrid contribution 1.442 -0.223 -0.004 1.460 sum -22.091 2.330 -0.174 22.214 Atomic orbital electron populations 1.21759 0.95868 1.01612 1.01536 1.21563 0.95721 0.96776 1.02672 1.21932 0.94297 0.97407 1.02628 1.20996 0.94533 0.95284 0.85546 0.88107 1.22186 1.02228 0.95749 1.02261 1.57569 1.65412 1.48528 1.11850 1.21422 1.01187 0.99182 0.83388 1.01834 0.73457 0.72818 0.73333 1.93549 1.86358 1.72759 1.42709 1.93541 1.84514 1.71488 1.45626 1.30427 1.24648 1.24287 0.99965 1.20753 0.95489 0.92842 0.95200 1.21244 0.93838 1.02112 0.99220 1.21109 0.97278 0.86991 0.92071 1.18534 0.85023 0.97199 0.98964 1.20972 0.90618 0.92131 1.51811 0.92299 1.25004 0.98202 0.96122 0.94824 1.69946 1.12726 1.20600 1.49715 0.86479 0.79932 0.82610 0.78395 1.20436 1.21018 1.19691 1.21240 0.94468 1.02192 0.98500 1.20759 0.94642 0.92844 0.96140 0.92927 0.92785 0.92803 0.92398 0.91201 0.90808 0.91354 0.91678 0.91435 0.92003 0.92476 0.91006 0.90789 0.85384 0.85371 0.94734 0.94730 0.92628 0.85374 0.85423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 2 C -0.13 -1.18 5.82 -26.73 -0.16 -1.33 16 3 C -0.12 -0.95 4.64 -26.74 -0.12 -1.07 16 4 C 0.14 1.30 2.63 -67.94 -0.18 1.12 16 5 H 0.10 1.00 6.91 -51.93 -0.36 0.64 16 6 C -0.17 -1.30 9.17 37.16 0.34 -0.96 16 7 N -1.00 -10.58 2.52 -114.61 -0.29 -10.87 16 8 C 0.09 0.80 9.25 59.85 0.55 1.35 16 9 S 2.69 38.70 5.64 -107.50 -0.61 38.10 16 10 O -0.96 -15.93 16.36 -57.17 -0.94 -16.87 16 11 O -0.96 -15.42 15.84 -57.17 -0.91 -16.33 16 12 C -0.70 -11.30 5.97 -39.58 -0.24 -11.53 16 13 C -0.02 -0.38 9.52 -39.58 -0.38 -0.76 16 14 C -0.15 -2.70 9.70 -39.58 -0.38 -3.09 16 15 C 0.03 0.54 5.07 -104.62 -0.53 0.01 16 16 C 0.04 0.97 5.10 -29.04 -0.15 0.82 16 17 C -0.52 -14.06 9.09 -34.44 -0.31 -14.38 16 18 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -25.54 13.29 55.43 0.74 -24.80 16 21 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 25 C -0.15 -2.71 9.70 -39.58 -0.38 -3.10 16 26 C -0.02 -0.40 9.52 -39.58 -0.38 -0.78 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.60 7.75 -51.93 -0.40 0.20 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.47 7.51 -51.93 -0.39 0.08 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.43 6.66 -51.93 -0.35 0.08 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.62 7.79 -51.93 -0.40 0.22 16 39 H 0.07 0.48 6.43 -51.93 -0.33 0.15 16 40 H 0.13 1.80 7.61 -52.48 -0.40 1.40 16 41 H 0.13 2.26 8.06 -52.49 -0.42 1.84 16 42 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 43 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 44 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.13 2.27 8.06 -52.49 -0.42 1.85 16 46 H 0.13 1.82 7.62 -52.49 -0.40 1.42 16 LS Contribution 386.84 15.07 5.83 5.83 Total: -1.00 -31.89 386.84 -10.88 -42.77 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -7.64 Total: -1.10 kcal Atomic # 6 Polarization: -30.83 SS G_CDS: -2.04 Total: -32.87 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.45 Total: -35.67 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -1.84 Total: -33.20 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 38.70 SS G_CDS: -0.61 Total: 38.10 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.89 -10.88 -42.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884937051.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.712 kcal (2) G-P(sol) polarization free energy of solvation -31.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds