Wall clock time and date at job start Tue Mar 31 2020 15:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.52992 * 109.47482 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.46906 * 55.00224 * 4 3 2 6 6 C 1.52998 * 109.47705 * 174.99884 * 4 3 2 7 7 N 1.46497 * 109.47408 * 295.00294 * 4 3 2 8 8 C 1.46502 * 119.99746 * 299.99849 * 7 4 3 9 9 S 1.65597 * 120.00252 * 119.99510 * 7 4 3 10 10 O 1.42101 * 106.40138 * 203.54070 * 9 7 4 11 11 O 1.42100 * 106.40366 * 336.46517 * 9 7 4 12 12 C 1.76199 * 107.21811 * 90.00532 * 9 7 4 13 13 C 1.38234 * 119.99675 * 269.72560 * 12 9 7 14 14 C 1.38237 * 120.00108 * 179.74122 * 13 12 9 15 15 C 1.38244 * 119.99779 * 0.53388 * 14 13 12 16 16 C 1.50692 * 119.99995 * 179.76569 * 15 14 13 17 17 C 1.50707 * 109.47117 * 269.97550 * 16 15 14 18 18 H 1.07997 * 119.99756 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99701 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00097 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99574 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47052 * 90.00137 * 21 19 17 23 23 H 1.48500 * 109.46812 * 209.99907 * 21 19 17 24 24 H 1.48494 * 109.47156 * 330.00052 * 21 19 17 25 25 C 1.38237 * 119.99896 * 359.74147 * 15 14 13 26 26 C 1.38235 * 119.99823 * 359.97438 * 25 15 14 27 27 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 29 29 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 32 32 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 33 33 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 34 34 H 1.09000 * 109.47812 * 179.97438 * 6 4 3 35 35 H 1.09001 * 109.46974 * 300.00556 * 6 4 3 36 36 H 1.09000 * 109.46929 * 59.99736 * 6 4 3 37 37 H 1.09004 * 109.47241 * 89.99933 * 8 7 4 38 38 H 1.09006 * 109.47040 * 209.99773 * 8 7 4 39 39 H 1.09001 * 109.47323 * 329.99525 * 8 7 4 40 40 H 1.08005 * 120.00114 * 359.97438 * 13 12 9 41 41 H 1.08001 * 120.00479 * 180.29468 * 14 13 12 42 42 H 1.09004 * 109.47600 * 29.97497 * 16 15 14 43 43 H 1.08998 * 109.47435 * 149.97513 * 16 15 14 44 44 H 0.97006 * 120.00105 * 179.97438 * 20 19 17 45 45 H 1.07993 * 119.99730 * 180.02562 * 25 15 14 46 46 H 1.07996 * 120.00103 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9329 0.8533 -0.8427 6 6 4.0799 2.8796 -0.1264 7 7 4.0589 0.8587 1.2508 8 6 3.7055 1.4730 2.5330 9 16 5.0109 -0.4958 1.2161 10 8 4.8639 -1.1221 2.4832 11 8 4.7304 -1.1522 -0.0126 12 6 6.6849 0.0456 1.1202 13 6 7.2794 0.2382 -0.1129 14 6 8.5910 0.6681 -0.1883 15 6 9.3117 0.8949 0.9695 16 6 10.7432 1.3585 0.8873 17 6 11.6578 0.1611 0.8530 18 1 11.2438 -0.8357 0.8869 19 6 13.0231 0.3385 0.7784 20 7 13.5272 1.5525 0.7367 21 14 14.1568 -1.1456 0.7366 22 1 14.3830 -1.5561 -0.6725 23 1 15.4558 -0.7939 1.3645 24 1 13.5327 -2.2663 1.4846 25 6 8.7190 0.6968 2.2025 26 6 7.4055 0.2725 2.2778 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 5.1699 2.8797 -0.1264 35 1 3.7161 3.3140 -1.0575 36 1 3.7169 3.4689 0.7156 37 1 2.7788 1.0343 2.9030 38 1 4.5043 1.2959 3.2532 39 1 3.5705 2.5460 2.3968 40 1 6.7179 0.0564 -1.0174 41 1 9.0540 0.8232 -1.1516 42 1 10.8827 1.9483 -0.0187 43 1 10.9777 1.9699 1.7586 44 1 14.4878 1.6773 0.6845 45 1 9.2819 0.8743 3.1069 46 1 6.9426 0.1174 3.2411 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884937051.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:51 Heat of formation + Delta-G solvation = -91.404700 kcal Electronic energy + Delta-G solvation = -25979.155130 eV Core-core repulsion = 22380.112573 eV Total energy + Delta-G solvation = -3599.042557 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.24728 -39.00172 -38.36365 -36.97419 -35.61167 -34.75439 -33.32899 -31.99902 -31.79247 -29.25749 -27.60560 -27.18467 -25.59554 -23.74735 -22.77418 -22.45822 -21.56542 -19.96842 -19.07034 -18.65708 -18.51390 -17.22226 -16.87887 -16.36457 -16.04535 -15.93463 -15.60981 -15.26608 -15.01782 -14.88492 -14.63480 -14.48249 -13.97288 -13.89499 -13.77376 -13.50958 -13.42631 -13.40701 -13.35423 -13.19749 -12.96446 -12.72313 -12.69603 -12.67356 -12.43671 -12.23935 -12.13052 -12.05864 -11.70777 -11.63391 -11.57816 -11.44831 -11.41387 -10.66553 -10.06387 -9.98404 -9.87885 -8.28316 -6.41047 -0.66864 -0.07730 0.37619 1.37458 1.37685 1.49270 1.94164 2.33881 2.57057 2.77778 3.04269 3.23009 3.66282 3.84114 3.94470 4.05282 4.12358 4.13968 4.16837 4.37201 4.43802 4.45711 4.53241 4.68766 4.74583 4.78380 4.80060 4.86506 4.88685 4.90330 4.99760 5.03083 5.09095 5.11204 5.22026 5.23029 5.24683 5.31319 5.31542 5.41520 5.46379 5.55325 5.65815 5.73696 5.84437 5.90704 6.08600 6.70556 7.28003 8.81735 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.026441 B = 0.002838 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.703283 B = 9864.130585 C =10088.005030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.135 4.135 3 C -0.118 4.118 4 C 0.135 3.865 5 H 0.091 0.909 6 C -0.163 4.163 7 N -0.986 5.986 8 C 0.082 3.918 9 S 2.709 3.291 10 O -0.983 6.983 11 O -0.978 6.978 12 C -0.702 4.702 13 C -0.019 4.019 14 C -0.153 4.153 15 C -0.003 4.003 16 C 0.049 3.951 17 C -0.534 4.534 18 H 0.053 0.947 19 C 0.010 3.990 20 N -0.925 5.925 21 Si 0.964 3.036 22 H -0.271 1.271 23 H -0.277 1.277 24 H -0.269 1.269 25 C -0.154 4.154 26 C -0.021 4.021 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.049 0.951 30 H 0.041 0.959 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.048 0.952 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.099 0.901 40 H 0.153 0.847 41 H 0.130 0.870 42 H 0.014 0.986 43 H 0.014 0.986 44 H 0.268 0.732 45 H 0.130 0.870 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.610 3.258 -0.170 25.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C -0.157 4.157 4 C 0.030 3.970 5 H 0.109 0.891 6 C -0.221 4.221 7 N -0.826 5.826 8 C -0.063 4.063 9 S 2.801 3.199 10 O -0.974 6.974 11 O -0.968 6.968 12 C -0.788 4.788 13 C -0.039 4.039 14 C -0.172 4.172 15 C -0.004 4.004 16 C 0.012 3.988 17 C -0.572 4.572 18 H 0.071 0.929 19 C -0.189 4.189 20 N -0.564 5.564 21 Si 0.788 3.212 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.193 1.193 25 C -0.173 4.173 26 C -0.040 4.040 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.067 0.933 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.117 0.883 40 H 0.171 0.829 41 H 0.148 0.852 42 H 0.032 0.968 43 H 0.032 0.968 44 H 0.077 0.923 45 H 0.148 0.852 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -25.741 2.504 -0.131 25.863 hybrid contribution 1.968 -0.170 -0.019 1.975 sum -23.773 2.334 -0.150 23.888 Atomic orbital electron populations 1.21742 0.94572 1.01735 1.02494 1.21603 0.96958 0.97529 1.01214 1.21924 0.92821 0.96678 1.04248 1.21226 0.95703 0.95758 0.84357 0.89105 1.22175 1.01191 0.94973 1.03796 1.57343 1.63959 1.47876 1.13458 1.21714 1.01631 1.00708 0.82200 1.01305 0.72831 0.73352 0.72429 1.93520 1.86365 1.73931 1.43543 1.93517 1.84402 1.72615 1.46297 1.30912 1.26025 1.22288 0.99604 1.20991 0.94585 0.91752 0.96524 1.21303 0.94790 1.02476 0.98646 1.20818 0.95747 0.89908 0.93898 1.18257 0.87637 0.96020 0.96876 1.21283 0.91574 0.92672 1.51655 0.92910 1.25860 0.99778 0.98931 0.94355 1.70051 1.13223 1.22575 1.50549 0.85464 0.77944 0.79095 0.78695 1.19627 1.20235 1.19309 1.21302 0.95560 1.02605 0.97808 1.21005 0.93649 0.91792 0.97593 0.92070 0.91692 0.93190 0.94057 0.92552 0.88919 0.89929 0.93276 0.89791 0.90644 0.91378 0.91147 0.88259 0.82915 0.85176 0.96792 0.96805 0.92346 0.85199 0.82912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.91 71.98 0.71 -1.15 16 2 C -0.14 -2.21 5.82 30.59 0.18 -2.03 16 3 C -0.12 -1.45 4.64 30.59 0.14 -1.31 16 4 C 0.13 2.13 2.63 44.99 0.12 2.25 16 5 H 0.09 1.64 6.91 -2.39 -0.02 1.62 16 6 C -0.16 -2.10 9.17 71.98 0.66 -1.44 16 7 N -0.99 -18.77 2.52 -516.52 -1.30 -20.08 16 8 C 0.08 1.17 9.25 127.77 1.18 2.35 16 9 S 2.71 73.80 5.64 -56.49 -0.32 73.48 16 10 O -0.98 -31.01 16.36 -128.00 -2.09 -33.10 16 11 O -0.98 -30.18 15.84 -128.00 -2.03 -32.20 16 12 C -0.70 -21.67 5.97 22.27 0.13 -21.53 16 13 C -0.02 -0.62 9.52 22.27 0.21 -0.41 16 14 C -0.15 -5.78 9.70 22.27 0.22 -5.57 16 15 C 0.00 -0.14 5.07 -19.87 -0.10 -0.25 16 16 C 0.05 2.52 5.10 29.10 0.15 2.67 16 17 C -0.53 -29.90 9.09 25.60 0.23 -29.67 16 18 H 0.05 2.95 7.74 -2.91 -0.02 2.92 16 19 C 0.01 0.55 5.46 84.66 0.46 1.01 16 20 N -0.92 -54.24 13.29 21.45 0.28 -53.95 16 21 Si 0.96 43.78 29.54 68.60 2.03 45.81 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 23 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 25 C -0.15 -5.82 9.70 22.27 0.22 -5.61 16 26 C -0.02 -0.68 9.52 22.27 0.21 -0.47 16 27 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.04 0.80 7.75 -2.39 -0.02 0.78 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.08 0.81 7.51 -2.39 -0.02 0.79 16 34 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.07 0.77 6.66 -2.39 -0.02 0.75 16 37 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.07 1.05 7.79 -2.38 -0.02 1.03 16 39 H 0.10 0.92 6.43 -2.39 -0.02 0.91 16 40 H 0.15 4.07 7.61 -2.91 -0.02 4.05 16 41 H 0.13 4.71 8.06 -2.91 -0.02 4.69 16 42 H 0.01 0.75 8.09 -2.39 -0.02 0.73 16 43 H 0.01 0.74 8.09 -2.39 -0.02 0.72 16 44 H 0.27 14.71 8.31 -92.70 -0.77 13.94 16 45 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 46 H 0.15 4.08 7.62 -2.91 -0.02 4.06 16 Total: -1.00 -69.44 386.84 2.23 -67.21 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 0.94 Total: 13.99 kcal Atomic # 6 Polarization: -65.87 SS G_CDS: 4.73 Total: -61.14 kcal Atomic # 7 Polarization: -73.01 SS G_CDS: -1.02 Total: -74.03 kcal Atomic # 8 Polarization: -61.18 SS G_CDS: -4.12 Total: -65.31 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: 73.80 SS G_CDS: -0.32 Total: 73.48 kcal Total: -69.44 2.23 -67.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884937051.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.197 kcal (2) G-P(sol) polarization free energy of solvation -69.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds