Wall clock time and date at job start Tue Mar 31 2020 15:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46642 * 2 1 4 4 C 1.52999 * 109.46937 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47417 * 305.00031 * 4 3 2 6 6 C 1.52995 * 109.47385 * 184.99962 * 4 3 2 7 7 N 1.46505 * 109.47199 * 64.99943 * 4 3 2 8 8 C 1.46508 * 119.99662 * 60.00036 * 7 4 3 9 9 S 1.65591 * 120.00225 * 240.00197 * 7 4 3 10 10 O 1.42101 * 106.40500 * 156.45747 * 9 7 4 11 11 O 1.42104 * 106.40278 * 23.54072 * 9 7 4 12 12 C 1.76195 * 107.22084 * 269.99904 * 9 7 4 13 13 C 1.38233 * 120.00186 * 89.99343 * 12 9 7 14 14 C 1.38234 * 120.00037 * 179.72636 * 13 12 9 15 15 C 1.38235 * 120.00220 * 0.28719 * 14 13 12 16 16 C 1.50700 * 120.00255 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.47288 * 89.99435 * 16 15 14 18 18 H 1.07997 * 119.99957 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99538 * 179.97438 * 17 16 15 20 20 N 1.31507 * 120.00471 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99744 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47118 * 90.00208 * 21 19 17 23 23 H 1.48501 * 109.47253 * 210.00387 * 21 19 17 24 24 H 1.48501 * 109.46801 * 330.00167 * 21 19 17 25 25 C 1.38237 * 119.99712 * 359.94731 * 15 14 13 26 26 C 1.38234 * 120.00033 * 0.02562 * 25 15 14 27 27 H 1.09004 * 109.47162 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47622 * 300.00224 * 1 2 3 29 29 H 1.09005 * 109.46925 * 60.00653 * 1 2 3 30 30 H 1.09001 * 109.47276 * 240.00114 * 2 1 3 31 31 H 1.08999 * 109.46597 * 119.99629 * 2 1 3 32 32 H 1.09001 * 109.47191 * 60.00063 * 3 2 1 33 33 H 1.08999 * 109.47583 * 299.99923 * 3 2 1 34 34 H 1.09003 * 109.46986 * 60.00069 * 6 4 3 35 35 H 1.09001 * 109.47643 * 180.02562 * 6 4 3 36 36 H 1.09001 * 109.46899 * 300.00386 * 6 4 3 37 37 H 1.09002 * 109.46986 * 270.00079 * 8 7 4 38 38 H 1.09000 * 109.47033 * 29.99953 * 8 7 4 39 39 H 1.08997 * 109.46882 * 150.00504 * 8 7 4 40 40 H 1.08002 * 120.00157 * 0.02562 * 13 12 9 41 41 H 1.07999 * 120.00009 * 180.25939 * 14 13 12 42 42 H 1.09005 * 109.47111 * 209.99797 * 16 15 14 43 43 H 1.09002 * 109.46493 * 329.99148 * 16 15 14 44 44 H 0.97001 * 120.00292 * 179.97438 * 20 19 17 45 45 H 1.08001 * 119.99643 * 180.02562 * 25 15 14 46 46 H 1.08003 * 119.99512 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9330 0.8533 0.8427 6 6 4.0799 2.8796 0.1264 7 7 4.0589 0.8587 -1.2509 8 6 3.7054 1.4731 -2.5331 9 16 5.0109 -0.4957 -1.2163 10 8 4.8638 -1.1221 -2.4833 11 8 4.7303 -1.1522 0.0124 12 6 6.6849 0.0456 -1.1203 13 6 7.2776 0.2437 0.1127 14 6 8.5927 0.6630 0.1880 15 6 9.3132 0.8899 -0.9697 16 6 10.7467 1.3475 -0.8875 17 6 11.6565 0.1465 -0.8565 18 1 11.2385 -0.8486 -0.8930 19 6 13.0225 0.3183 -0.7825 20 7 13.5315 1.5301 -0.7385 21 14 14.1504 -1.1703 -0.7448 22 1 14.5225 -1.5448 -2.1328 23 1 15.3771 -0.8426 0.0253 24 1 13.4480 -2.3071 -0.0967 25 6 8.7190 0.6965 -2.2027 26 6 7.4041 0.2766 -2.2780 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.7161 3.3140 1.0576 35 1 5.1699 2.8797 0.1264 36 1 3.7168 3.4689 -0.7157 37 1 2.7787 1.0344 -2.9030 38 1 3.5704 2.5461 -2.3968 39 1 4.5041 1.2959 -3.2533 40 1 6.7148 0.0662 1.0172 41 1 9.0571 0.8137 1.1513 42 1 10.9830 1.9600 -1.7577 43 1 10.8891 1.9348 0.0196 44 1 14.4925 1.6509 -0.6861 45 1 9.2821 0.8733 -3.1072 46 1 6.9400 0.1251 -3.2414 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884937052.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:55 Heat of formation + Delta-G solvation = -73.470904 kcal Electronic energy + Delta-G solvation = -25978.677080 eV Core-core repulsion = 22380.412190 eV Total energy + Delta-G solvation = -3598.264890 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -38.79888 -38.24893 -37.15792 -35.73933 -34.07235 -33.67616 -31.55774 -31.13380 -30.57211 -27.43982 -26.98533 -26.48106 -23.72136 -22.34614 -22.06138 -21.04889 -20.64800 -18.93816 -17.99742 -17.42350 -16.45533 -16.20160 -15.39172 -15.16828 -14.96632 -14.48813 -14.38858 -14.31490 -14.19431 -13.72890 -13.28858 -13.12818 -13.02102 -12.86481 -12.67270 -12.65180 -12.23369 -12.18894 -11.97897 -11.92752 -11.71065 -11.70378 -11.49366 -11.48284 -11.03163 -10.94394 -10.91892 -10.86973 -10.80788 -10.50820 -10.48632 -9.76101 -9.66459 -9.16390 -8.59306 -8.54452 -8.37358 -6.17798 -4.22787 0.47950 1.33592 1.79237 2.98515 3.23910 3.30442 3.34941 3.80035 4.09012 4.35115 4.35970 4.40001 4.74392 4.76390 4.83909 5.03902 5.11665 5.16181 5.21927 5.22745 5.31155 5.35640 5.39133 5.43918 5.52117 5.61314 5.64561 5.69104 5.72054 5.80849 5.85095 5.91006 5.92239 6.02617 6.10485 6.19036 6.25054 6.32722 6.45166 6.55919 6.83594 6.90308 7.28670 7.42901 7.58408 7.77324 8.12692 8.82008 9.42215 10.92219 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.026440 B = 0.002838 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.749164 B = 9863.018271 C =10087.012050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.130 4.130 3 C -0.123 4.123 4 C 0.142 3.858 5 H 0.101 0.899 6 C -0.166 4.166 7 N -0.996 5.996 8 C 0.094 3.906 9 S 2.691 3.309 10 O -0.963 6.963 11 O -0.961 6.961 12 C -0.704 4.704 13 C -0.023 4.023 14 C -0.145 4.145 15 C 0.026 3.974 16 C 0.040 3.960 17 C -0.517 4.517 18 H 0.059 0.941 19 C 0.061 3.939 20 N -0.892 5.892 21 Si 0.898 3.102 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 C -0.145 4.145 26 C -0.024 4.024 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.128 0.872 41 H 0.128 0.872 42 H 0.034 0.966 43 H 0.035 0.965 44 H 0.264 0.736 45 H 0.128 0.872 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.389 3.373 0.221 23.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.167 4.167 3 C -0.163 4.163 4 C 0.036 3.964 5 H 0.119 0.881 6 C -0.224 4.224 7 N -0.834 5.834 8 C -0.052 4.052 9 S 2.786 3.214 10 O -0.954 6.954 11 O -0.952 6.952 12 C -0.793 4.793 13 C -0.043 4.043 14 C -0.164 4.164 15 C 0.025 3.975 16 C 0.003 3.997 17 C -0.555 4.555 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.530 5.530 21 Si 0.726 3.274 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.164 4.164 26 C -0.044 4.044 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.146 0.854 41 H 0.146 0.854 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.074 0.926 45 H 0.146 0.854 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -23.539 2.616 0.190 23.685 hybrid contribution 1.440 -0.225 -0.019 1.457 sum -22.100 2.391 0.171 22.229 Atomic orbital electron populations 1.21761 0.95868 1.01612 1.01534 1.21564 0.95720 0.96776 1.02672 1.21933 0.94296 0.97407 1.02627 1.20998 0.94536 0.95282 0.85544 0.88107 1.22186 1.02227 0.95751 1.02262 1.57574 1.65418 1.48529 1.11851 1.21421 1.01187 0.99181 0.83388 1.01838 0.73453 0.72823 0.73336 1.93549 1.86356 1.72756 1.42711 1.93542 1.84512 1.71484 1.45629 1.30430 1.24702 1.24208 0.99962 1.20751 0.95493 0.92853 0.95196 1.21240 0.93767 1.02155 0.99228 1.21110 0.97334 0.86945 0.92072 1.18535 0.84988 0.97228 0.98962 1.20970 0.90628 0.92124 1.51812 0.92297 1.25003 0.98185 0.96136 0.94821 1.69942 1.12566 1.20764 1.49717 0.86481 0.80025 0.82656 0.78264 1.20439 1.21017 1.19685 1.21242 0.94431 1.02230 0.98498 1.20760 0.94656 0.92849 0.96133 0.92803 0.92785 0.92928 0.92397 0.91200 0.90807 0.91353 0.91434 0.91680 0.92001 0.92476 0.90789 0.91007 0.85392 0.85369 0.94740 0.94726 0.92626 0.85372 0.85427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 2 C -0.13 -1.18 5.82 -26.73 -0.16 -1.33 16 3 C -0.12 -0.95 4.64 -26.73 -0.12 -1.07 16 4 C 0.14 1.30 2.63 -67.93 -0.18 1.12 16 5 H 0.10 1.00 6.91 -51.93 -0.36 0.64 16 6 C -0.17 -1.30 9.17 37.16 0.34 -0.96 16 7 N -1.00 -10.58 2.52 -114.60 -0.29 -10.87 16 8 C 0.09 0.80 9.25 59.85 0.55 1.35 16 9 S 2.69 38.71 5.64 -107.50 -0.61 38.11 16 10 O -0.96 -15.94 16.36 -57.17 -0.94 -16.87 16 11 O -0.96 -15.43 15.85 -57.17 -0.91 -16.34 16 12 C -0.70 -11.29 5.97 -39.58 -0.24 -11.53 16 13 C -0.02 -0.39 9.52 -39.58 -0.38 -0.76 16 14 C -0.14 -2.70 9.70 -39.58 -0.38 -3.09 16 15 C 0.03 0.53 5.07 -104.62 -0.53 0.00 16 16 C 0.04 0.97 5.10 -29.04 -0.15 0.82 16 17 C -0.52 -14.07 9.09 -34.44 -0.31 -14.38 16 18 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 20 N -0.89 -25.54 13.29 55.43 0.74 -24.81 16 21 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 25 C -0.15 -2.71 9.70 -39.58 -0.38 -3.10 16 26 C -0.02 -0.41 9.52 -39.58 -0.38 -0.78 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.60 7.75 -51.93 -0.40 0.20 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.47 7.51 -51.93 -0.39 0.08 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.43 6.66 -51.93 -0.35 0.08 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.48 6.43 -51.93 -0.33 0.15 16 39 H 0.07 0.62 7.79 -51.93 -0.40 0.22 16 40 H 0.13 1.80 7.62 -52.49 -0.40 1.40 16 41 H 0.13 2.26 8.06 -52.49 -0.42 1.84 16 42 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 43 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 44 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.13 2.27 8.06 -52.49 -0.42 1.85 16 46 H 0.13 1.81 7.62 -52.48 -0.40 1.41 16 LS Contribution 386.86 15.07 5.83 5.83 Total: -1.00 -31.90 386.86 -10.88 -42.78 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -7.64 Total: -1.11 kcal Atomic # 6 Polarization: -30.82 SS G_CDS: -2.04 Total: -32.86 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.45 Total: -35.67 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -1.84 Total: -33.21 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 38.71 SS G_CDS: -0.61 Total: 38.11 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.90 -10.88 -42.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884937052.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.695 kcal (2) G-P(sol) polarization free energy of solvation -31.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds