Wall clock time and date at job start Tue Mar 31 2020 15:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46642 * 2 1 4 4 C 1.52999 * 109.46937 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47417 * 305.00031 * 4 3 2 6 6 C 1.52995 * 109.47385 * 184.99962 * 4 3 2 7 7 N 1.46505 * 109.47199 * 64.99943 * 4 3 2 8 8 C 1.46508 * 119.99662 * 60.00036 * 7 4 3 9 9 S 1.65591 * 120.00225 * 240.00197 * 7 4 3 10 10 O 1.42101 * 106.40500 * 156.45747 * 9 7 4 11 11 O 1.42104 * 106.40278 * 23.54072 * 9 7 4 12 12 C 1.76195 * 107.22084 * 269.99904 * 9 7 4 13 13 C 1.38233 * 120.00186 * 89.99343 * 12 9 7 14 14 C 1.38234 * 120.00037 * 179.72636 * 13 12 9 15 15 C 1.38235 * 120.00220 * 0.28719 * 14 13 12 16 16 C 1.50700 * 120.00255 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.47288 * 89.99435 * 16 15 14 18 18 H 1.07997 * 119.99957 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99538 * 179.97438 * 17 16 15 20 20 N 1.31507 * 120.00471 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99744 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47118 * 90.00208 * 21 19 17 23 23 H 1.48501 * 109.47253 * 210.00387 * 21 19 17 24 24 H 1.48501 * 109.46801 * 330.00167 * 21 19 17 25 25 C 1.38237 * 119.99712 * 359.94731 * 15 14 13 26 26 C 1.38234 * 120.00033 * 0.02562 * 25 15 14 27 27 H 1.09004 * 109.47162 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47622 * 300.00224 * 1 2 3 29 29 H 1.09005 * 109.46925 * 60.00653 * 1 2 3 30 30 H 1.09001 * 109.47276 * 240.00114 * 2 1 3 31 31 H 1.08999 * 109.46597 * 119.99629 * 2 1 3 32 32 H 1.09001 * 109.47191 * 60.00063 * 3 2 1 33 33 H 1.08999 * 109.47583 * 299.99923 * 3 2 1 34 34 H 1.09003 * 109.46986 * 60.00069 * 6 4 3 35 35 H 1.09001 * 109.47643 * 180.02562 * 6 4 3 36 36 H 1.09001 * 109.46899 * 300.00386 * 6 4 3 37 37 H 1.09002 * 109.46986 * 270.00079 * 8 7 4 38 38 H 1.09000 * 109.47033 * 29.99953 * 8 7 4 39 39 H 1.08997 * 109.46882 * 150.00504 * 8 7 4 40 40 H 1.08002 * 120.00157 * 0.02562 * 13 12 9 41 41 H 1.07999 * 120.00009 * 180.25939 * 14 13 12 42 42 H 1.09005 * 109.47111 * 209.99797 * 16 15 14 43 43 H 1.09002 * 109.46493 * 329.99148 * 16 15 14 44 44 H 0.97001 * 120.00292 * 179.97438 * 20 19 17 45 45 H 1.08001 * 119.99643 * 180.02562 * 25 15 14 46 46 H 1.08003 * 119.99512 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9330 0.8533 0.8427 6 6 4.0799 2.8796 0.1264 7 7 4.0589 0.8587 -1.2509 8 6 3.7054 1.4731 -2.5331 9 16 5.0109 -0.4957 -1.2163 10 8 4.8638 -1.1221 -2.4833 11 8 4.7303 -1.1522 0.0124 12 6 6.6849 0.0456 -1.1203 13 6 7.2776 0.2437 0.1127 14 6 8.5927 0.6630 0.1880 15 6 9.3132 0.8899 -0.9697 16 6 10.7467 1.3475 -0.8875 17 6 11.6565 0.1465 -0.8565 18 1 11.2385 -0.8486 -0.8930 19 6 13.0225 0.3183 -0.7825 20 7 13.5315 1.5301 -0.7385 21 14 14.1504 -1.1703 -0.7448 22 1 14.5225 -1.5448 -2.1328 23 1 15.3771 -0.8426 0.0253 24 1 13.4480 -2.3071 -0.0967 25 6 8.7190 0.6965 -2.2027 26 6 7.4041 0.2766 -2.2780 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.7161 3.3140 1.0576 35 1 5.1699 2.8797 0.1264 36 1 3.7168 3.4689 -0.7157 37 1 2.7787 1.0344 -2.9030 38 1 3.5704 2.5461 -2.3968 39 1 4.5041 1.2959 -3.2533 40 1 6.7148 0.0662 1.0172 41 1 9.0571 0.8137 1.1513 42 1 10.9830 1.9600 -1.7577 43 1 10.8891 1.9348 0.0196 44 1 14.4925 1.6509 -0.6861 45 1 9.2821 0.8733 -3.1072 46 1 6.9400 0.1251 -3.2414 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884937052.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:54 Heat of formation + Delta-G solvation = -91.408644 kcal Electronic energy + Delta-G solvation = -25979.454919 eV Core-core repulsion = 22380.412190 eV Total energy + Delta-G solvation = -3599.042728 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.24808 -39.00102 -38.36281 -36.97380 -35.61216 -34.75405 -33.32928 -31.99962 -31.79223 -29.25829 -27.60536 -27.18475 -25.59533 -23.74742 -22.77397 -22.45889 -21.56558 -19.96879 -19.07060 -18.65712 -18.51363 -17.22239 -16.87861 -16.36430 -16.04450 -15.93405 -15.61028 -15.26589 -15.01819 -14.88482 -14.63531 -14.48252 -13.97454 -13.89485 -13.77380 -13.50967 -13.42157 -13.41029 -13.35361 -13.19759 -12.96452 -12.72306 -12.69515 -12.67394 -12.43634 -12.23929 -12.12993 -12.05904 -11.70701 -11.63435 -11.57824 -11.44874 -11.41480 -10.66568 -10.06681 -9.98430 -9.87665 -8.28287 -6.41038 -0.66852 -0.07778 0.37593 1.37493 1.37697 1.49280 1.94180 2.33907 2.57177 2.77724 3.04288 3.23002 3.66298 3.84077 3.94368 4.05279 4.12336 4.13920 4.16836 4.37187 4.43816 4.45685 4.53238 4.68751 4.74576 4.78388 4.80064 4.86505 4.88645 4.90314 4.99760 5.03071 5.09054 5.11189 5.22022 5.23026 5.24677 5.31301 5.31514 5.41505 5.46367 5.55311 5.65837 5.73661 5.84434 5.90711 6.08628 6.70583 7.28031 8.81764 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.026440 B = 0.002838 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.749164 B = 9863.018271 C =10087.012050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.135 4.135 3 C -0.118 4.118 4 C 0.135 3.865 5 H 0.091 0.909 6 C -0.163 4.163 7 N -0.986 5.986 8 C 0.082 3.918 9 S 2.709 3.291 10 O -0.983 6.983 11 O -0.978 6.978 12 C -0.702 4.702 13 C -0.019 4.019 14 C -0.153 4.153 15 C -0.003 4.003 16 C 0.049 3.951 17 C -0.534 4.534 18 H 0.053 0.947 19 C 0.010 3.990 20 N -0.925 5.925 21 Si 0.964 3.036 22 H -0.271 1.271 23 H -0.277 1.277 24 H -0.268 1.268 25 C -0.154 4.154 26 C -0.021 4.021 27 H 0.049 0.951 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.041 0.959 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.048 0.952 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.099 0.901 39 H 0.070 0.930 40 H 0.153 0.847 41 H 0.130 0.870 42 H 0.014 0.986 43 H 0.014 0.986 44 H 0.268 0.732 45 H 0.130 0.870 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.618 3.328 0.142 25.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C -0.157 4.157 4 C 0.030 3.970 5 H 0.109 0.891 6 C -0.221 4.221 7 N -0.826 5.826 8 C -0.063 4.063 9 S 2.801 3.199 10 O -0.974 6.974 11 O -0.968 6.968 12 C -0.788 4.788 13 C -0.038 4.038 14 C -0.172 4.172 15 C -0.004 4.004 16 C 0.012 3.988 17 C -0.572 4.572 18 H 0.071 0.929 19 C -0.189 4.189 20 N -0.564 5.564 21 Si 0.788 3.212 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.193 1.193 25 C -0.173 4.173 26 C -0.040 4.040 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.117 0.883 39 H 0.089 0.911 40 H 0.171 0.829 41 H 0.148 0.852 42 H 0.032 0.968 43 H 0.032 0.968 44 H 0.077 0.923 45 H 0.148 0.852 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -25.748 2.574 0.110 25.877 hybrid contribution 1.965 -0.174 0.007 1.973 sum -23.783 2.400 0.117 23.904 Atomic orbital electron populations 1.21744 0.94570 1.01737 1.02494 1.21604 0.96959 0.97531 1.01210 1.21926 0.92821 0.96675 1.04247 1.21228 0.95705 0.95761 0.84352 0.89110 1.22175 1.01194 0.94968 1.03797 1.57347 1.63964 1.47873 1.13461 1.21714 1.01631 1.00707 0.82199 1.01307 0.72829 0.73357 0.72430 1.93520 1.86364 1.73928 1.43544 1.93517 1.84404 1.72615 1.46305 1.30915 1.26080 1.22221 0.99609 1.20988 0.94582 0.91758 0.96520 1.21299 0.94736 1.02536 0.98656 1.20818 0.95786 0.89873 0.93901 1.18258 0.87615 0.96039 0.96872 1.21280 0.91577 0.92670 1.51661 0.92911 1.25859 0.99742 0.98970 0.94350 1.70047 1.13061 1.22745 1.50547 0.85466 0.78044 0.79112 0.78581 1.19639 1.20224 1.19299 1.21304 0.95523 1.02632 0.97802 1.21007 0.93661 0.91781 0.97584 0.93190 0.91690 0.92070 0.94059 0.92556 0.88919 0.89925 0.89791 0.93272 0.90640 0.91384 0.88255 0.91143 0.82925 0.85191 0.96810 0.96791 0.92344 0.85180 0.82899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.91 71.98 0.71 -1.15 16 2 C -0.14 -2.21 5.82 30.60 0.18 -2.03 16 3 C -0.12 -1.45 4.64 30.59 0.14 -1.30 16 4 C 0.13 2.13 2.63 44.99 0.12 2.25 16 5 H 0.09 1.64 6.91 -2.39 -0.02 1.62 16 6 C -0.16 -2.09 9.17 71.98 0.66 -1.43 16 7 N -0.99 -18.77 2.52 -516.50 -1.30 -20.07 16 8 C 0.08 1.16 9.25 127.77 1.18 2.35 16 9 S 2.71 73.82 5.64 -56.49 -0.32 73.51 16 10 O -0.98 -31.01 16.36 -128.00 -2.09 -33.11 16 11 O -0.98 -30.22 15.85 -128.00 -2.03 -32.25 16 12 C -0.70 -21.67 5.97 22.27 0.13 -21.53 16 13 C -0.02 -0.62 9.52 22.27 0.21 -0.41 16 14 C -0.15 -5.79 9.70 22.27 0.22 -5.58 16 15 C 0.00 -0.15 5.07 -19.87 -0.10 -0.25 16 16 C 0.05 2.53 5.10 29.10 0.15 2.67 16 17 C -0.53 -29.91 9.09 25.60 0.23 -29.68 16 18 H 0.05 2.95 7.74 -2.91 -0.02 2.92 16 19 C 0.01 0.55 5.46 84.66 0.46 1.01 16 20 N -0.92 -54.24 13.29 21.45 0.28 -53.96 16 21 Si 0.96 43.78 29.54 68.60 2.03 45.81 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 23 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 24 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 25 C -0.15 -5.81 9.70 22.27 0.22 -5.59 16 26 C -0.02 -0.68 9.52 22.27 0.21 -0.47 16 27 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.66 8.14 -2.38 -0.02 0.65 16 30 H 0.04 0.80 7.75 -2.39 -0.02 0.78 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.08 0.81 7.51 -2.39 -0.02 0.79 16 34 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.07 0.77 6.66 -2.39 -0.02 0.75 16 37 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.10 0.92 6.43 -2.39 -0.02 0.91 16 39 H 0.07 1.05 7.79 -2.39 -0.02 1.03 16 40 H 0.15 4.07 7.62 -2.91 -0.02 4.05 16 41 H 0.13 4.72 8.06 -2.91 -0.02 4.69 16 42 H 0.01 0.74 8.09 -2.38 -0.02 0.72 16 43 H 0.01 0.75 8.09 -2.39 -0.02 0.73 16 44 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 45 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 46 H 0.15 4.07 7.62 -2.91 -0.02 4.05 16 Total: -1.00 -69.47 386.86 2.23 -67.24 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 0.94 Total: 13.98 kcal Atomic # 6 Polarization: -65.87 SS G_CDS: 4.73 Total: -61.15 kcal Atomic # 7 Polarization: -73.01 SS G_CDS: -1.02 Total: -74.03 kcal Atomic # 8 Polarization: -61.23 SS G_CDS: -4.12 Total: -65.35 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: 73.82 SS G_CDS: -0.32 Total: 73.51 kcal Total: -69.47 2.23 -67.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884937052.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.168 kcal (2) G-P(sol) polarization free energy of solvation -69.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds