Wall clock time and date at job start Tue Mar 31 2020 14:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47255 * 2 1 4 4 C 1.52996 * 109.47186 * 120.00115 * 2 1 3 5 5 C 1.53001 * 109.46868 * 175.00032 * 4 2 1 6 6 N 1.46501 * 109.46892 * 179.97438 * 5 4 2 7 7 C 1.46506 * 120.00098 * 85.00151 * 6 5 4 8 8 S 1.65599 * 120.00111 * 264.99830 * 6 5 4 9 9 O 1.42099 * 106.40401 * 23.54139 * 8 6 5 10 10 O 1.42103 * 106.40122 * 156.46115 * 8 6 5 11 11 C 1.76205 * 107.21913 * 270.00122 * 8 6 5 12 12 C 1.38237 * 119.99944 * 269.72681 * 11 8 6 13 13 C 1.38228 * 119.99822 * 179.76597 * 12 11 8 14 14 C 1.38240 * 119.99917 * 0.50634 * 13 12 11 15 15 C 1.50704 * 119.99792 * 179.72576 * 14 13 12 16 16 C 1.50701 * 109.46916 * 270.02272 * 15 14 13 17 17 H 1.08005 * 120.00117 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99767 * 180.02562 * 16 15 14 19 19 N 1.31508 * 120.00083 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99989 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47004 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47126 * 119.99592 * 20 18 16 23 23 H 1.48496 * 109.47571 * 240.00179 * 20 18 16 24 24 C 1.38229 * 120.00165 * 359.74764 * 14 13 12 25 25 C 1.38227 * 119.99711 * 89.99833 * 11 8 6 26 26 H 1.08999 * 109.46960 * 300.00209 * 1 2 3 27 27 H 1.09001 * 109.47372 * 59.99771 * 1 2 3 28 28 H 1.09004 * 109.46872 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46708 * 240.00526 * 2 1 3 30 30 H 1.09009 * 109.46871 * 300.00295 * 3 2 1 31 31 H 1.09005 * 109.47020 * 59.99688 * 3 2 1 32 32 H 1.08994 * 109.47683 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47272 * 55.00015 * 4 2 1 34 34 H 1.08997 * 109.47149 * 294.99990 * 4 2 1 35 35 H 1.09001 * 109.47188 * 59.99932 * 5 4 2 36 36 H 1.09001 * 109.47155 * 299.99445 * 5 4 2 37 37 H 1.09001 * 109.47060 * 270.00243 * 7 6 5 38 38 H 1.09004 * 109.47073 * 29.99732 * 7 6 5 39 39 H 1.09000 * 109.47212 * 149.99814 * 7 6 5 40 40 H 1.07998 * 120.00039 * 359.97438 * 12 11 8 41 41 H 1.08003 * 120.00273 * 180.23306 * 13 12 11 42 42 H 1.09000 * 109.47411 * 30.01925 * 15 14 13 43 43 H 1.09002 * 109.47201 * 150.02446 * 15 14 13 44 44 H 0.97002 * 120.00292 * 180.02562 * 19 18 16 45 45 H 1.07995 * 119.99963 * 179.97438 * 24 14 13 46 46 H 1.08000 * 120.00682 * 0.02562 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.8310 1.1878 6 7 4.0533 -1.5211 2.3843 7 6 4.0898 -2.9852 2.4219 8 16 4.5641 -0.6462 3.6942 9 8 3.9239 0.6193 3.6060 10 8 4.4410 -1.5027 4.8215 11 6 6.2877 -0.3478 3.4821 12 6 7.2116 -1.2442 3.9860 13 6 8.5636 -1.0125 3.8154 14 6 8.9920 0.1210 3.1500 15 6 10.4662 0.3767 2.9694 16 6 10.9848 1.1730 4.1390 17 1 10.3141 1.4644 4.9339 18 6 12.3155 1.5295 4.1943 19 7 13.1323 1.1743 3.2268 20 14 12.9584 2.5172 5.6438 21 1 11.8466 2.7877 6.5905 22 1 14.0209 1.7451 6.3366 23 1 13.5186 3.8034 5.1570 24 6 8.0683 1.0200 2.6507 25 6 6.7161 0.7856 2.8167 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6054 -1.7198 1.2951 34 1 1.7517 -0.1584 2.1369 35 1 3.9995 0.1676 1.1419 36 1 3.8532 -1.3940 0.3001 37 1 3.1447 -3.3623 2.8126 38 1 4.2461 -3.3707 1.4143 39 1 4.9058 -3.3119 3.0666 40 1 6.8769 -2.1272 4.5101 41 1 9.2853 -1.7147 4.2058 42 1 10.9958 -0.5744 2.9139 43 1 10.6276 0.9368 2.0483 44 1 14.0686 1.4248 3.2659 45 1 8.4031 1.9057 2.1312 46 1 5.9944 1.4884 2.4272 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884968099.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:41 Heat of formation + Delta-G solvation = -75.840323 kcal Electronic energy + Delta-G solvation = -25554.633235 eV Core-core repulsion = 21956.265600 eV Total energy + Delta-G solvation = -3598.367635 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -38.80490 -37.89870 -37.14297 -35.74490 -35.36587 -33.68622 -31.56456 -30.58918 -29.72527 -27.44396 -27.36402 -26.24515 -23.73096 -23.14748 -22.34014 -20.85534 -20.23774 -18.97108 -17.78010 -17.37292 -16.45848 -16.30735 -15.44511 -15.18284 -15.05019 -14.63382 -14.38212 -14.33258 -13.96111 -13.85316 -13.57155 -13.14045 -13.13608 -12.84058 -12.69124 -12.44173 -12.24511 -12.12554 -12.02858 -11.96323 -11.73944 -11.69508 -11.49886 -11.45666 -11.07041 -10.95469 -10.93759 -10.87174 -10.72524 -10.51201 -10.49931 -9.75665 -9.66314 -9.19009 -8.60074 -8.55153 -8.38190 -6.18210 -4.23110 0.46616 1.32753 1.78546 2.97840 3.22535 3.30604 3.35987 3.78870 4.08308 4.34510 4.36804 4.49291 4.59651 4.67616 4.76490 5.02746 5.14370 5.19695 5.20529 5.22608 5.32568 5.36232 5.40557 5.43292 5.50848 5.58789 5.67599 5.70126 5.71498 5.74944 5.83665 5.90395 5.93414 5.95387 6.11198 6.19153 6.24289 6.31994 6.40064 6.53348 6.82909 6.89741 7.28378 7.42401 7.57958 7.77139 8.12308 8.81961 9.41974 10.91866 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.020978 B = 0.002757 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.388563 B =10152.830574 C =10620.271865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.154 4.154 4 C -0.137 4.137 5 C 0.123 3.877 6 N -1.003 6.003 7 C 0.095 3.905 8 S 2.693 3.307 9 O -0.959 6.959 10 O -0.963 6.963 11 C -0.705 4.705 12 C -0.025 4.025 13 C -0.145 4.145 14 C 0.026 3.974 15 C 0.039 3.961 16 C -0.517 4.517 17 H 0.059 0.941 18 C 0.060 3.940 19 N -0.891 5.891 20 Si 0.898 3.102 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.145 4.145 25 C -0.024 4.024 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.057 0.943 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.035 0.965 43 H 0.035 0.965 44 H 0.264 0.736 45 H 0.129 0.871 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.574 -6.446 -7.659 23.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.211 4.211 4 C -0.176 4.176 5 C -0.003 4.003 6 N -0.841 5.841 7 C -0.051 4.051 8 S 2.786 3.214 9 O -0.950 6.950 10 O -0.954 6.954 11 C -0.794 4.794 12 C -0.044 4.044 13 C -0.164 4.164 14 C 0.026 3.974 15 C 0.002 3.998 16 C -0.555 4.555 17 H 0.078 0.922 18 C -0.142 4.142 19 N -0.530 5.530 20 Si 0.726 3.274 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.164 4.164 25 C -0.043 4.043 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.073 0.927 45 H 0.147 0.853 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -21.921 -6.195 -7.029 23.840 hybrid contribution 1.267 0.495 0.419 1.423 sum -20.654 -5.701 -6.610 22.423 Atomic orbital electron populations 1.21836 0.95187 1.01575 1.01842 1.21059 0.95813 0.96612 0.97839 1.21939 1.01447 0.95744 1.01968 1.22122 0.95535 1.01047 0.98922 1.21426 0.94329 0.97441 0.87069 1.57536 1.78570 1.15573 1.32382 1.21472 1.02220 0.78354 1.03026 1.01844 0.74053 0.72958 0.72531 1.93550 1.74200 1.41203 1.86028 1.93549 1.86667 1.67463 1.47679 1.30421 1.24193 1.06537 1.18232 1.20767 0.93292 0.96497 0.93849 1.21249 0.94973 0.99022 1.01167 1.21116 0.99063 0.90242 0.87026 1.18544 0.84483 0.98349 0.98388 1.21010 0.94141 1.34550 1.05761 0.92238 1.25007 0.96789 0.95966 0.96422 1.69953 1.04829 1.45954 1.32247 0.86426 0.78958 0.79762 0.82291 1.19559 1.20793 1.20783 1.21246 0.92196 1.00397 1.02567 1.20761 0.96740 0.93627 0.93216 0.92582 0.92714 0.92834 0.91131 0.92836 0.92153 0.92250 0.91506 0.90943 0.89746 0.90306 0.92449 0.90941 0.90923 0.85360 0.85329 0.94711 0.94709 0.92679 0.85334 0.85357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.19 37.16 0.34 -0.65 16 2 C -0.09 -0.70 2.92 -90.62 -0.26 -0.96 16 3 C -0.15 -1.24 8.95 37.16 0.33 -0.90 16 4 C -0.14 -1.18 5.01 -26.73 -0.13 -1.31 16 5 C 0.12 1.12 5.12 -4.04 -0.02 1.10 16 6 N -1.00 -10.77 3.18 -121.75 -0.39 -11.16 16 7 C 0.09 0.81 10.33 59.85 0.62 1.43 16 8 S 2.69 38.77 5.60 -107.50 -0.60 38.17 16 9 O -0.96 -15.44 16.25 -57.17 -0.93 -16.37 16 10 O -0.96 -15.92 16.35 -57.17 -0.93 -16.86 16 11 C -0.70 -11.32 5.97 -39.59 -0.24 -11.56 16 12 C -0.02 -0.41 9.52 -39.59 -0.38 -0.78 16 13 C -0.15 -2.72 9.70 -39.58 -0.38 -3.10 16 14 C 0.03 0.54 5.07 -104.62 -0.53 0.01 16 15 C 0.04 0.96 5.10 -29.03 -0.15 0.81 16 16 C -0.52 -14.03 9.09 -34.44 -0.31 -14.34 16 17 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -25.52 13.29 55.43 0.74 -24.78 16 20 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 C -0.15 -2.71 9.70 -39.58 -0.38 -3.09 16 25 C -0.02 -0.39 9.52 -39.58 -0.38 -0.77 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.38 8.14 -51.92 -0.42 -0.05 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.48 6.57 -51.93 -0.34 0.14 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.80 6.03 -51.93 -0.31 0.49 16 36 H 0.08 0.56 7.96 -51.93 -0.41 0.15 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.46 7.94 -51.93 -0.41 0.05 16 39 H 0.07 0.62 7.79 -51.93 -0.40 0.22 16 40 H 0.13 1.82 7.61 -52.49 -0.40 1.42 16 41 H 0.13 2.27 8.06 -52.48 -0.42 1.85 16 42 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 43 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 44 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 45 H 0.13 2.26 8.06 -52.49 -0.42 1.84 16 46 H 0.13 1.80 7.62 -52.49 -0.40 1.40 16 LS Contribution 389.34 15.07 5.87 5.87 Total: -1.00 -32.08 389.34 -10.96 -43.04 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -7.72 Total: -1.46 kcal Atomic # 6 Polarization: -30.59 SS G_CDS: -1.97 Total: -32.57 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.35 Total: -35.95 kcal Atomic # 8 Polarization: -31.36 SS G_CDS: -1.86 Total: -33.22 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 38.77 SS G_CDS: -0.60 Total: 38.17 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.08 -10.96 -43.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884968099.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.798 kcal (2) G-P(sol) polarization free energy of solvation -32.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds