Wall clock time and date at job start Tue Mar 31 2020 14:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47255 * 2 1 4 4 C 1.52996 * 109.47186 * 120.00115 * 2 1 3 5 5 C 1.53001 * 109.46868 * 175.00032 * 4 2 1 6 6 N 1.46501 * 109.46892 * 179.97438 * 5 4 2 7 7 C 1.46506 * 120.00098 * 85.00151 * 6 5 4 8 8 S 1.65599 * 120.00111 * 264.99830 * 6 5 4 9 9 O 1.42099 * 106.40401 * 23.54139 * 8 6 5 10 10 O 1.42103 * 106.40122 * 156.46115 * 8 6 5 11 11 C 1.76205 * 107.21913 * 270.00122 * 8 6 5 12 12 C 1.38237 * 119.99944 * 269.72681 * 11 8 6 13 13 C 1.38228 * 119.99822 * 179.76597 * 12 11 8 14 14 C 1.38240 * 119.99917 * 0.50634 * 13 12 11 15 15 C 1.50704 * 119.99792 * 179.72576 * 14 13 12 16 16 C 1.50701 * 109.46916 * 270.02272 * 15 14 13 17 17 H 1.08005 * 120.00117 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99767 * 180.02562 * 16 15 14 19 19 N 1.31508 * 120.00083 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99989 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47004 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47126 * 119.99592 * 20 18 16 23 23 H 1.48496 * 109.47571 * 240.00179 * 20 18 16 24 24 C 1.38229 * 120.00165 * 359.74764 * 14 13 12 25 25 C 1.38227 * 119.99711 * 89.99833 * 11 8 6 26 26 H 1.08999 * 109.46960 * 300.00209 * 1 2 3 27 27 H 1.09001 * 109.47372 * 59.99771 * 1 2 3 28 28 H 1.09004 * 109.46872 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46708 * 240.00526 * 2 1 3 30 30 H 1.09009 * 109.46871 * 300.00295 * 3 2 1 31 31 H 1.09005 * 109.47020 * 59.99688 * 3 2 1 32 32 H 1.08994 * 109.47683 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47272 * 55.00015 * 4 2 1 34 34 H 1.08997 * 109.47149 * 294.99990 * 4 2 1 35 35 H 1.09001 * 109.47188 * 59.99932 * 5 4 2 36 36 H 1.09001 * 109.47155 * 299.99445 * 5 4 2 37 37 H 1.09001 * 109.47060 * 270.00243 * 7 6 5 38 38 H 1.09004 * 109.47073 * 29.99732 * 7 6 5 39 39 H 1.09000 * 109.47212 * 149.99814 * 7 6 5 40 40 H 1.07998 * 120.00039 * 359.97438 * 12 11 8 41 41 H 1.08003 * 120.00273 * 180.23306 * 13 12 11 42 42 H 1.09000 * 109.47411 * 30.01925 * 15 14 13 43 43 H 1.09002 * 109.47201 * 150.02446 * 15 14 13 44 44 H 0.97002 * 120.00292 * 180.02562 * 19 18 16 45 45 H 1.07995 * 119.99963 * 179.97438 * 24 14 13 46 46 H 1.08000 * 120.00682 * 0.02562 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.8310 1.1878 6 7 4.0533 -1.5211 2.3843 7 6 4.0898 -2.9852 2.4219 8 16 4.5641 -0.6462 3.6942 9 8 3.9239 0.6193 3.6060 10 8 4.4410 -1.5027 4.8215 11 6 6.2877 -0.3478 3.4821 12 6 7.2116 -1.2442 3.9860 13 6 8.5636 -1.0125 3.8154 14 6 8.9920 0.1210 3.1500 15 6 10.4662 0.3767 2.9694 16 6 10.9848 1.1730 4.1390 17 1 10.3141 1.4644 4.9339 18 6 12.3155 1.5295 4.1943 19 7 13.1323 1.1743 3.2268 20 14 12.9584 2.5172 5.6438 21 1 11.8466 2.7877 6.5905 22 1 14.0209 1.7451 6.3366 23 1 13.5186 3.8034 5.1570 24 6 8.0683 1.0200 2.6507 25 6 6.7161 0.7856 2.8167 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6054 -1.7198 1.2951 34 1 1.7517 -0.1584 2.1369 35 1 3.9995 0.1676 1.1419 36 1 3.8532 -1.3940 0.3001 37 1 3.1447 -3.3623 2.8126 38 1 4.2461 -3.3707 1.4143 39 1 4.9058 -3.3119 3.0666 40 1 6.8769 -2.1272 4.5101 41 1 9.2853 -1.7147 4.2058 42 1 10.9958 -0.5744 2.9139 43 1 10.6276 0.9368 2.0483 44 1 14.0686 1.4248 3.2659 45 1 8.4031 1.9057 2.1312 46 1 5.9944 1.4884 2.4272 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884968099.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:39 Heat of formation + Delta-G solvation = -94.086669 kcal Electronic energy + Delta-G solvation = -25555.424456 eV Core-core repulsion = 21956.265600 eV Total energy + Delta-G solvation = -3599.158856 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.24743 -38.66505 -38.28790 -36.96948 -36.07045 -35.60857 -33.33208 -31.98397 -30.38399 -29.25658 -27.94789 -26.96215 -25.59440 -23.91894 -23.71000 -22.44221 -20.83656 -20.09347 -18.87223 -18.61540 -18.46203 -17.31025 -16.87167 -16.31861 -16.06204 -15.99942 -15.59785 -15.38671 -15.08798 -14.68465 -14.61744 -14.48406 -14.29662 -13.96403 -13.80539 -13.50778 -13.42073 -13.40346 -13.20631 -13.14226 -13.05066 -12.74744 -12.69766 -12.65914 -12.53302 -12.18818 -12.06228 -12.03454 -11.70863 -11.66075 -11.47391 -11.43976 -11.34893 -10.66911 -10.08140 -9.98431 -9.89622 -8.28342 -6.40957 -0.67634 -0.07951 0.37620 1.36406 1.37935 1.50599 1.94254 2.33978 2.56967 2.77364 3.04318 3.23318 3.73640 3.84737 3.94383 3.96804 4.06915 4.14216 4.16171 4.35734 4.45794 4.47570 4.58149 4.69234 4.74434 4.79549 4.83586 4.85027 4.89041 4.93244 5.00940 5.07552 5.08303 5.10489 5.17475 5.23326 5.25011 5.26773 5.31678 5.39206 5.50358 5.58212 5.66110 5.67020 5.84520 5.90786 6.08706 6.70914 7.28187 8.81937 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.020978 B = 0.002757 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.388563 B =10152.830574 C =10620.271865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 C -0.157 4.157 4 C -0.136 4.136 5 C 0.113 3.887 6 N -0.994 5.994 7 C 0.082 3.918 8 S 2.711 3.289 9 O -0.977 6.977 10 O -0.983 6.983 11 C -0.702 4.702 12 C -0.021 4.021 13 C -0.154 4.154 14 C -0.004 4.004 15 C 0.048 3.952 16 C -0.533 4.533 17 H 0.053 0.947 18 C 0.009 3.991 19 N -0.925 5.925 20 Si 0.964 3.036 21 H -0.269 1.269 22 H -0.275 1.275 23 H -0.274 1.274 24 C -0.154 4.154 25 C -0.020 4.020 26 H 0.046 0.954 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.050 0.950 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.068 0.932 38 H 0.100 0.900 39 H 0.071 0.929 40 H 0.155 0.845 41 H 0.131 0.869 42 H 0.014 0.986 43 H 0.014 0.986 44 H 0.268 0.732 45 H 0.131 0.869 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.465 -7.092 -7.927 25.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 C -0.215 4.215 4 C -0.175 4.175 5 C -0.011 4.011 6 N -0.834 5.834 7 C -0.062 4.062 8 S 2.803 3.197 9 O -0.967 6.967 10 O -0.973 6.973 11 C -0.789 4.789 12 C -0.041 4.041 13 C -0.173 4.173 14 C -0.004 4.004 15 C 0.012 3.988 16 C -0.571 4.571 17 H 0.071 0.929 18 C -0.190 4.190 19 N -0.564 5.564 20 Si 0.789 3.211 21 H -0.193 1.193 22 H -0.200 1.200 23 H -0.200 1.200 24 C -0.173 4.173 25 C -0.039 4.039 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.105 0.895 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.125 0.875 37 H 0.086 0.914 38 H 0.118 0.882 39 H 0.089 0.911 40 H 0.172 0.828 41 H 0.149 0.851 42 H 0.032 0.968 43 H 0.032 0.968 44 H 0.077 0.923 45 H 0.149 0.851 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -23.794 -6.838 -7.295 25.809 hybrid contribution 1.709 0.632 0.435 1.874 sum -22.084 -6.206 -6.860 23.943 Atomic orbital electron populations 1.21838 0.94759 1.02083 1.01766 1.21064 0.96169 0.96000 0.97840 1.21975 1.01365 0.96403 1.01713 1.22111 0.95221 1.01561 0.98598 1.21696 0.94633 0.97632 0.87171 1.57296 1.77672 1.16476 1.31938 1.21785 1.02891 0.76642 1.04928 1.01288 0.73036 0.72562 0.72863 1.93527 1.73996 1.42626 1.86557 1.93521 1.86555 1.67796 1.49444 1.30903 1.25630 1.05840 1.16507 1.21025 0.92254 0.97400 0.93372 1.21318 0.96285 0.98523 1.01192 1.20830 0.97137 0.92409 0.90044 1.18267 0.87312 0.96538 0.96732 1.21308 0.94487 1.34884 1.06382 0.92917 1.25860 0.97054 0.96964 0.99077 1.70055 1.05249 1.47087 1.34032 0.85409 0.78334 0.78435 0.78968 1.19282 1.20002 1.19982 1.21313 0.93015 1.00203 1.02757 1.21013 0.96103 0.94154 0.92656 0.93492 0.92012 0.92036 0.89544 0.91918 0.93621 0.92424 0.90244 0.93100 0.90277 0.87525 0.91358 0.88184 0.91063 0.82774 0.85121 0.96767 0.96765 0.92350 0.85133 0.82799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.19 71.98 0.66 -1.03 16 2 C -0.09 -1.14 2.92 -10.79 -0.03 -1.17 16 3 C -0.16 -2.30 8.95 71.98 0.64 -1.66 16 4 C -0.14 -2.02 5.01 30.59 0.15 -1.87 16 5 C 0.11 1.75 5.12 86.38 0.44 2.19 16 6 N -0.99 -18.66 3.18 -539.09 -1.72 -20.38 16 7 C 0.08 1.13 10.33 127.77 1.32 2.45 16 8 S 2.71 72.93 5.60 -56.49 -0.32 72.61 16 9 O -0.98 -29.98 16.25 -128.00 -2.08 -32.06 16 10 O -0.98 -30.64 16.35 -128.00 -2.09 -32.73 16 11 C -0.70 -21.45 5.97 22.27 0.13 -21.32 16 12 C -0.02 -0.68 9.52 22.27 0.21 -0.47 16 13 C -0.15 -5.80 9.70 22.27 0.22 -5.59 16 14 C 0.00 -0.17 5.07 -19.86 -0.10 -0.27 16 15 C 0.05 2.48 5.10 29.10 0.15 2.63 16 16 C -0.53 -29.77 9.09 25.60 0.23 -29.54 16 17 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 18 C 0.01 0.53 5.46 84.66 0.46 0.99 16 19 N -0.92 -54.14 13.29 21.45 0.28 -53.86 16 20 Si 0.96 43.73 29.54 68.60 2.03 45.76 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 24 C -0.15 -5.78 9.70 22.27 0.22 -5.57 16 25 C -0.02 -0.64 9.52 22.27 0.21 -0.43 16 26 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.06 0.85 6.57 -2.39 -0.02 0.83 16 33 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.08 1.33 6.03 -2.39 -0.01 1.31 16 36 H 0.11 1.09 7.96 -2.39 -0.02 1.08 16 37 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.10 0.85 7.94 -2.38 -0.02 0.83 16 39 H 0.07 1.02 7.79 -2.39 -0.02 1.00 16 40 H 0.15 4.04 7.61 -2.91 -0.02 4.02 16 41 H 0.13 4.71 8.06 -2.91 -0.02 4.69 16 42 H 0.01 0.76 8.09 -2.39 -0.02 0.74 16 43 H 0.01 0.76 8.09 -2.39 -0.02 0.74 16 44 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 45 H 0.13 4.70 8.06 -2.91 -0.02 4.68 16 46 H 0.15 4.03 7.62 -2.91 -0.02 4.01 16 Total: -1.00 -69.62 389.34 1.96 -67.66 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.94 Total: 13.63 kcal Atomic # 6 Polarization: -65.56 SS G_CDS: 4.92 Total: -60.63 kcal Atomic # 7 Polarization: -72.80 SS G_CDS: -1.43 Total: -74.24 kcal Atomic # 8 Polarization: -60.62 SS G_CDS: -4.17 Total: -64.79 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: 72.93 SS G_CDS: -0.32 Total: 72.61 kcal Total: -69.62 1.96 -67.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884968099.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.429 kcal (2) G-P(sol) polarization free energy of solvation -69.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds