Wall clock time and date at job start Tue Mar 31 2020 15:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47112 * 2 1 4 4 C 1.53001 * 109.47463 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.46906 * 54.99816 * 4 3 2 6 6 C 1.52993 * 109.47412 * 175.00197 * 4 3 2 7 7 C 1.53007 * 109.47237 * 185.38867 * 6 4 3 8 8 N 1.46502 * 109.47231 * 295.00348 * 4 3 2 9 9 S 1.65599 * 120.00307 * 114.71046 * 8 4 3 10 10 O 1.42095 * 106.40504 * 178.72162 * 9 8 4 11 11 O 1.42102 * 106.39932 * 311.64605 * 9 8 4 12 12 C 1.76197 * 107.21432 * 65.18030 * 9 8 4 13 13 C 1.38227 * 120.00510 * 272.49098 * 12 9 8 14 14 C 1.38238 * 120.00518 * 179.74539 * 13 12 9 15 15 C 1.38234 * 119.99310 * 0.53018 * 14 13 12 16 16 C 1.50709 * 119.99978 * 179.76810 * 15 14 13 17 17 C 1.50704 * 109.46828 * 269.97757 * 16 15 14 18 18 H 1.07996 * 120.00166 * 0.02562 * 17 16 15 19 19 C 1.37876 * 119.99415 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00565 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99778 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.46836 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47160 * 120.00464 * 21 19 17 24 24 H 1.48502 * 109.46797 * 240.00102 * 21 19 17 25 25 C 1.38238 * 120.00383 * 359.74513 * 15 14 13 26 26 C 1.38227 * 119.99843 * 359.97438 * 25 15 14 27 27 H 1.08995 * 109.47376 * 59.99228 * 1 2 3 28 28 H 1.09002 * 109.47048 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46701 * 299.99800 * 1 2 3 30 30 H 1.09003 * 109.46340 * 240.00595 * 2 1 3 31 31 H 1.08997 * 109.47450 * 120.00239 * 2 1 3 32 32 H 1.09004 * 109.47174 * 60.00490 * 3 2 1 33 33 H 1.09003 * 109.47645 * 300.00912 * 3 2 1 34 34 H 1.09002 * 109.47208 * 305.38305 * 6 4 3 35 35 H 1.09002 * 109.47294 * 65.38875 * 6 4 3 36 36 H 1.08996 * 109.47229 * 183.79238 * 7 6 4 37 37 H 1.08995 * 109.46973 * 303.79565 * 7 6 4 38 38 H 1.08997 * 109.46876 * 63.79464 * 7 6 4 39 39 H 0.97002 * 119.99403 * 294.71899 * 8 4 3 40 40 H 1.08005 * 120.00145 * 359.97438 * 13 12 9 41 41 H 1.07994 * 120.00610 * 180.29456 * 14 13 12 42 42 H 1.08998 * 109.46587 * 29.97838 * 16 15 14 43 43 H 1.09001 * 109.46978 * 149.97618 * 16 15 14 44 44 H 0.96995 * 120.00503 * 179.97438 * 20 19 17 45 45 H 1.08008 * 119.99971 * 179.97438 * 25 15 14 46 46 H 1.08008 * 120.00131 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8532 -0.8427 6 6 4.0799 2.8795 -0.1263 7 6 5.6039 2.8699 -0.2621 8 7 4.0589 0.8586 1.2508 9 16 4.9003 -0.5676 1.2261 10 8 5.2556 -0.8473 2.5731 11 8 4.1483 -1.4630 0.4185 12 6 6.4084 -0.2684 0.3655 13 6 6.4564 -0.3960 -1.0100 14 6 7.6383 -0.1562 -1.6857 15 6 8.7750 0.2006 -0.9846 16 6 10.0649 0.4570 -1.7206 17 6 10.8434 -0.8285 -1.8325 18 1 10.4439 -1.7400 -1.4131 19 6 12.0652 -0.8410 -2.4714 20 7 12.5514 0.2688 -2.9826 21 14 13.0299 -2.4346 -2.6107 22 1 12.2707 -3.5314 -1.9584 23 1 13.2408 -2.7618 -4.0437 24 1 14.3456 -2.2769 -1.9402 25 6 8.7285 0.3227 0.3916 26 6 7.5452 0.0885 1.0666 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8932 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6766 1.9564 -0.8899 34 1 3.6396 3.3455 -1.0079 35 1 3.7979 3.4442 0.7624 36 1 5.9732 3.8952 -0.2839 37 1 6.0410 2.3442 0.5868 38 1 5.8831 2.3634 -1.1860 39 1 3.8897 1.3073 2.0940 40 1 5.5695 -0.6795 -1.5574 41 1 7.6746 -0.2513 -2.7609 42 1 9.8445 0.8364 -2.7184 43 1 10.6549 1.1928 -1.1742 44 1 13.4111 0.2601 -3.4317 45 1 9.6167 0.6011 0.9393 46 1 7.5087 0.1843 2.1418 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884982807.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:10 Heat of formation + Delta-G solvation = -86.621890 kcal Electronic energy + Delta-G solvation = -26191.605085 eV Core-core repulsion = 22592.769926 eV Total energy + Delta-G solvation = -3598.835159 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -38.86722 -38.10456 -37.00555 -35.73604 -33.89850 -33.63796 -31.83200 -31.53541 -30.58147 -28.48576 -27.43146 -24.28644 -23.73094 -22.38796 -21.28224 -21.17530 -20.90466 -19.55198 -17.87864 -17.22628 -16.46525 -16.39814 -15.39928 -15.18239 -14.86911 -14.71242 -14.43440 -14.36080 -14.23210 -13.77793 -13.45183 -13.11633 -12.91818 -12.76577 -12.52654 -12.28488 -12.10269 -11.98293 -11.91594 -11.85450 -11.69211 -11.49774 -11.39816 -11.14661 -11.04118 -10.94614 -10.92328 -10.86706 -10.72815 -10.49445 -10.48801 -9.75918 -9.67772 -9.48979 -8.58244 -8.54655 -8.37204 -6.18203 -4.23087 0.53797 1.33693 1.79520 3.09362 3.22440 3.30618 3.35916 3.78637 4.12311 4.35651 4.37420 4.47578 4.77448 4.79266 5.00056 5.07708 5.09311 5.16509 5.22805 5.24360 5.28603 5.34266 5.54622 5.60184 5.68074 5.72029 5.73890 5.78256 5.85212 5.91139 5.92195 5.96915 6.04777 6.21845 6.25076 6.29034 6.30791 6.32914 6.50899 6.83731 6.88059 6.91574 7.28766 7.42844 7.58561 7.77188 8.12432 8.82110 9.42086 10.91853 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.020885 B = 0.003099 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.322565 B = 9034.025083 C = 9347.946445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.128 4.128 4 C 0.153 3.847 5 H 0.090 0.910 6 C -0.131 4.131 7 C -0.159 4.159 8 N -1.112 6.112 9 S 2.693 3.307 10 O -0.970 6.970 11 O -0.960 6.960 12 C -0.700 4.700 13 C -0.023 4.023 14 C -0.145 4.145 15 C 0.028 3.972 16 C 0.039 3.961 17 C -0.516 4.516 18 H 0.059 0.941 19 C 0.061 3.939 20 N -0.892 5.892 21 Si 0.898 3.102 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.144 4.144 26 C -0.022 4.022 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.415 0.585 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.263 0.737 45 H 0.127 0.873 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.574 5.980 6.147 22.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.167 4.167 4 C 0.046 3.954 5 H 0.108 0.892 6 C -0.170 4.170 7 C -0.216 4.216 8 N -0.870 5.870 9 S 2.785 3.215 10 O -0.960 6.960 11 O -0.950 6.950 12 C -0.790 4.790 13 C -0.042 4.042 14 C -0.163 4.163 15 C 0.028 3.972 16 C 0.002 3.998 17 C -0.554 4.554 18 H 0.078 0.922 19 C -0.141 4.141 20 N -0.530 5.530 21 Si 0.725 3.275 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.163 4.163 26 C -0.041 4.041 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.249 0.751 40 H 0.145 0.855 41 H 0.145 0.855 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.073 0.927 45 H 0.145 0.855 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -20.680 5.160 6.244 22.210 hybrid contribution 1.234 -0.217 -0.175 1.265 sum -19.446 4.943 6.069 20.962 Atomic orbital electron populations 1.21777 0.96229 1.01552 1.01328 1.21562 0.95287 0.96218 1.03392 1.22005 0.94385 0.97769 1.02568 1.20889 0.94076 0.95052 0.85356 0.89211 1.21897 0.97006 0.95660 1.02416 1.21875 0.94908 1.01989 1.02874 1.55651 1.71738 1.44929 1.14658 1.01721 0.73634 0.72744 0.73385 1.93560 1.84323 1.83096 1.35071 1.93575 1.69808 1.60871 1.70754 1.30296 1.19491 1.23050 1.06134 1.20725 0.98499 0.93193 0.91815 1.21213 0.92398 1.02239 1.00496 1.21083 0.96420 0.85931 0.93815 1.18538 0.87755 0.98041 0.95421 1.21010 1.03274 0.94066 1.37099 0.92247 1.25002 0.97410 0.96631 0.95107 1.69950 1.19280 1.26518 1.37246 0.86435 0.79834 0.83315 0.77913 1.19560 1.20799 1.20808 1.21227 0.97551 1.02920 0.94634 1.20747 0.91760 0.92542 0.99064 0.92942 0.92813 0.93104 0.91134 0.91773 0.91476 0.90865 0.90903 0.91482 0.92689 0.92116 0.92194 0.75095 0.85537 0.85493 0.94765 0.94776 0.92688 0.85485 0.85374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 37.16 0.37 -0.82 16 2 C -0.13 -1.19 5.11 -26.73 -0.14 -1.32 16 3 C -0.13 -0.97 4.89 -26.73 -0.13 -1.10 16 4 C 0.15 1.32 2.26 -67.93 -0.15 1.16 16 5 H 0.09 0.83 7.25 -51.93 -0.38 0.45 16 6 C -0.13 -1.01 5.61 -26.73 -0.15 -1.16 16 7 C -0.16 -1.60 9.55 37.16 0.35 -1.25 16 8 N -1.11 -10.48 4.25 -4.89 -0.02 -10.50 16 9 S 2.69 36.17 5.59 -107.50 -0.60 35.57 16 10 O -0.97 -15.57 17.22 -57.17 -0.98 -16.56 16 11 O -0.96 -14.66 15.48 -57.17 -0.89 -15.55 16 12 C -0.70 -10.53 4.73 -39.58 -0.19 -10.72 16 13 C -0.02 -0.35 8.85 -39.59 -0.35 -0.70 16 14 C -0.14 -2.57 9.70 -39.58 -0.38 -2.96 16 15 C 0.03 0.56 5.07 -104.62 -0.53 0.03 16 16 C 0.04 0.95 5.10 -29.03 -0.15 0.80 16 17 C -0.52 -13.91 9.09 -34.44 -0.31 -14.22 16 18 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 20 N -0.89 -25.42 13.29 55.43 0.74 -24.68 16 21 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 C -0.14 -2.61 9.70 -39.59 -0.38 -3.00 16 26 C -0.02 -0.34 9.07 -39.58 -0.36 -0.70 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.68 6.98 -51.93 -0.36 0.32 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.66 6.23 -51.93 -0.32 0.33 16 38 H 0.06 0.67 7.80 -51.93 -0.41 0.26 16 39 H 0.42 3.02 8.96 -34.47 -0.31 2.71 16 40 H 0.13 1.66 7.52 -52.48 -0.39 1.27 16 41 H 0.13 2.17 8.06 -52.49 -0.42 1.74 16 42 H 0.03 0.86 8.09 -51.93 -0.42 0.44 16 43 H 0.03 0.86 8.09 -51.93 -0.42 0.44 16 44 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 45 H 0.13 2.21 8.06 -52.48 -0.42 1.79 16 46 H 0.13 1.80 7.56 -52.48 -0.40 1.40 16 LS Contribution 384.71 15.07 5.80 5.80 Total: -1.00 -31.73 384.71 -11.18 -42.91 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -7.60 Total: 1.36 kcal Atomic # 6 Polarization: -31.80 SS G_CDS: -2.60 Total: -34.40 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.72 Total: -35.18 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: -1.87 Total: -32.11 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 36.17 SS G_CDS: -0.60 Total: 35.57 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.73 -11.18 -42.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884982807.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.709 kcal (2) G-P(sol) polarization free energy of solvation -31.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds