Wall clock time and date at job start Tue Mar 31 2020 15:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47112 * 2 1 4 4 C 1.53001 * 109.47463 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.46906 * 54.99816 * 4 3 2 6 6 C 1.52993 * 109.47412 * 175.00197 * 4 3 2 7 7 C 1.53007 * 109.47237 * 185.38867 * 6 4 3 8 8 N 1.46502 * 109.47231 * 295.00348 * 4 3 2 9 9 S 1.65599 * 120.00307 * 114.71046 * 8 4 3 10 10 O 1.42095 * 106.40504 * 178.72162 * 9 8 4 11 11 O 1.42102 * 106.39932 * 311.64605 * 9 8 4 12 12 C 1.76197 * 107.21432 * 65.18030 * 9 8 4 13 13 C 1.38227 * 120.00510 * 272.49098 * 12 9 8 14 14 C 1.38238 * 120.00518 * 179.74539 * 13 12 9 15 15 C 1.38234 * 119.99310 * 0.53018 * 14 13 12 16 16 C 1.50709 * 119.99978 * 179.76810 * 15 14 13 17 17 C 1.50704 * 109.46828 * 269.97757 * 16 15 14 18 18 H 1.07996 * 120.00166 * 0.02562 * 17 16 15 19 19 C 1.37876 * 119.99415 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00565 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99778 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.46836 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47160 * 120.00464 * 21 19 17 24 24 H 1.48502 * 109.46797 * 240.00102 * 21 19 17 25 25 C 1.38238 * 120.00383 * 359.74513 * 15 14 13 26 26 C 1.38227 * 119.99843 * 359.97438 * 25 15 14 27 27 H 1.08995 * 109.47376 * 59.99228 * 1 2 3 28 28 H 1.09002 * 109.47048 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46701 * 299.99800 * 1 2 3 30 30 H 1.09003 * 109.46340 * 240.00595 * 2 1 3 31 31 H 1.08997 * 109.47450 * 120.00239 * 2 1 3 32 32 H 1.09004 * 109.47174 * 60.00490 * 3 2 1 33 33 H 1.09003 * 109.47645 * 300.00912 * 3 2 1 34 34 H 1.09002 * 109.47208 * 305.38305 * 6 4 3 35 35 H 1.09002 * 109.47294 * 65.38875 * 6 4 3 36 36 H 1.08996 * 109.47229 * 183.79238 * 7 6 4 37 37 H 1.08995 * 109.46973 * 303.79565 * 7 6 4 38 38 H 1.08997 * 109.46876 * 63.79464 * 7 6 4 39 39 H 0.97002 * 119.99403 * 294.71899 * 8 4 3 40 40 H 1.08005 * 120.00145 * 359.97438 * 13 12 9 41 41 H 1.07994 * 120.00610 * 180.29456 * 14 13 12 42 42 H 1.08998 * 109.46587 * 29.97838 * 16 15 14 43 43 H 1.09001 * 109.46978 * 149.97618 * 16 15 14 44 44 H 0.96995 * 120.00503 * 179.97438 * 20 19 17 45 45 H 1.08008 * 119.99971 * 179.97438 * 25 15 14 46 46 H 1.08008 * 120.00131 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8532 -0.8427 6 6 4.0799 2.8795 -0.1263 7 6 5.6039 2.8699 -0.2621 8 7 4.0589 0.8586 1.2508 9 16 4.9003 -0.5676 1.2261 10 8 5.2556 -0.8473 2.5731 11 8 4.1483 -1.4630 0.4185 12 6 6.4084 -0.2684 0.3655 13 6 6.4564 -0.3960 -1.0100 14 6 7.6383 -0.1562 -1.6857 15 6 8.7750 0.2006 -0.9846 16 6 10.0649 0.4570 -1.7206 17 6 10.8434 -0.8285 -1.8325 18 1 10.4439 -1.7400 -1.4131 19 6 12.0652 -0.8410 -2.4714 20 7 12.5514 0.2688 -2.9826 21 14 13.0299 -2.4346 -2.6107 22 1 12.2707 -3.5314 -1.9584 23 1 13.2408 -2.7618 -4.0437 24 1 14.3456 -2.2769 -1.9402 25 6 8.7285 0.3227 0.3916 26 6 7.5452 0.0885 1.0666 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8932 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6766 1.9564 -0.8899 34 1 3.6396 3.3455 -1.0079 35 1 3.7979 3.4442 0.7624 36 1 5.9732 3.8952 -0.2839 37 1 6.0410 2.3442 0.5868 38 1 5.8831 2.3634 -1.1860 39 1 3.8897 1.3073 2.0940 40 1 5.5695 -0.6795 -1.5574 41 1 7.6746 -0.2513 -2.7609 42 1 9.8445 0.8364 -2.7184 43 1 10.6549 1.1928 -1.1742 44 1 13.4111 0.2601 -3.4317 45 1 9.6167 0.6011 0.9393 46 1 7.5087 0.1843 2.1418 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884982807.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:09 Heat of formation + Delta-G solvation = -105.515831 kcal Electronic energy + Delta-G solvation = -26192.424388 eV Core-core repulsion = 22592.769926 eV Total energy + Delta-G solvation = -3599.654462 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.25131 -38.89583 -38.13632 -36.92642 -35.60431 -34.51849 -33.30835 -32.58362 -31.93912 -29.26588 -29.12644 -25.58589 -24.96857 -23.73226 -22.45624 -21.99625 -21.82950 -20.62522 -19.02059 -18.59444 -18.32456 -17.29604 -16.85614 -16.48873 -15.98972 -15.81403 -15.66396 -15.26275 -15.16698 -15.05279 -14.61958 -14.44096 -14.13026 -13.91456 -13.60285 -13.41881 -13.39903 -13.27836 -13.13659 -13.09890 -12.85664 -12.69091 -12.64439 -12.55399 -12.25277 -12.03172 -12.01248 -11.83629 -11.75289 -11.64141 -11.57008 -11.38662 -11.34498 -10.66309 -10.33520 -9.91653 -9.89784 -8.27650 -6.40150 -0.57549 -0.02644 0.42843 1.36386 1.38066 1.50616 2.06298 2.34564 2.59664 2.86657 3.05068 3.36069 3.68699 3.89720 3.97934 4.12345 4.13739 4.18106 4.34964 4.38330 4.44787 4.49553 4.50945 4.61449 4.70241 4.84178 4.88774 4.92717 4.95072 5.03884 5.12587 5.14168 5.15402 5.23478 5.26483 5.26810 5.35690 5.36722 5.37983 5.51982 5.57245 5.62146 5.67180 5.88769 5.94444 6.10515 6.20542 6.72124 7.29053 8.82565 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.020885 B = 0.003099 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.322565 B = 9034.025083 C = 9347.946445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.133 4.133 3 C -0.122 4.122 4 C 0.147 3.853 5 H 0.083 0.917 6 C -0.123 4.123 7 C -0.164 4.164 8 N -1.095 6.095 9 S 2.716 3.284 10 O -0.993 6.993 11 O -0.975 6.975 12 C -0.695 4.695 13 C -0.014 4.014 14 C -0.151 4.151 15 C 0.000 4.000 16 C 0.049 3.951 17 C -0.532 4.532 18 H 0.053 0.947 19 C 0.010 3.990 20 N -0.925 5.925 21 Si 0.963 3.037 22 H -0.268 1.268 23 H -0.275 1.275 24 H -0.276 1.276 25 C -0.153 4.153 26 C -0.018 4.018 27 H 0.062 0.938 28 H 0.047 0.953 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.055 0.945 37 H 0.050 0.950 38 H 0.043 0.957 39 H 0.429 0.571 40 H 0.153 0.847 41 H 0.128 0.872 42 H 0.013 0.987 43 H 0.012 0.988 44 H 0.267 0.733 45 H 0.126 0.874 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.830 6.018 6.922 24.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.171 4.171 3 C -0.161 4.161 4 C 0.040 3.960 5 H 0.101 0.899 6 C -0.161 4.161 7 C -0.222 4.222 8 N -0.858 5.858 9 S 2.806 3.194 10 O -0.983 6.983 11 O -0.965 6.965 12 C -0.782 4.782 13 C -0.034 4.034 14 C -0.170 4.170 15 C 0.000 4.000 16 C 0.012 3.988 17 C -0.570 4.570 18 H 0.071 0.929 19 C -0.189 4.189 20 N -0.565 5.565 21 Si 0.788 3.212 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.201 1.201 25 C -0.172 4.172 26 C -0.037 4.037 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.266 0.734 40 H 0.170 0.830 41 H 0.146 0.854 42 H 0.031 0.969 43 H 0.030 0.970 44 H 0.076 0.924 45 H 0.144 0.856 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -22.921 5.205 7.021 24.531 hybrid contribution 1.804 -0.177 -0.382 1.853 sum -21.117 5.028 6.639 22.700 Atomic orbital electron populations 1.21768 0.95148 1.01540 1.02318 1.21596 0.96365 0.97190 1.01914 1.21982 0.93075 0.96813 1.04235 1.21093 0.95076 0.95386 0.84401 0.89895 1.21860 0.95019 0.95230 1.04040 1.21911 0.96905 1.01742 1.01594 1.55306 1.70428 1.44019 1.15998 1.01033 0.72870 0.73251 0.72247 1.93528 1.84647 1.84022 1.36093 1.93562 1.69628 1.62197 1.71081 1.30739 1.20392 1.20890 1.06149 1.20945 0.98332 0.91943 0.92130 1.21244 0.92634 1.02454 1.00687 1.20746 0.95433 0.89220 0.94627 1.18254 0.89576 0.96454 0.94535 1.21321 1.03918 0.94861 1.36880 0.92884 1.25849 0.98450 0.99887 0.94734 1.70054 1.19849 1.28535 1.38053 0.85425 0.78393 0.79278 0.78152 1.19236 1.20021 1.20101 1.21244 0.98622 1.03416 0.93943 1.20940 0.91000 0.91661 1.00111 0.91890 0.93420 0.92160 0.92576 0.93362 0.89884 0.89094 0.89276 0.89755 0.92544 0.93110 0.93755 0.73410 0.82962 0.85450 0.96857 0.97017 0.92393 0.85645 0.83229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.91 71.98 0.71 -1.30 16 2 C -0.13 -2.20 5.11 30.59 0.16 -2.04 16 3 C -0.12 -1.42 4.89 30.59 0.15 -1.27 16 4 C 0.15 2.10 2.26 44.99 0.10 2.21 16 5 H 0.08 1.33 7.25 -2.39 -0.02 1.32 16 6 C -0.12 -1.52 5.61 30.59 0.17 -1.35 16 7 C -0.16 -3.06 9.55 71.98 0.69 -2.38 16 8 N -1.09 -17.84 4.25 -169.39 -0.72 -18.56 16 9 S 2.72 67.85 5.59 -56.49 -0.32 67.53 16 10 O -0.99 -29.98 17.22 -128.00 -2.20 -32.18 16 11 O -0.97 -28.06 15.48 -128.00 -1.98 -30.05 16 12 C -0.69 -20.00 4.73 22.27 0.11 -19.89 16 13 C -0.01 -0.43 8.85 22.27 0.20 -0.23 16 14 C -0.15 -5.46 9.70 22.27 0.22 -5.25 16 15 C 0.00 0.00 5.07 -19.86 -0.10 -0.10 16 16 C 0.05 2.48 5.10 29.11 0.15 2.63 16 17 C -0.53 -29.59 9.09 25.60 0.23 -29.35 16 18 H 0.05 2.95 7.74 -2.91 -0.02 2.92 16 19 C 0.01 0.54 5.46 84.65 0.46 1.00 16 20 N -0.93 -54.18 13.29 21.45 0.28 -53.89 16 21 Si 0.96 43.69 29.54 68.60 2.03 45.72 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 23 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 24 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 25 C -0.15 -5.66 9.70 22.27 0.22 -5.44 16 26 C -0.02 -0.56 9.07 22.27 0.20 -0.35 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.05 0.94 6.98 -2.39 -0.02 0.92 16 32 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.05 1.02 6.23 -2.39 -0.01 1.01 16 38 H 0.04 0.95 7.80 -2.39 -0.02 0.93 16 39 H 0.43 4.92 8.96 -96.74 -0.87 4.05 16 40 H 0.15 3.73 7.52 -2.91 -0.02 3.71 16 41 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 42 H 0.01 0.71 8.09 -2.39 -0.02 0.69 16 43 H 0.01 0.62 8.09 -2.39 -0.02 0.61 16 44 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 45 H 0.13 4.54 8.06 -2.91 -0.02 4.51 16 46 H 0.15 3.96 7.56 -2.91 -0.02 3.93 16 Total: -1.00 -69.25 384.71 0.84 -68.42 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: 0.09 Total: 16.13 kcal Atomic # 6 Polarization: -66.78 SS G_CDS: 3.66 Total: -63.12 kcal Atomic # 7 Polarization: -72.01 SS G_CDS: -0.43 Total: -72.45 kcal Atomic # 8 Polarization: -58.04 SS G_CDS: -4.19 Total: -62.23 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: 67.85 SS G_CDS: -0.32 Total: 67.53 kcal Total: -69.25 0.84 -68.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884982807.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.100 kcal (2) G-P(sol) polarization free energy of solvation -69.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds