Wall clock time and date at job start Tue Mar 31 2020 14:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46496 * 119.99759 * 2 1 4 4 C 1.53002 * 109.47623 * 84.99672 * 3 2 1 5 5 C 1.53003 * 109.46675 * 59.99560 * 4 3 2 6 6 C 1.52995 * 109.47532 * 179.97438 * 4 3 2 7 7 C 1.52997 * 109.46860 * 300.00387 * 4 3 2 8 8 S 1.65599 * 120.00145 * 179.97438 * 2 1 3 9 9 O 1.42101 * 106.40069 * 203.54073 * 8 2 1 10 10 O 1.42101 * 106.40241 * 336.46277 * 8 2 1 11 11 C 1.76196 * 107.21563 * 90.00239 * 8 2 1 12 12 C 1.38243 * 120.00177 * 269.72490 * 11 8 2 13 13 C 1.38229 * 119.99864 * 179.76768 * 12 11 8 14 14 C 1.38234 * 120.00369 * 0.50914 * 13 12 11 15 15 C 1.50697 * 120.00261 * 179.72611 * 14 13 12 16 16 C 1.50703 * 109.47182 * 270.02234 * 15 14 13 17 17 H 1.08002 * 119.99482 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99970 * 180.02562 * 16 15 14 19 19 N 1.31521 * 119.99709 * 179.97438 * 18 16 15 20 20 Si 1.86790 * 120.00387 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47376 * 90.00133 * 20 18 16 22 22 H 1.48500 * 109.47474 * 210.00104 * 20 18 16 23 23 H 1.48508 * 109.47216 * 330.00268 * 20 18 16 24 24 C 1.38235 * 119.99797 * 359.74343 * 14 13 12 25 25 C 1.38234 * 120.00193 * 90.00169 * 11 8 2 26 26 H 1.09001 * 109.47060 * 90.00688 * 1 2 3 27 27 H 1.09004 * 109.47073 * 210.00177 * 1 2 3 28 28 H 1.09000 * 109.47212 * 330.00260 * 1 2 3 29 29 H 1.08995 * 109.47319 * 204.99907 * 3 2 1 30 30 H 1.09007 * 109.47165 * 324.99657 * 3 2 1 31 31 H 1.09004 * 109.46810 * 60.00937 * 5 4 3 32 32 H 1.09005 * 109.46826 * 179.97438 * 5 4 3 33 33 H 1.08998 * 109.47498 * 300.00364 * 5 4 3 34 34 H 1.09000 * 109.46839 * 59.99856 * 6 4 3 35 35 H 1.08993 * 109.47272 * 180.02562 * 6 4 3 36 36 H 1.08997 * 109.46871 * 300.00102 * 6 4 3 37 37 H 1.08998 * 109.47443 * 59.99556 * 7 4 3 38 38 H 1.09004 * 109.47254 * 179.97438 * 7 4 3 39 39 H 1.09002 * 109.47232 * 299.99073 * 7 4 3 40 40 H 1.07998 * 119.99588 * 0.02562 * 12 11 8 41 41 H 1.08007 * 119.99880 * 180.23406 * 13 12 11 42 42 H 1.08999 * 109.47221 * 30.01780 * 15 14 13 43 43 H 1.08997 * 109.47462 * 150.02119 * 15 14 13 44 44 H 0.97001 * 119.99934 * 180.02562 * 19 18 16 45 45 H 1.08002 * 120.00150 * 179.97438 * 24 14 13 46 46 H 1.07999 * 120.00073 * 359.97438 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3436 1.7734 1.4370 5 6 3.1119 0.7409 2.2644 6 6 3.1091 3.0981 1.4370 7 6 0.9564 1.9853 2.0465 8 16 2.2931 -1.4341 0.0006 9 8 3.5760 -1.1564 0.5450 10 8 1.4114 -2.4063 0.5455 11 6 2.5539 -1.8864 -1.6822 12 6 1.6222 -2.6673 -2.3405 13 6 1.8245 -3.0181 -3.6621 14 6 2.9636 -2.5970 -4.3225 15 6 3.1871 -2.9846 -5.7615 16 6 3.9400 -4.2888 -5.8193 17 1 4.2282 -4.7869 -4.9053 18 6 4.2619 -4.8456 -7.0388 19 7 4.9194 -5.9835 -7.0892 20 14 3.7641 -3.9838 -8.6195 21 1 4.8444 -3.0550 -9.0384 22 1 3.5394 -4.9940 -9.6846 23 1 2.5126 -3.2172 -8.3925 24 6 3.8978 -1.8206 -3.6627 25 6 3.6930 -1.4653 -2.3425 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 3.1857 1.1178 -0.4343 30 1 1.6501 2.0043 -0.5895 31 1 4.1002 0.5900 1.8301 32 1 3.2164 1.1007 3.2881 33 1 2.5669 -0.2031 2.2644 34 1 2.5621 3.8338 0.8474 35 1 3.2135 3.4574 2.4607 36 1 4.0973 2.9466 1.0029 37 1 0.4114 1.0413 2.0466 38 1 1.0604 2.3445 3.0704 39 1 0.4090 2.7209 1.4571 40 1 0.7343 -2.9997 -1.8233 41 1 1.0948 -3.6250 -4.1775 42 1 2.2249 -3.0982 -6.2608 43 1 3.7664 -2.2082 -6.2612 44 1 5.1461 -6.3750 -7.9473 45 1 4.7880 -1.4919 -4.1785 46 1 4.4228 -0.8587 -1.8271 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884997071.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:45 Heat of formation + Delta-G solvation = -58.723633 kcal Electronic energy + Delta-G solvation = -26196.812425 eV Core-core repulsion = 22599.187025 eV Total energy + Delta-G solvation = -3597.625400 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -38.88417 -38.75895 -37.17327 -35.75836 -34.46506 -33.68269 -31.74190 -30.64405 -28.41134 -27.98989 -27.39206 -27.13928 -24.61167 -23.47397 -22.41733 -20.70316 -19.55780 -18.72910 -17.86946 -17.39154 -16.91783 -16.28440 -15.61159 -15.11530 -15.00094 -14.59219 -14.31137 -14.27841 -13.88366 -13.77813 -13.49376 -13.22266 -13.17483 -12.78033 -12.60403 -12.53179 -12.36493 -12.17862 -12.00943 -11.89916 -11.79048 -11.77105 -11.69274 -11.40146 -11.28388 -10.93968 -10.90816 -10.81440 -10.71718 -10.53088 -10.23736 -10.08503 -9.55665 -9.13837 -8.71122 -8.63819 -8.43819 -6.19225 -4.20803 0.45766 1.27179 1.73183 2.98087 3.19489 3.28013 3.28803 3.76638 4.04317 4.29897 4.35074 4.47639 4.52963 4.66548 4.82345 5.07196 5.15366 5.17880 5.21393 5.23875 5.28416 5.37486 5.47369 5.52790 5.56667 5.57692 5.58968 5.72373 5.73222 5.76307 5.82263 5.84409 5.90598 6.01385 6.12839 6.16163 6.24226 6.33559 6.40117 6.50064 6.69614 6.70560 6.80627 7.29347 7.29725 7.52998 8.33969 8.84450 9.38969 10.93333 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.025374 B = 0.002914 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.206491 B = 9607.594118 C = 9782.362357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.999 5.999 3 C 0.134 3.866 4 C -0.090 4.090 5 C -0.138 4.138 6 C -0.139 4.139 7 C -0.147 4.147 8 S 2.692 3.308 9 O -0.954 6.954 10 O -0.964 6.964 11 C -0.702 4.702 12 C -0.023 4.023 13 C -0.143 4.143 14 C 0.030 3.970 15 C 0.006 3.994 16 C -0.520 4.520 17 H 0.075 0.925 18 C 0.072 3.928 19 N -0.894 5.894 20 Si 0.879 3.121 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.265 1.265 24 C -0.143 4.143 25 C -0.023 4.023 26 H 0.055 0.945 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.050 0.950 33 H 0.040 0.960 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.130 0.870 41 H 0.130 0.870 42 H 0.034 0.966 43 H 0.029 0.971 44 H 0.266 0.734 45 H 0.129 0.871 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.807 18.736 15.498 25.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.836 5.836 3 C 0.009 3.991 4 C -0.091 4.091 5 C -0.196 4.196 6 C -0.197 4.197 7 C -0.204 4.204 8 S 2.785 3.215 9 O -0.945 6.945 10 O -0.955 6.955 11 C -0.791 4.791 12 C -0.043 4.043 13 C -0.162 4.162 14 C 0.030 3.970 15 C -0.031 4.031 16 C -0.558 4.558 17 H 0.093 0.907 18 C -0.130 4.130 19 N -0.532 5.532 20 Si 0.706 3.294 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.189 1.189 24 C -0.162 4.162 25 C -0.042 4.042 26 H 0.073 0.927 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.148 0.852 41 H 0.147 0.853 42 H 0.052 0.948 43 H 0.047 0.953 44 H 0.076 0.924 45 H 0.147 0.853 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.494 18.136 16.105 25.699 hybrid contribution -0.194 0.234 -1.758 1.784 sum -8.689 18.370 14.348 24.876 Atomic orbital electron populations 1.21802 0.78564 1.04392 1.02276 1.57398 1.15115 1.21203 1.89839 1.21390 0.96628 0.84965 0.96149 1.21007 0.96166 0.96127 0.95838 1.22010 1.01439 0.96986 0.99134 1.21807 1.00169 0.95699 1.02036 1.22063 0.96096 1.01838 1.00413 1.01890 0.73297 0.72131 0.74147 1.93592 1.40208 1.84138 1.76533 1.93541 1.66393 1.58392 1.77154 1.30504 1.05668 1.17076 1.25850 1.20769 0.96511 0.92616 0.94396 1.21217 0.98965 1.01557 0.94436 1.20691 0.90785 0.87717 0.97849 1.18980 0.98169 0.98020 0.87911 1.20826 1.36177 1.04031 0.94759 0.90668 1.24988 0.94351 0.94694 0.99012 1.69893 1.39199 1.18164 1.25954 0.86785 0.79680 0.79672 0.83250 1.20028 1.21060 1.18938 1.21222 1.00029 1.00476 0.94502 1.20761 0.93818 0.95282 0.94367 0.92675 0.89988 0.89873 0.89796 0.90260 0.90261 0.93103 0.94059 0.92608 0.92368 0.92185 0.91742 0.92790 0.92705 0.85234 0.85254 0.94817 0.95251 0.92361 0.85257 0.85173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.61 9.57 59.85 0.57 1.19 16 2 N -1.00 -10.24 2.61 -121.75 -0.32 -10.55 16 3 C 0.13 1.17 4.61 -4.04 -0.02 1.15 16 4 C -0.09 -0.74 0.84 -154.51 -0.13 -0.87 16 5 C -0.14 -1.45 6.85 37.16 0.25 -1.19 16 6 C -0.14 -0.94 8.47 37.16 0.31 -0.63 16 7 C -0.15 -1.05 7.14 37.16 0.27 -0.79 16 8 S 2.69 37.61 4.71 -107.50 -0.51 37.10 16 9 O -0.95 -14.51 12.69 -57.17 -0.73 -15.23 16 10 O -0.96 -15.69 15.88 -57.17 -0.91 -16.60 16 11 C -0.70 -11.09 5.97 -39.58 -0.24 -11.32 16 12 C -0.02 -0.38 9.52 -39.58 -0.38 -0.76 16 13 C -0.14 -2.62 9.70 -39.59 -0.38 -3.00 16 14 C 0.03 0.60 5.07 -104.63 -0.53 0.07 16 15 C 0.01 0.14 4.17 -29.04 -0.12 0.02 16 16 C -0.52 -14.36 9.65 -34.44 -0.33 -14.69 16 17 H 0.08 2.30 7.98 -52.49 -0.42 1.88 16 18 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 19 N -0.89 -26.88 13.96 55.43 0.77 -26.10 16 20 Si 0.88 20.64 27.47 -169.99 -4.67 15.97 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 23 H -0.26 -5.89 6.54 56.52 0.37 -5.52 16 24 C -0.14 -2.60 9.70 -39.58 -0.38 -2.99 16 25 C -0.02 -0.37 9.52 -39.58 -0.38 -0.74 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.08 0.72 7.02 -51.93 -0.36 0.36 16 28 H 0.08 0.51 5.44 -51.93 -0.28 0.23 16 29 H 0.08 0.74 7.61 -51.93 -0.40 0.35 16 30 H 0.08 0.54 8.11 -51.93 -0.42 0.12 16 31 H 0.08 0.92 7.06 -51.93 -0.37 0.55 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.04 0.49 5.96 -51.93 -0.31 0.18 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.49 5.62 -51.93 -0.29 0.20 16 38 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.05 0.33 8.04 -51.93 -0.42 -0.09 16 40 H 0.13 1.83 7.61 -52.49 -0.40 1.43 16 41 H 0.13 2.21 8.06 -52.48 -0.42 1.79 16 42 H 0.03 0.75 7.14 -51.93 -0.37 0.38 16 43 H 0.03 0.64 7.51 -51.93 -0.39 0.25 16 44 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 45 H 0.13 2.19 8.06 -52.49 -0.42 1.76 16 46 H 0.13 1.76 7.62 -52.49 -0.40 1.36 16 LS Contribution 370.36 15.07 5.58 5.58 Total: -1.00 -32.78 370.36 -9.73 -42.51 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -7.38 Total: -0.05 kcal Atomic # 6 Polarization: -31.05 SS G_CDS: -1.58 Total: -32.63 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.46 Total: -36.66 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -1.63 Total: -31.83 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.67 Total: 15.97 kcal Atomic # 16 Polarization: 37.61 SS G_CDS: -0.51 Total: 37.10 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.78 -9.73 -42.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884997071.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.212 kcal (2) G-P(sol) polarization free energy of solvation -32.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds