Wall clock time and date at job start Tue Mar 31 2020 14:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46496 * 119.99759 * 2 1 4 4 C 1.53002 * 109.47623 * 84.99672 * 3 2 1 5 5 C 1.53003 * 109.46675 * 59.99560 * 4 3 2 6 6 C 1.52995 * 109.47532 * 179.97438 * 4 3 2 7 7 C 1.52997 * 109.46860 * 300.00387 * 4 3 2 8 8 S 1.65599 * 120.00145 * 179.97438 * 2 1 3 9 9 O 1.42101 * 106.40069 * 203.54073 * 8 2 1 10 10 O 1.42101 * 106.40241 * 336.46277 * 8 2 1 11 11 C 1.76196 * 107.21563 * 90.00239 * 8 2 1 12 12 C 1.38243 * 120.00177 * 269.72490 * 11 8 2 13 13 C 1.38229 * 119.99864 * 179.76768 * 12 11 8 14 14 C 1.38234 * 120.00369 * 0.50914 * 13 12 11 15 15 C 1.50697 * 120.00261 * 179.72611 * 14 13 12 16 16 C 1.50703 * 109.47182 * 270.02234 * 15 14 13 17 17 H 1.08002 * 119.99482 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99970 * 180.02562 * 16 15 14 19 19 N 1.31521 * 119.99709 * 179.97438 * 18 16 15 20 20 Si 1.86790 * 120.00387 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47376 * 90.00133 * 20 18 16 22 22 H 1.48500 * 109.47474 * 210.00104 * 20 18 16 23 23 H 1.48508 * 109.47216 * 330.00268 * 20 18 16 24 24 C 1.38235 * 119.99797 * 359.74343 * 14 13 12 25 25 C 1.38234 * 120.00193 * 90.00169 * 11 8 2 26 26 H 1.09001 * 109.47060 * 90.00688 * 1 2 3 27 27 H 1.09004 * 109.47073 * 210.00177 * 1 2 3 28 28 H 1.09000 * 109.47212 * 330.00260 * 1 2 3 29 29 H 1.08995 * 109.47319 * 204.99907 * 3 2 1 30 30 H 1.09007 * 109.47165 * 324.99657 * 3 2 1 31 31 H 1.09004 * 109.46810 * 60.00937 * 5 4 3 32 32 H 1.09005 * 109.46826 * 179.97438 * 5 4 3 33 33 H 1.08998 * 109.47498 * 300.00364 * 5 4 3 34 34 H 1.09000 * 109.46839 * 59.99856 * 6 4 3 35 35 H 1.08993 * 109.47272 * 180.02562 * 6 4 3 36 36 H 1.08997 * 109.46871 * 300.00102 * 6 4 3 37 37 H 1.08998 * 109.47443 * 59.99556 * 7 4 3 38 38 H 1.09004 * 109.47254 * 179.97438 * 7 4 3 39 39 H 1.09002 * 109.47232 * 299.99073 * 7 4 3 40 40 H 1.07998 * 119.99588 * 0.02562 * 12 11 8 41 41 H 1.08007 * 119.99880 * 180.23406 * 13 12 11 42 42 H 1.08999 * 109.47221 * 30.01780 * 15 14 13 43 43 H 1.08997 * 109.47462 * 150.02119 * 15 14 13 44 44 H 0.97001 * 119.99934 * 180.02562 * 19 18 16 45 45 H 1.08002 * 120.00150 * 179.97438 * 24 14 13 46 46 H 1.07999 * 120.00073 * 359.97438 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3436 1.7734 1.4370 5 6 3.1119 0.7409 2.2644 6 6 3.1091 3.0981 1.4370 7 6 0.9564 1.9853 2.0465 8 16 2.2931 -1.4341 0.0006 9 8 3.5760 -1.1564 0.5450 10 8 1.4114 -2.4063 0.5455 11 6 2.5539 -1.8864 -1.6822 12 6 1.6222 -2.6673 -2.3405 13 6 1.8245 -3.0181 -3.6621 14 6 2.9636 -2.5970 -4.3225 15 6 3.1871 -2.9846 -5.7615 16 6 3.9400 -4.2888 -5.8193 17 1 4.2282 -4.7869 -4.9053 18 6 4.2619 -4.8456 -7.0388 19 7 4.9194 -5.9835 -7.0892 20 14 3.7641 -3.9838 -8.6195 21 1 4.8444 -3.0550 -9.0384 22 1 3.5394 -4.9940 -9.6846 23 1 2.5126 -3.2172 -8.3925 24 6 3.8978 -1.8206 -3.6627 25 6 3.6930 -1.4653 -2.3425 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 3.1857 1.1178 -0.4343 30 1 1.6501 2.0043 -0.5895 31 1 4.1002 0.5900 1.8301 32 1 3.2164 1.1007 3.2881 33 1 2.5669 -0.2031 2.2644 34 1 2.5621 3.8338 0.8474 35 1 3.2135 3.4574 2.4607 36 1 4.0973 2.9466 1.0029 37 1 0.4114 1.0413 2.0466 38 1 1.0604 2.3445 3.0704 39 1 0.4090 2.7209 1.4571 40 1 0.7343 -2.9997 -1.8233 41 1 1.0948 -3.6250 -4.1775 42 1 2.2249 -3.0982 -6.2608 43 1 3.7664 -2.2082 -6.2612 44 1 5.1461 -6.3750 -7.9473 45 1 4.7880 -1.4919 -4.1785 46 1 4.4228 -0.8587 -1.8271 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884997071.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:44 Heat of formation + Delta-G solvation = -78.624873 kcal Electronic energy + Delta-G solvation = -26197.675408 eV Core-core repulsion = 22599.187025 eV Total energy + Delta-G solvation = -3598.488383 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.26978 -39.46299 -38.33681 -36.94584 -35.56289 -35.18635 -33.56079 -31.99372 -29.72851 -29.02693 -28.10866 -27.72713 -25.45318 -25.15787 -23.77053 -22.28880 -20.41733 -19.66657 -19.04329 -18.90599 -18.45420 -17.27837 -16.82945 -16.34179 -16.16291 -15.98897 -15.48328 -15.27245 -15.15105 -14.62303 -14.50629 -14.46343 -14.24897 -14.15918 -13.93434 -13.63529 -13.48818 -13.35851 -13.19448 -13.00176 -12.82199 -12.65258 -12.58576 -12.55233 -12.37091 -12.12978 -12.07371 -11.96983 -11.90636 -11.72064 -11.51443 -11.46473 -11.37929 -10.83897 -10.01758 -9.99146 -9.84508 -8.34882 -6.42488 -0.65230 -0.09226 0.36549 1.35465 1.37369 1.48892 1.97453 2.31734 2.55442 2.76364 2.99468 3.26044 3.76898 3.83373 3.90141 3.94300 4.01574 4.06079 4.17969 4.40514 4.43782 4.58654 4.62640 4.68194 4.76438 4.81583 4.82754 4.84055 4.93291 4.96895 4.98187 5.02646 5.05410 5.07353 5.13797 5.16260 5.21256 5.26445 5.29559 5.43261 5.47839 5.48807 5.60348 5.71127 5.75261 5.91789 6.17623 6.64080 7.21540 8.81691 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.025374 B = 0.002914 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.206491 B = 9607.594118 C = 9782.362357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.988 5.988 3 C 0.124 3.876 4 C -0.088 4.088 5 C -0.142 4.142 6 C -0.137 4.137 7 C -0.147 4.147 8 S 2.708 3.292 9 O -0.968 6.968 10 O -0.988 6.988 11 C -0.702 4.702 12 C -0.026 4.026 13 C -0.154 4.154 14 C -0.003 4.003 15 C 0.012 3.988 16 C -0.528 4.528 17 H 0.025 0.975 18 C 0.009 3.991 19 N -0.948 5.948 20 Si 0.955 3.045 21 H -0.263 1.263 22 H -0.284 1.284 23 H -0.241 1.241 24 C -0.154 4.154 25 C -0.022 4.022 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.109 0.891 29 H 0.081 0.919 30 H 0.107 0.893 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.023 0.977 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.073 0.927 40 H 0.152 0.848 41 H 0.134 0.866 42 H 0.041 0.959 43 H 0.041 0.959 44 H 0.269 0.731 45 H 0.136 0.864 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.442 21.966 15.629 28.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.827 5.827 3 C 0.000 4.000 4 C -0.090 4.090 5 C -0.200 4.200 6 C -0.195 4.195 7 C -0.204 4.204 8 S 2.799 3.201 9 O -0.958 6.958 10 O -0.978 6.978 11 C -0.788 4.788 12 C -0.045 4.045 13 C -0.173 4.173 14 C -0.004 4.004 15 C -0.025 4.025 16 C -0.565 4.565 17 H 0.044 0.956 18 C -0.189 4.189 19 N -0.588 5.588 20 Si 0.777 3.223 21 H -0.188 1.188 22 H -0.209 1.209 23 H -0.164 1.164 24 C -0.173 4.173 25 C -0.041 4.041 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.127 0.873 29 H 0.099 0.901 30 H 0.125 0.875 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.042 0.958 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.169 0.831 41 H 0.152 0.848 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.078 0.922 45 H 0.154 0.846 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -10.132 21.369 16.232 28.684 hybrid contribution 0.321 -0.751 -1.581 1.779 sum -9.811 20.618 14.652 27.130 Atomic orbital electron populations 1.22059 0.76959 1.05356 1.03448 1.57140 1.15985 1.20307 1.89291 1.21683 0.96874 0.84508 0.96963 1.21016 0.96806 0.96082 0.95119 1.22042 1.00709 0.97070 1.00181 1.21790 0.99964 0.95088 1.02630 1.22070 0.95329 1.02106 1.00928 1.01406 0.72945 0.72619 0.73125 1.93577 1.41379 1.84513 1.76368 1.93507 1.66876 1.60205 1.77240 1.30981 1.05098 1.15911 1.26841 1.21027 0.97464 0.92269 0.93746 1.21357 0.98768 1.01736 0.95413 1.20595 0.92612 0.90141 0.97020 1.18822 0.97698 0.95622 0.90325 1.21068 1.36463 1.05962 0.93043 0.95642 1.26024 0.94178 0.95357 1.03316 1.70063 1.41171 1.20360 1.27160 0.85596 0.80463 0.78616 0.77634 1.18782 1.20940 1.16448 1.21379 0.99903 1.00466 0.95514 1.21041 0.94366 0.95065 0.93642 0.91425 0.90763 0.87260 0.90097 0.87473 0.91836 0.92231 0.95835 0.90985 0.91992 0.92586 0.92323 0.92498 0.90821 0.83077 0.84777 0.94061 0.94113 0.92179 0.84635 0.82667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.90 9.57 127.77 1.22 2.12 16 2 N -0.99 -17.96 2.61 -539.11 -1.41 -19.37 16 3 C 0.12 1.81 4.61 86.38 0.40 2.21 16 4 C -0.09 -1.24 0.84 -52.18 -0.04 -1.28 16 5 C -0.14 -2.82 6.85 71.98 0.49 -2.32 16 6 C -0.14 -1.47 8.47 71.98 0.61 -0.86 16 7 C -0.15 -1.64 7.14 71.98 0.51 -1.13 16 8 S 2.71 72.46 4.71 -56.49 -0.27 72.20 16 9 O -0.97 -28.69 12.69 -128.00 -1.62 -30.32 16 10 O -0.99 -31.32 15.88 -128.00 -2.03 -33.35 16 11 C -0.70 -21.40 5.97 22.27 0.13 -21.27 16 12 C -0.03 -0.83 9.52 22.27 0.21 -0.62 16 13 C -0.15 -5.63 9.70 22.27 0.22 -5.41 16 14 C 0.00 -0.14 5.07 -19.87 -0.10 -0.24 16 15 C 0.01 0.57 4.17 29.10 0.12 0.69 16 16 C -0.53 -30.09 9.65 25.60 0.25 -29.84 16 17 H 0.03 1.64 7.98 -2.91 -0.02 1.62 16 18 C 0.01 0.50 5.47 84.65 0.46 0.96 16 19 N -0.95 -58.93 13.96 21.45 0.30 -58.64 16 20 Si 0.95 42.41 27.47 68.60 1.88 44.29 16 21 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 22 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 23 H -0.24 -9.72 6.54 99.48 0.65 -9.07 16 24 C -0.15 -5.55 9.70 22.27 0.22 -5.34 16 25 C -0.02 -0.69 9.52 22.27 0.21 -0.48 16 26 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.07 1.16 7.02 -2.38 -0.02 1.14 16 28 H 0.11 0.94 5.44 -2.39 -0.01 0.92 16 29 H 0.08 1.24 7.61 -2.39 -0.02 1.22 16 30 H 0.11 1.01 8.11 -2.38 -0.02 0.99 16 31 H 0.06 1.44 7.06 -2.38 -0.02 1.42 16 32 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 33 H 0.02 0.53 5.96 -2.39 -0.01 0.51 16 34 H 0.07 0.55 8.14 -2.39 -0.02 0.54 16 35 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.06 0.73 5.62 -2.39 -0.01 0.71 16 38 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 39 H 0.07 0.56 8.04 -2.39 -0.02 0.54 16 40 H 0.15 4.07 7.61 -2.91 -0.02 4.05 16 41 H 0.13 4.61 8.06 -2.91 -0.02 4.58 16 42 H 0.04 1.79 7.14 -2.39 -0.02 1.78 16 43 H 0.04 1.74 7.51 -2.39 -0.02 1.72 16 44 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 45 H 0.14 4.57 8.06 -2.91 -0.02 4.54 16 46 H 0.16 3.95 7.62 -2.91 -0.02 3.93 16 Total: -1.00 -73.35 370.36 2.66 -70.69 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: 0.90 Total: 17.30 kcal Atomic # 6 Polarization: -67.72 SS G_CDS: 4.91 Total: -62.81 kcal Atomic # 7 Polarization: -76.89 SS G_CDS: -1.11 Total: -78.00 kcal Atomic # 8 Polarization: -60.01 SS G_CDS: -3.66 Total: -63.67 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 1.88 Total: 44.29 kcal Atomic # 16 Polarization: 72.46 SS G_CDS: -0.27 Total: 72.20 kcal Total: -73.35 2.66 -70.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884997071.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.936 kcal (2) G-P(sol) polarization free energy of solvation -73.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds