Wall clock time and date at job start Tue Mar 31 2020 14:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47198 * 2 1 4 4 C 1.52996 * 109.47256 * 120.00098 * 2 1 3 5 5 C 1.53008 * 109.47034 * 305.00067 * 4 2 1 6 6 C 1.52994 * 109.47543 * 185.00104 * 4 2 1 7 7 N 1.46499 * 109.47387 * 64.99779 * 4 2 1 8 8 S 1.65596 * 120.00363 * 187.88745 * 7 4 2 9 9 O 1.42103 * 106.40086 * 313.63321 * 8 7 4 10 10 O 1.42100 * 106.40599 * 180.71046 * 8 7 4 11 11 C 1.76201 * 107.21846 * 67.17091 * 8 7 4 12 12 C 1.38239 * 119.99921 * 80.47672 * 11 8 7 13 13 C 1.38237 * 119.99937 * 179.97438 * 12 11 8 14 14 C 1.38234 * 119.99901 * 0.02565 * 13 12 11 15 15 C 1.50700 * 119.99671 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.46956 * 90.00321 * 15 14 13 17 17 H 1.07998 * 119.99991 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99754 * 180.27584 * 16 15 14 19 19 N 1.31511 * 120.00442 * 359.71829 * 18 16 15 20 20 Si 1.86807 * 119.99900 * 179.72221 * 18 16 15 21 21 H 1.48504 * 109.47020 * 59.99933 * 20 18 16 22 22 H 1.48502 * 109.47050 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47009 * 300.00035 * 20 18 16 24 24 C 1.38228 * 120.00178 * 0.25115 * 14 13 12 25 25 C 1.38235 * 120.00033 * 260.50300 * 11 8 7 26 26 H 1.08999 * 109.46975 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47035 * 300.00070 * 1 2 3 28 28 H 1.09006 * 109.47039 * 60.00147 * 1 2 3 29 29 H 1.09000 * 109.47035 * 239.99930 * 2 1 3 30 30 H 1.08997 * 109.47180 * 179.97438 * 3 2 1 31 31 H 1.09006 * 109.47006 * 299.99874 * 3 2 1 32 32 H 1.09004 * 109.47023 * 59.99538 * 3 2 1 33 33 H 1.08992 * 109.47171 * 199.86899 * 5 4 2 34 34 H 1.08999 * 109.46822 * 319.87205 * 5 4 2 35 35 H 1.09001 * 109.47105 * 79.86743 * 5 4 2 36 36 H 1.09002 * 109.47098 * 293.60976 * 6 4 2 37 37 H 1.09001 * 109.47184 * 53.60186 * 6 4 2 38 38 H 1.08997 * 109.47739 * 173.60825 * 6 4 2 39 39 H 0.97006 * 119.99515 * 7.88755 * 7 4 2 40 40 H 1.07999 * 120.00299 * 0.02562 * 12 11 8 41 41 H 1.07995 * 119.99923 * 180.02562 * 13 12 11 42 42 H 1.09002 * 109.47292 * 330.00334 * 15 14 13 43 43 H 1.09001 * 109.46784 * 209.99837 * 15 14 13 44 44 H 0.97003 * 120.00521 * 180.02562 * 19 18 16 45 45 H 1.08000 * 120.00276 * 179.72314 * 24 14 13 46 46 H 1.07997 * 120.00094 * 359.97438 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.4299 -0.0762 2.4953 6 6 3.5648 -0.6133 1.3137 7 7 1.6524 -2.1328 1.1906 8 16 1.9004 -3.1147 2.5008 9 8 3.2247 -2.8597 2.9484 10 8 1.4416 -4.4065 2.1268 11 6 0.8263 -2.5568 3.7814 12 6 -0.5058 -2.9262 3.7761 13 6 -1.3483 -2.4889 4.7810 14 6 -0.8588 -1.6818 5.7909 15 6 -1.7775 -1.2047 6.8861 16 6 -1.7670 -2.1984 8.0190 17 1 -1.1565 -3.0868 7.9524 18 6 -2.5416 -1.9764 9.1379 19 7 -3.2852 -0.8948 9.2189 20 14 -2.5345 -3.2121 10.5389 21 1 -1.1565 -3.3428 11.0766 22 1 -3.4434 -2.7443 11.6160 23 1 -2.9976 -4.5310 10.0379 24 6 0.4719 -1.3077 5.7931 25 6 1.3156 -1.7492 4.7910 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 2.0327 -0.3292 3.3675 34 1 1.4080 1.0063 2.3703 35 1 0.4143 -0.4464 2.6358 36 1 4.0038 -1.1703 0.4860 37 1 3.8582 0.4341 1.2429 38 1 3.9187 -1.0267 2.2581 39 1 1.2506 -2.4923 0.3842 40 1 -0.8881 -3.5571 2.9873 41 1 -2.3889 -2.7778 4.7771 42 1 -2.7906 -1.1101 6.4951 43 1 -1.4364 -0.2354 7.2498 44 1 -3.8299 -0.7385 10.0062 45 1 0.8533 -0.6735 6.5797 46 1 2.3563 -1.4606 4.7951 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884997920.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:20 Heat of formation + Delta-G solvation = -66.327792 kcal Electronic energy + Delta-G solvation = -26638.277324 eV Core-core repulsion = 23040.322183 eV Total energy + Delta-G solvation = -3597.955141 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.36253 -38.71287 -37.04784 -35.72192 -33.72690 -33.25148 -31.63756 -30.73106 -30.12016 -28.05125 -27.34846 -26.56154 -23.71429 -23.30082 -22.34688 -20.89442 -19.51057 -19.08744 -17.74981 -17.43723 -16.44448 -16.39953 -15.31756 -15.19635 -14.76271 -14.56428 -14.40536 -14.34297 -13.93309 -13.70329 -13.37682 -13.17564 -13.07661 -12.76339 -12.50716 -12.35690 -12.11014 -11.94999 -11.91137 -11.81766 -11.71214 -11.51391 -11.46354 -11.31934 -11.11768 -11.01651 -10.89869 -10.86886 -10.51045 -10.48519 -10.38115 -9.75686 -9.70061 -9.52671 -8.55563 -8.51981 -8.33401 -6.17262 -4.22309 0.56941 1.34770 1.80425 3.08823 3.25952 3.30100 3.33672 3.79585 4.11770 4.35374 4.37389 4.52126 4.59544 4.71316 4.93991 5.04355 5.15310 5.16600 5.22283 5.23646 5.31121 5.42604 5.52741 5.63969 5.68302 5.72246 5.77317 5.78692 5.81017 5.85418 5.91956 5.92773 6.02804 6.10223 6.25721 6.32207 6.33191 6.38710 6.52589 6.84553 6.89938 6.93166 7.29235 7.43506 7.59441 7.77663 8.13282 8.82283 9.42673 10.92691 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.019094 B = 0.003364 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.064342 B = 8320.639463 C = 8955.684036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.090 4.090 3 C -0.152 4.152 4 C 0.186 3.814 5 C -0.197 4.197 6 C -0.183 4.183 7 N -1.111 6.111 8 S 2.698 3.302 9 O -0.963 6.963 10 O -0.971 6.971 11 C -0.701 4.701 12 C -0.021 4.021 13 C -0.147 4.147 14 C 0.027 3.973 15 C 0.040 3.960 16 C -0.518 4.518 17 H 0.058 0.942 18 C 0.061 3.939 19 N -0.892 5.892 20 Si 0.899 3.101 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.275 1.275 24 C -0.147 4.147 25 C -0.020 4.020 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.414 0.586 40 H 0.125 0.875 41 H 0.127 0.873 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.265 0.735 45 H 0.127 0.873 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.549 4.039 -19.353 21.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.110 4.110 3 C -0.210 4.210 4 C 0.098 3.902 5 C -0.254 4.254 6 C -0.242 4.242 7 N -0.870 5.870 8 S 2.791 3.209 9 O -0.953 6.953 10 O -0.961 6.961 11 C -0.790 4.790 12 C -0.041 4.041 13 C -0.166 4.166 14 C 0.027 3.973 15 C 0.003 3.997 16 C -0.556 4.556 17 H 0.077 0.923 18 C -0.141 4.141 19 N -0.530 5.530 20 Si 0.726 3.274 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.200 1.200 24 C -0.166 4.166 25 C -0.040 4.040 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.108 0.892 39 H 0.248 0.752 40 H 0.143 0.857 41 H 0.145 0.855 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.074 0.926 45 H 0.145 0.855 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 10.096 3.498 -19.034 21.828 hybrid contribution -0.921 -0.391 0.840 1.307 sum 9.175 3.107 -18.193 20.612 Atomic orbital electron populations 1.21915 0.94657 1.02226 1.02179 1.21290 0.96349 0.96482 0.96845 1.22020 1.01509 0.95226 1.02254 1.20135 0.94561 0.79290 0.96241 1.23027 1.02686 1.02661 0.97059 1.22711 0.93977 1.02697 1.04800 1.55735 1.79376 1.21162 1.30684 1.01531 0.74039 0.72395 0.72976 1.93518 1.34989 1.85174 1.81632 1.93567 1.82718 1.36900 1.82914 1.30310 1.10574 1.18405 1.19722 1.20683 0.91259 0.94587 0.97542 1.21208 1.00345 0.99956 0.95043 1.21078 0.94747 0.88701 0.92799 1.18524 0.93459 0.97223 0.90474 1.20937 1.26951 1.06773 1.00963 0.92347 1.24995 0.95031 0.95613 0.98443 1.69933 1.27612 1.25976 1.29487 0.86545 0.78134 0.81362 0.81381 1.20031 1.21113 1.20041 1.21216 0.93788 1.02618 0.98935 1.20762 0.99184 0.92077 0.91941 0.92392 0.91836 0.92734 0.90686 0.91883 0.92473 0.91869 0.90831 0.90306 0.90424 0.92218 0.91183 0.89187 0.75190 0.85732 0.85523 0.94799 0.94766 0.92581 0.85460 0.84994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 8.67 37.16 0.32 -0.83 16 2 C -0.09 -0.66 2.30 -90.62 -0.21 -0.87 16 3 C -0.15 -0.99 8.51 37.16 0.32 -0.68 16 4 C 0.19 1.71 0.61 -131.82 -0.08 1.63 16 5 C -0.20 -2.00 5.60 37.16 0.21 -1.80 16 6 C -0.18 -1.73 7.88 37.15 0.29 -1.44 16 7 N -1.11 -11.14 5.15 0.54 0.00 -11.13 16 8 S 2.70 37.20 5.48 -107.50 -0.59 36.61 16 9 O -0.96 -14.84 14.17 -57.17 -0.81 -15.65 16 10 O -0.97 -16.04 17.56 -57.17 -1.00 -17.05 16 11 C -0.70 -10.68 3.83 -39.58 -0.15 -10.83 16 12 C -0.02 -0.34 9.53 -39.58 -0.38 -0.71 16 13 C -0.15 -2.67 9.70 -39.58 -0.38 -3.05 16 14 C 0.03 0.55 5.07 -104.63 -0.53 0.02 16 15 C 0.04 0.97 5.11 -29.03 -0.15 0.82 16 16 C -0.52 -14.00 9.09 -34.44 -0.31 -14.31 16 17 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -25.45 13.29 55.43 0.74 -24.71 16 20 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 24 C -0.15 -2.64 9.70 -39.58 -0.38 -3.02 16 25 C -0.02 -0.32 6.80 -39.58 -0.27 -0.59 16 26 H 0.06 0.44 7.36 -51.93 -0.38 0.05 16 27 H 0.06 0.53 6.81 -51.93 -0.35 0.17 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.38 6.20 -51.93 -0.32 0.06 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.42 6.24 -51.93 -0.32 0.10 16 33 H 0.07 0.81 4.68 -51.93 -0.24 0.56 16 34 H 0.08 0.68 5.93 -51.93 -0.31 0.38 16 35 H 0.08 0.87 6.29 -51.93 -0.33 0.54 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.54 5.98 -51.93 -0.31 0.23 16 38 H 0.09 1.03 5.74 -51.93 -0.30 0.73 16 39 H 0.41 3.29 8.07 -34.47 -0.28 3.01 16 40 H 0.12 1.70 7.85 -52.49 -0.41 1.29 16 41 H 0.13 2.21 8.06 -52.49 -0.42 1.79 16 42 H 0.03 0.86 8.09 -51.93 -0.42 0.44 16 43 H 0.03 0.86 8.08 -51.93 -0.42 0.44 16 44 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 45 H 0.13 2.19 8.06 -52.49 -0.42 1.77 16 46 H 0.13 1.81 6.63 -52.49 -0.35 1.46 16 LS Contribution 363.05 15.07 5.47 5.47 Total: -1.00 -31.75 363.05 -9.84 -41.59 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -6.82 Total: 2.86 kcal Atomic # 6 Polarization: -32.28 SS G_CDS: -1.81 Total: -34.08 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: 0.74 Total: -35.85 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -1.81 Total: -32.69 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 37.20 SS G_CDS: -0.59 Total: 36.61 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.75 -9.84 -41.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884997920.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.734 kcal (2) G-P(sol) polarization free energy of solvation -31.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds