Wall clock time and date at job start Tue Mar 31 2020 14:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47198 * 2 1 4 4 C 1.52996 * 109.47256 * 120.00098 * 2 1 3 5 5 C 1.53008 * 109.47034 * 305.00067 * 4 2 1 6 6 C 1.52994 * 109.47543 * 185.00104 * 4 2 1 7 7 N 1.46499 * 109.47387 * 64.99779 * 4 2 1 8 8 S 1.65596 * 120.00363 * 187.88745 * 7 4 2 9 9 O 1.42103 * 106.40086 * 313.63321 * 8 7 4 10 10 O 1.42100 * 106.40599 * 180.71046 * 8 7 4 11 11 C 1.76201 * 107.21846 * 67.17091 * 8 7 4 12 12 C 1.38239 * 119.99921 * 80.47672 * 11 8 7 13 13 C 1.38237 * 119.99937 * 179.97438 * 12 11 8 14 14 C 1.38234 * 119.99901 * 0.02565 * 13 12 11 15 15 C 1.50700 * 119.99671 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.46956 * 90.00321 * 15 14 13 17 17 H 1.07998 * 119.99991 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99754 * 180.27584 * 16 15 14 19 19 N 1.31511 * 120.00442 * 359.71829 * 18 16 15 20 20 Si 1.86807 * 119.99900 * 179.72221 * 18 16 15 21 21 H 1.48504 * 109.47020 * 59.99933 * 20 18 16 22 22 H 1.48502 * 109.47050 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47009 * 300.00035 * 20 18 16 24 24 C 1.38228 * 120.00178 * 0.25115 * 14 13 12 25 25 C 1.38235 * 120.00033 * 260.50300 * 11 8 7 26 26 H 1.08999 * 109.46975 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47035 * 300.00070 * 1 2 3 28 28 H 1.09006 * 109.47039 * 60.00147 * 1 2 3 29 29 H 1.09000 * 109.47035 * 239.99930 * 2 1 3 30 30 H 1.08997 * 109.47180 * 179.97438 * 3 2 1 31 31 H 1.09006 * 109.47006 * 299.99874 * 3 2 1 32 32 H 1.09004 * 109.47023 * 59.99538 * 3 2 1 33 33 H 1.08992 * 109.47171 * 199.86899 * 5 4 2 34 34 H 1.08999 * 109.46822 * 319.87205 * 5 4 2 35 35 H 1.09001 * 109.47105 * 79.86743 * 5 4 2 36 36 H 1.09002 * 109.47098 * 293.60976 * 6 4 2 37 37 H 1.09001 * 109.47184 * 53.60186 * 6 4 2 38 38 H 1.08997 * 109.47739 * 173.60825 * 6 4 2 39 39 H 0.97006 * 119.99515 * 7.88755 * 7 4 2 40 40 H 1.07999 * 120.00299 * 0.02562 * 12 11 8 41 41 H 1.07995 * 119.99923 * 180.02562 * 13 12 11 42 42 H 1.09002 * 109.47292 * 330.00334 * 15 14 13 43 43 H 1.09001 * 109.46784 * 209.99837 * 15 14 13 44 44 H 0.97003 * 120.00521 * 180.02562 * 19 18 16 45 45 H 1.08000 * 120.00276 * 179.72314 * 24 14 13 46 46 H 1.07997 * 120.00094 * 359.97438 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.4299 -0.0762 2.4953 6 6 3.5648 -0.6133 1.3137 7 7 1.6524 -2.1328 1.1906 8 16 1.9004 -3.1147 2.5008 9 8 3.2247 -2.8597 2.9484 10 8 1.4416 -4.4065 2.1268 11 6 0.8263 -2.5568 3.7814 12 6 -0.5058 -2.9262 3.7761 13 6 -1.3483 -2.4889 4.7810 14 6 -0.8588 -1.6818 5.7909 15 6 -1.7775 -1.2047 6.8861 16 6 -1.7670 -2.1984 8.0190 17 1 -1.1565 -3.0868 7.9524 18 6 -2.5416 -1.9764 9.1379 19 7 -3.2852 -0.8948 9.2189 20 14 -2.5345 -3.2121 10.5389 21 1 -1.1565 -3.3428 11.0766 22 1 -3.4434 -2.7443 11.6160 23 1 -2.9976 -4.5310 10.0379 24 6 0.4719 -1.3077 5.7931 25 6 1.3156 -1.7492 4.7910 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 2.0327 -0.3292 3.3675 34 1 1.4080 1.0063 2.3703 35 1 0.4143 -0.4464 2.6358 36 1 4.0038 -1.1703 0.4860 37 1 3.8582 0.4341 1.2429 38 1 3.9187 -1.0267 2.2581 39 1 1.2506 -2.4923 0.3842 40 1 -0.8881 -3.5571 2.9873 41 1 -2.3889 -2.7778 4.7771 42 1 -2.7906 -1.1101 6.4951 43 1 -1.4364 -0.2354 7.2498 44 1 -3.8299 -0.7385 10.0062 45 1 0.8533 -0.6735 6.5797 46 1 2.3563 -1.4606 4.7951 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884997920.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:19 Heat of formation + Delta-G solvation = -86.114433 kcal Electronic energy + Delta-G solvation = -26639.135337 eV Core-core repulsion = 23040.322183 eV Total energy + Delta-G solvation = -3598.813154 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.43225 -39.79316 -38.23423 -36.93344 -35.61474 -33.99668 -33.36589 -32.04594 -30.94261 -29.36181 -28.53090 -27.22605 -25.56178 -24.00815 -23.69650 -22.45592 -20.43441 -20.01897 -18.89257 -18.59788 -18.44655 -17.32135 -16.85454 -16.48530 -16.06043 -15.74694 -15.41818 -15.25792 -15.21225 -14.61509 -14.53501 -14.45858 -14.15590 -14.03278 -13.61107 -13.42862 -13.38040 -13.36577 -13.14969 -12.90383 -12.84435 -12.69395 -12.65518 -12.47955 -12.33018 -12.17116 -12.12096 -11.98426 -11.71082 -11.66193 -11.56250 -11.36590 -11.12476 -10.64904 -10.46282 -9.90983 -9.82176 -8.26826 -6.39568 -0.56820 -0.02605 0.43205 1.38381 1.39826 1.48297 2.03823 2.34929 2.58977 2.85155 3.05758 3.37615 3.68013 3.87019 3.93906 3.97992 4.03275 4.17987 4.20680 4.40035 4.48224 4.50164 4.51053 4.66068 4.82055 4.84308 4.91732 4.92698 5.01143 5.05872 5.11530 5.13231 5.14497 5.23996 5.24754 5.26783 5.27490 5.33772 5.36007 5.47176 5.63357 5.67332 5.70997 5.89108 5.94497 6.10951 6.17323 6.72157 7.29483 8.82931 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.019094 B = 0.003364 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.064342 B = 8320.639463 C = 8955.684036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.084 4.084 3 C -0.153 4.153 4 C 0.185 3.815 5 C -0.202 4.202 6 C -0.186 4.186 7 N -1.095 6.095 8 S 2.720 3.280 9 O -0.975 6.975 10 O -0.994 6.994 11 C -0.696 4.696 12 C -0.017 4.017 13 C -0.156 4.156 14 C -0.001 4.001 15 C 0.049 3.951 16 C -0.535 4.535 17 H 0.053 0.947 18 C 0.011 3.989 19 N -0.925 5.925 20 Si 0.962 3.038 21 H -0.269 1.269 22 H -0.279 1.279 23 H -0.269 1.269 24 C -0.154 4.154 25 C -0.011 4.011 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.427 0.573 40 H 0.151 0.849 41 H 0.126 0.874 42 H 0.012 0.988 43 H 0.013 0.987 44 H 0.267 0.733 45 H 0.128 0.872 46 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.893 3.582 -21.132 24.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.104 4.104 3 C -0.211 4.211 4 C 0.097 3.903 5 C -0.260 4.260 6 C -0.245 4.245 7 N -0.858 5.858 8 S 2.811 3.189 9 O -0.965 6.965 10 O -0.984 6.984 11 C -0.783 4.783 12 C -0.036 4.036 13 C -0.175 4.175 14 C -0.001 4.001 15 C 0.012 3.988 16 C -0.573 4.573 17 H 0.072 0.928 18 C -0.188 4.188 19 N -0.564 5.564 20 Si 0.787 3.213 21 H -0.194 1.194 22 H -0.204 1.204 23 H -0.194 1.194 24 C -0.173 4.173 25 C -0.030 4.030 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.106 0.894 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.111 0.889 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.107 0.893 38 H 0.089 0.911 39 H 0.264 0.736 40 H 0.168 0.832 41 H 0.144 0.856 42 H 0.030 0.970 43 H 0.031 0.969 44 H 0.076 0.924 45 H 0.146 0.854 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 11.428 3.038 -20.809 23.934 hybrid contribution -1.275 -0.194 1.257 1.800 sum 10.154 2.844 -19.552 22.214 Atomic orbital electron populations 1.21945 0.94880 1.02236 1.02207 1.21278 0.96087 0.96922 0.96108 1.22038 1.01955 0.94500 1.02588 1.20273 0.94668 0.78509 0.96856 1.23068 1.01796 1.03881 0.97242 1.22731 0.93784 1.03976 1.03968 1.55434 1.79192 1.21345 1.29810 1.00878 0.73249 0.71925 0.72876 1.93513 1.35450 1.85367 1.82189 1.93536 1.82974 1.38716 1.83187 1.30733 1.10632 1.16883 1.20015 1.20915 0.91212 0.94193 0.97247 1.21237 1.00854 1.00029 0.95338 1.20756 0.95178 0.91206 0.93008 1.18247 0.93269 0.95929 0.91341 1.21274 1.26759 1.07094 1.02151 0.92842 1.25846 0.94610 0.97390 1.00995 1.70043 1.28388 1.27661 1.30345 0.85539 0.78407 0.79056 0.78318 1.19373 1.20379 1.19425 1.21234 0.93234 1.02985 0.99824 1.20948 0.99846 0.91295 0.90946 0.92429 0.92882 0.91705 0.89387 0.91206 0.91535 0.92219 0.91751 0.88857 0.91574 0.91578 0.89333 0.91124 0.73612 0.83166 0.85591 0.96988 0.96875 0.92385 0.85449 0.82789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 8.67 71.98 0.62 -1.38 16 2 C -0.08 -0.99 2.30 -10.79 -0.02 -1.02 16 3 C -0.15 -1.55 8.51 71.98 0.61 -0.94 16 4 C 0.18 2.95 0.61 3.60 0.00 2.96 16 5 C -0.20 -3.79 5.60 71.98 0.40 -3.39 16 6 C -0.19 -3.04 7.88 71.98 0.57 -2.47 16 7 N -1.10 -19.27 5.15 -152.22 -0.78 -20.05 16 8 S 2.72 69.61 5.48 -56.49 -0.31 69.30 16 9 O -0.98 -28.16 14.17 -128.00 -1.81 -29.97 16 10 O -0.99 -30.78 17.56 -128.00 -2.25 -33.03 16 11 C -0.70 -20.26 3.83 22.27 0.09 -20.18 16 12 C -0.02 -0.51 9.53 22.27 0.21 -0.30 16 13 C -0.16 -5.73 9.70 22.27 0.22 -5.52 16 14 C 0.00 -0.05 5.07 -19.87 -0.10 -0.15 16 15 C 0.05 2.50 5.11 29.10 0.15 2.65 16 16 C -0.53 -29.79 9.09 25.60 0.23 -29.56 16 17 H 0.05 2.96 7.74 -2.91 -0.02 2.93 16 18 C 0.01 0.60 5.46 84.66 0.46 1.06 16 19 N -0.93 -54.19 13.29 21.45 0.28 -53.90 16 20 Si 0.96 43.63 29.54 68.60 2.03 45.65 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 23 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 24 C -0.15 -5.61 9.70 22.27 0.22 -5.39 16 25 C -0.01 -0.35 6.80 22.27 0.15 -0.20 16 26 H 0.06 0.73 7.36 -2.39 -0.02 0.72 16 27 H 0.05 0.80 6.81 -2.39 -0.02 0.78 16 28 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 29 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.07 0.62 6.20 -2.39 -0.01 0.61 16 31 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 32 H 0.06 0.65 6.24 -2.38 -0.01 0.64 16 33 H 0.06 1.32 4.68 -2.39 -0.01 1.31 16 34 H 0.09 1.46 5.93 -2.39 -0.01 1.45 16 35 H 0.07 1.40 6.29 -2.39 -0.01 1.38 16 36 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.09 1.10 5.98 -2.39 -0.01 1.09 16 38 H 0.07 1.47 5.74 -2.39 -0.01 1.45 16 39 H 0.43 5.55 8.07 -96.74 -0.78 4.76 16 40 H 0.15 3.80 7.85 -2.91 -0.02 3.77 16 41 H 0.13 4.53 8.06 -2.91 -0.02 4.51 16 42 H 0.01 0.64 8.09 -2.39 -0.02 0.62 16 43 H 0.01 0.70 8.08 -2.39 -0.02 0.68 16 44 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 45 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 46 H 0.15 3.99 6.63 -2.91 -0.02 3.97 16 Total: -1.00 -68.63 363.05 1.17 -67.46 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 0.21 Total: 18.36 kcal Atomic # 6 Polarization: -67.63 SS G_CDS: 3.81 Total: -63.82 kcal Atomic # 7 Polarization: -73.46 SS G_CDS: -0.50 Total: -73.95 kcal Atomic # 8 Polarization: -58.94 SS G_CDS: -4.06 Total: -63.00 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: 69.61 SS G_CDS: -0.31 Total: 69.30 kcal Total: -68.63 1.17 -67.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884997920.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.656 kcal (2) G-P(sol) polarization free energy of solvation -68.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds