Wall clock time and date at job start Tue Mar 31 2020 14:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47096 * 2 1 4 4 C 1.53005 * 109.47122 * 65.00168 * 3 2 1 5 5 C 1.52995 * 109.47308 * 58.14744 * 4 3 2 6 6 C 1.53004 * 109.47044 * 185.00010 * 3 2 1 7 7 N 1.46498 * 109.46848 * 175.65490 * 6 3 2 8 8 S 1.65604 * 119.99924 * 165.04511 * 7 6 3 9 9 O 1.42102 * 106.40058 * 311.45406 * 8 7 6 10 10 O 1.42104 * 106.40276 * 178.53745 * 8 7 6 11 11 C 1.76199 * 107.21844 * 64.99474 * 8 7 6 12 12 C 1.38233 * 119.99851 * 90.00345 * 11 8 7 13 13 C 1.38232 * 119.99879 * 179.97438 * 12 11 8 14 14 C 1.38238 * 120.00005 * 0.02562 * 13 12 11 15 15 C 1.50702 * 120.00033 * 179.97438 * 14 13 12 16 16 C 1.50710 * 109.46940 * 90.00299 * 15 14 13 17 17 H 1.08000 * 119.99916 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99712 * 180.27802 * 16 15 14 19 19 N 1.31507 * 120.00556 * 359.72294 * 18 16 15 20 20 Si 1.86804 * 119.99744 * 179.72338 * 18 16 15 21 21 H 1.48505 * 109.47055 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47162 * 119.99526 * 20 18 16 23 23 H 1.48497 * 109.47208 * 240.00009 * 20 18 16 24 24 C 1.38230 * 120.00123 * 0.25343 * 14 13 12 25 25 C 1.38233 * 120.00216 * 270.02062 * 11 8 7 26 26 H 1.09000 * 109.46924 * 300.00154 * 1 2 3 27 27 H 1.08993 * 109.46926 * 59.99670 * 1 2 3 28 28 H 1.08996 * 109.47130 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46924 * 239.99846 * 2 1 3 30 30 H 1.08998 * 109.46949 * 119.99872 * 2 1 3 31 31 H 1.08996 * 109.47327 * 305.00280 * 3 2 1 32 32 H 1.08998 * 109.46899 * 178.14908 * 4 3 2 33 33 H 1.08997 * 109.47204 * 298.14481 * 4 3 2 34 34 H 1.09006 * 109.46873 * 298.77964 * 5 4 3 35 35 H 1.09004 * 109.47243 * 58.77858 * 5 4 3 36 36 H 1.09001 * 109.47281 * 178.77830 * 5 4 3 37 37 H 1.08995 * 109.46833 * 55.65184 * 6 3 2 38 38 H 1.09000 * 109.47062 * 295.65221 * 6 3 2 39 39 H 0.97000 * 120.00263 * 345.03570 * 7 6 3 40 40 H 1.08002 * 120.00483 * 359.97438 * 12 11 8 41 41 H 1.08005 * 120.00298 * 180.02562 * 13 12 11 42 42 H 1.09003 * 109.47206 * 330.00398 * 15 14 13 43 43 H 1.08994 * 109.47398 * 210.00296 * 15 14 13 44 44 H 0.96995 * 120.00835 * 180.02562 * 19 18 16 45 45 H 1.08000 * 120.00547 * 179.72680 * 24 14 13 46 46 H 1.08004 * 119.99997 * 0.02562 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6353 2.1265 1.3074 5 6 2.2070 1.3435 2.4910 6 6 3.5649 1.4443 -0.1257 7 7 4.0445 2.8246 -0.2301 8 16 5.6503 3.1623 -0.0065 9 8 6.0361 2.5021 1.1913 10 8 5.7974 4.5617 -0.2047 11 6 6.5349 2.3789 -1.3135 12 6 6.7677 3.0581 -2.4948 13 6 7.4622 2.4437 -3.5200 14 6 7.9235 1.1499 -3.3641 15 6 8.6801 0.4799 -4.4820 16 6 10.1537 0.7555 -4.3270 17 1 10.5068 1.3562 -3.5018 18 6 11.0502 0.2461 -5.2422 19 7 10.6202 -0.4849 -6.2473 20 14 12.8759 0.5942 -5.0545 21 1 13.0983 1.4350 -3.8507 22 1 13.6115 -0.6873 -4.9066 23 1 13.3692 1.3123 -6.2571 24 6 7.6858 0.4687 -2.1850 25 6 6.9960 1.0850 -1.1578 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6054 1.9815 -0.8417 32 1 2.0267 3.1437 1.3216 33 1 0.5482 2.1546 1.3814 34 1 1.7986 0.3328 2.4892 35 1 3.2926 1.2969 2.4054 36 1 1.9369 1.8428 3.4215 37 1 3.8565 0.8898 -1.0176 38 1 4.0026 0.9731 0.7543 39 1 3.4217 3.5407 -0.4303 40 1 6.4069 4.0687 -2.6168 41 1 7.6444 2.9744 -4.4428 42 1 8.3360 0.8713 -5.4394 43 1 8.5058 -0.5954 -4.4453 44 1 11.2510 -0.8436 -6.8910 45 1 8.0423 -0.5437 -2.0649 46 1 6.8135 0.5541 -0.2351 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885001053.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:24 Heat of formation + Delta-G solvation = -84.067830 kcal Electronic energy + Delta-G solvation = -25443.040121 eV Core-core repulsion = 21844.315714 eV Total energy + Delta-G solvation = -3598.724407 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -38.81255 -38.51911 -37.09430 -35.74894 -34.21175 -33.67997 -31.56734 -31.38030 -30.58063 -28.19523 -27.43579 -24.62876 -23.72883 -23.32016 -22.33855 -20.90490 -19.70644 -19.19694 -17.82440 -17.26829 -16.46345 -16.22235 -16.10206 -15.49251 -15.10679 -15.02298 -14.37479 -14.31433 -14.02993 -13.80931 -13.29042 -13.11794 -12.98420 -12.95359 -12.80398 -12.40981 -12.23491 -12.21721 -12.00940 -11.91600 -11.71091 -11.65693 -11.49659 -11.39300 -10.97117 -10.93448 -10.81643 -10.73297 -10.59734 -10.50366 -10.49617 -9.78519 -9.67725 -9.52069 -8.59613 -8.54986 -8.38843 -6.18077 -4.23008 0.52381 1.32777 1.79038 3.09422 3.22646 3.30733 3.36114 3.77127 4.11509 4.32637 4.36952 4.49498 4.51176 4.58681 4.95077 5.02823 5.12029 5.14157 5.15597 5.21544 5.23846 5.26597 5.35666 5.43832 5.56377 5.56791 5.66056 5.71746 5.77551 5.82633 5.88301 5.90551 5.90990 6.00332 6.01478 6.22550 6.24612 6.32682 6.50353 6.82692 6.84197 6.90494 7.28590 7.42534 7.58180 7.77273 8.12416 8.82107 9.42127 10.92018 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.019166 B = 0.002780 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.573800 B =10069.718203 C =10853.256530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.093 4.093 4 C -0.121 4.121 5 C -0.163 4.163 6 C 0.116 3.884 7 N -1.118 6.118 8 S 2.698 3.302 9 O -0.964 6.964 10 O -0.968 6.968 11 C -0.704 4.704 12 C -0.022 4.022 13 C -0.146 4.146 14 C 0.027 3.973 15 C 0.039 3.961 16 C -0.517 4.517 17 H 0.059 0.941 18 C 0.061 3.939 19 N -0.892 5.892 20 Si 0.898 3.102 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.146 4.146 25 C -0.025 4.025 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.052 0.948 37 H 0.067 0.933 38 H 0.083 0.917 39 H 0.415 0.585 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.035 0.965 43 H 0.035 0.965 44 H 0.264 0.736 45 H 0.129 0.871 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.385 2.687 12.403 24.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.113 4.113 4 C -0.159 4.159 5 C -0.220 4.220 6 C -0.010 4.010 7 N -0.877 5.877 8 S 2.791 3.209 9 O -0.954 6.954 10 O -0.958 6.958 11 C -0.793 4.793 12 C -0.041 4.041 13 C -0.165 4.165 14 C 0.026 3.974 15 C 0.002 3.998 16 C -0.555 4.555 17 H 0.078 0.922 18 C -0.142 4.142 19 N -0.530 5.530 20 Si 0.725 3.275 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.165 4.165 25 C -0.044 4.044 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.101 0.899 39 H 0.249 0.751 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.073 0.927 45 H 0.146 0.854 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -19.846 2.938 12.986 23.898 hybrid contribution 0.950 0.016 -0.857 1.280 sum -18.896 2.954 12.128 22.647 Atomic orbital electron populations 1.21791 0.95641 1.01627 1.01878 1.21603 0.96163 0.95664 1.02783 1.21394 0.93968 0.97215 0.98757 1.21567 1.00645 0.99479 0.94176 1.21949 1.02036 1.00329 0.97680 1.21462 0.95529 0.81664 1.02326 1.55543 1.27068 1.15358 1.89771 1.01542 0.72173 0.73142 0.74093 1.93553 1.81714 1.76658 1.43511 1.93565 1.85307 1.30061 1.86863 1.30324 1.23432 1.08076 1.17491 1.20768 0.94179 0.98097 0.91104 1.21249 1.00036 0.95667 0.99537 1.21114 0.87460 0.93004 0.95801 1.18546 0.94327 0.96080 0.90830 1.21012 0.90057 1.33144 1.11258 0.92234 1.25003 0.99341 0.94832 0.94983 1.69948 1.34895 1.34230 1.13921 0.86430 0.84561 0.78215 0.78256 1.19558 1.20782 1.20797 1.21243 1.00613 1.01056 0.93543 1.20781 0.93539 0.92051 0.98056 0.92488 0.92786 0.92772 0.91533 0.91076 0.90381 0.91813 0.91717 0.92331 0.91711 0.92932 0.91432 0.89859 0.75058 0.85290 0.85365 0.94721 0.94709 0.92676 0.85352 0.85295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.67 37.16 0.36 -0.51 16 2 C -0.12 -0.79 5.15 -26.73 -0.14 -0.93 16 3 C -0.09 -0.64 2.19 -90.62 -0.20 -0.84 16 4 C -0.12 -0.83 5.32 -26.73 -0.14 -0.97 16 5 C -0.16 -1.22 9.21 37.16 0.34 -0.87 16 6 C 0.12 1.01 5.42 -4.04 -0.02 0.99 16 7 N -1.12 -10.74 5.49 -10.61 -0.06 -10.80 16 8 S 2.70 36.83 5.74 -107.50 -0.62 36.21 16 9 O -0.96 -15.27 16.76 -57.17 -0.96 -16.23 16 10 O -0.97 -15.56 17.28 -57.17 -0.99 -16.54 16 11 C -0.70 -11.00 5.95 -39.59 -0.24 -11.23 16 12 C -0.02 -0.36 9.52 -39.59 -0.38 -0.74 16 13 C -0.15 -2.71 9.70 -39.58 -0.38 -3.10 16 14 C 0.03 0.55 5.07 -104.62 -0.53 0.02 16 15 C 0.04 0.95 5.11 -29.03 -0.15 0.80 16 16 C -0.52 -14.01 9.09 -34.44 -0.31 -14.32 16 17 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -25.50 13.29 55.43 0.74 -24.77 16 20 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 C -0.15 -2.68 9.70 -39.59 -0.38 -3.06 16 25 C -0.02 -0.40 9.52 -39.58 -0.38 -0.78 16 26 H 0.06 0.31 6.61 -51.93 -0.34 -0.03 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.45 6.15 -51.93 -0.32 0.13 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.45 7.44 -51.93 -0.39 0.07 16 33 H 0.06 0.39 6.65 -51.93 -0.35 0.04 16 34 H 0.06 0.38 6.35 -51.93 -0.33 0.05 16 35 H 0.06 0.57 6.32 -51.93 -0.33 0.24 16 36 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.75 5.85 -51.93 -0.30 0.45 16 39 H 0.42 3.12 8.33 -34.47 -0.29 2.83 16 40 H 0.13 1.82 7.62 -52.49 -0.40 1.42 16 41 H 0.13 2.26 8.06 -52.48 -0.42 1.84 16 42 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 43 H 0.03 0.88 8.08 -51.93 -0.42 0.46 16 44 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 45 H 0.13 2.23 8.06 -52.49 -0.42 1.81 16 46 H 0.13 1.76 7.62 -52.48 -0.40 1.36 16 LS Contribution 381.61 15.07 5.75 5.75 Total: -1.00 -32.43 381.61 -11.01 -43.43 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -7.21 Total: 0.83 kcal Atomic # 6 Polarization: -31.34 SS G_CDS: -2.65 Total: -33.99 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.68 Total: -35.57 kcal Atomic # 8 Polarization: -30.83 SS G_CDS: -1.95 Total: -32.78 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 36.83 SS G_CDS: -0.62 Total: 36.21 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.43 -11.01 -43.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885001053.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.635 kcal (2) G-P(sol) polarization free energy of solvation -32.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds