Wall clock time and date at job start Tue Mar 31 2020 14:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47096 * 2 1 4 4 C 1.53005 * 109.47122 * 65.00168 * 3 2 1 5 5 C 1.52995 * 109.47308 * 58.14744 * 4 3 2 6 6 C 1.53004 * 109.47044 * 185.00010 * 3 2 1 7 7 N 1.46498 * 109.46848 * 175.65490 * 6 3 2 8 8 S 1.65604 * 119.99924 * 165.04511 * 7 6 3 9 9 O 1.42102 * 106.40058 * 311.45406 * 8 7 6 10 10 O 1.42104 * 106.40276 * 178.53745 * 8 7 6 11 11 C 1.76199 * 107.21844 * 64.99474 * 8 7 6 12 12 C 1.38233 * 119.99851 * 90.00345 * 11 8 7 13 13 C 1.38232 * 119.99879 * 179.97438 * 12 11 8 14 14 C 1.38238 * 120.00005 * 0.02562 * 13 12 11 15 15 C 1.50702 * 120.00033 * 179.97438 * 14 13 12 16 16 C 1.50710 * 109.46940 * 90.00299 * 15 14 13 17 17 H 1.08000 * 119.99916 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99712 * 180.27802 * 16 15 14 19 19 N 1.31507 * 120.00556 * 359.72294 * 18 16 15 20 20 Si 1.86804 * 119.99744 * 179.72338 * 18 16 15 21 21 H 1.48505 * 109.47055 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47162 * 119.99526 * 20 18 16 23 23 H 1.48497 * 109.47208 * 240.00009 * 20 18 16 24 24 C 1.38230 * 120.00123 * 0.25343 * 14 13 12 25 25 C 1.38233 * 120.00216 * 270.02062 * 11 8 7 26 26 H 1.09000 * 109.46924 * 300.00154 * 1 2 3 27 27 H 1.08993 * 109.46926 * 59.99670 * 1 2 3 28 28 H 1.08996 * 109.47130 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46924 * 239.99846 * 2 1 3 30 30 H 1.08998 * 109.46949 * 119.99872 * 2 1 3 31 31 H 1.08996 * 109.47327 * 305.00280 * 3 2 1 32 32 H 1.08998 * 109.46899 * 178.14908 * 4 3 2 33 33 H 1.08997 * 109.47204 * 298.14481 * 4 3 2 34 34 H 1.09006 * 109.46873 * 298.77964 * 5 4 3 35 35 H 1.09004 * 109.47243 * 58.77858 * 5 4 3 36 36 H 1.09001 * 109.47281 * 178.77830 * 5 4 3 37 37 H 1.08995 * 109.46833 * 55.65184 * 6 3 2 38 38 H 1.09000 * 109.47062 * 295.65221 * 6 3 2 39 39 H 0.97000 * 120.00263 * 345.03570 * 7 6 3 40 40 H 1.08002 * 120.00483 * 359.97438 * 12 11 8 41 41 H 1.08005 * 120.00298 * 180.02562 * 13 12 11 42 42 H 1.09003 * 109.47206 * 330.00398 * 15 14 13 43 43 H 1.08994 * 109.47398 * 210.00296 * 15 14 13 44 44 H 0.96995 * 120.00835 * 180.02562 * 19 18 16 45 45 H 1.08000 * 120.00547 * 179.72680 * 24 14 13 46 46 H 1.08004 * 119.99997 * 0.02562 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6353 2.1265 1.3074 5 6 2.2070 1.3435 2.4910 6 6 3.5649 1.4443 -0.1257 7 7 4.0445 2.8246 -0.2301 8 16 5.6503 3.1623 -0.0065 9 8 6.0361 2.5021 1.1913 10 8 5.7974 4.5617 -0.2047 11 6 6.5349 2.3789 -1.3135 12 6 6.7677 3.0581 -2.4948 13 6 7.4622 2.4437 -3.5200 14 6 7.9235 1.1499 -3.3641 15 6 8.6801 0.4799 -4.4820 16 6 10.1537 0.7555 -4.3270 17 1 10.5068 1.3562 -3.5018 18 6 11.0502 0.2461 -5.2422 19 7 10.6202 -0.4849 -6.2473 20 14 12.8759 0.5942 -5.0545 21 1 13.0983 1.4350 -3.8507 22 1 13.6115 -0.6873 -4.9066 23 1 13.3692 1.3123 -6.2571 24 6 7.6858 0.4687 -2.1850 25 6 6.9960 1.0850 -1.1578 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6054 1.9815 -0.8417 32 1 2.0267 3.1437 1.3216 33 1 0.5482 2.1546 1.3814 34 1 1.7986 0.3328 2.4892 35 1 3.2926 1.2969 2.4054 36 1 1.9369 1.8428 3.4215 37 1 3.8565 0.8898 -1.0176 38 1 4.0026 0.9731 0.7543 39 1 3.4217 3.5407 -0.4303 40 1 6.4069 4.0687 -2.6168 41 1 7.6444 2.9744 -4.4428 42 1 8.3360 0.8713 -5.4394 43 1 8.5058 -0.5954 -4.4453 44 1 11.2510 -0.8436 -6.8910 45 1 8.0423 -0.5437 -2.0649 46 1 6.8135 0.5541 -0.2351 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885001053.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:23 Heat of formation + Delta-G solvation = -103.799852 kcal Electronic energy + Delta-G solvation = -25443.895765 eV Core-core repulsion = 21844.315714 eV Total energy + Delta-G solvation = -3599.580052 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.23386 -39.14092 -38.28341 -36.95944 -35.60603 -34.94842 -33.31985 -31.96146 -31.89634 -29.24915 -28.82355 -25.60383 -25.23137 -23.89000 -23.68901 -22.47243 -20.61059 -19.98534 -18.98098 -18.59179 -18.31722 -17.23433 -16.89205 -16.65532 -16.35371 -16.01292 -15.95871 -15.46856 -15.22213 -14.68244 -14.58158 -14.45012 -13.94189 -13.82276 -13.62195 -13.52097 -13.41764 -13.35988 -13.32706 -13.19465 -13.13165 -12.71346 -12.69287 -12.65602 -12.22398 -12.13717 -12.04133 -11.98353 -11.66038 -11.47436 -11.33005 -11.25934 -11.12832 -10.66598 -10.40917 -9.96254 -9.94907 -8.27964 -6.40610 -0.60655 -0.06150 0.39754 1.36625 1.38192 1.50825 2.04413 2.34333 2.56952 2.83459 3.04734 3.32687 3.80134 3.87811 3.96981 3.97536 3.99431 4.15907 4.43154 4.43901 4.47729 4.50049 4.50849 4.63373 4.65929 4.76804 4.81655 4.91153 4.91939 4.98884 5.03891 5.10898 5.16219 5.22925 5.24708 5.25708 5.33404 5.36530 5.40766 5.45295 5.51013 5.66584 5.69772 5.86118 5.92342 6.09409 6.13021 6.71427 7.28608 8.82336 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.019166 B = 0.002780 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.573800 B =10069.718203 C =10853.256530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.088 4.088 4 C -0.122 4.122 5 C -0.165 4.165 6 C 0.107 3.893 7 N -1.100 6.100 8 S 2.725 3.275 9 O -0.982 6.982 10 O -0.988 6.988 11 C -0.701 4.701 12 C -0.019 4.019 13 C -0.156 4.156 14 C -0.003 4.003 15 C 0.048 3.952 16 C -0.533 4.533 17 H 0.053 0.947 18 C 0.010 3.990 19 N -0.925 5.925 20 Si 0.964 3.036 21 H -0.268 1.268 22 H -0.274 1.274 23 H -0.275 1.275 24 C -0.154 4.154 25 C -0.019 4.019 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.049 0.951 36 H 0.053 0.947 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.428 0.572 40 H 0.155 0.845 41 H 0.129 0.871 42 H 0.013 0.987 43 H 0.014 0.986 44 H 0.267 0.733 45 H 0.131 0.869 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.516 3.490 13.896 25.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.108 4.108 4 C -0.159 4.159 5 C -0.222 4.222 6 C -0.019 4.019 7 N -0.864 5.864 8 S 2.815 3.185 9 O -0.972 6.972 10 O -0.978 6.978 11 C -0.787 4.787 12 C -0.039 4.039 13 C -0.175 4.175 14 C -0.004 4.004 15 C 0.011 3.989 16 C -0.571 4.571 17 H 0.071 0.929 18 C -0.189 4.189 19 N -0.565 5.565 20 Si 0.788 3.212 21 H -0.192 1.192 22 H -0.200 1.200 23 H -0.201 1.201 24 C -0.173 4.173 25 C -0.038 4.038 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.266 0.734 40 H 0.172 0.828 41 H 0.147 0.853 42 H 0.031 0.969 43 H 0.032 0.968 44 H 0.076 0.924 45 H 0.148 0.852 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -20.972 3.743 14.461 25.748 hybrid contribution 1.161 -0.227 -1.243 1.716 sum -19.810 3.516 13.218 24.074 Atomic orbital electron populations 1.21778 0.95011 1.01865 1.02139 1.21609 0.96679 0.95244 1.02737 1.21372 0.92474 0.97734 0.99194 1.21592 1.01388 0.99196 0.93754 1.21967 1.01091 1.01033 0.98122 1.21682 0.96932 0.80748 1.02510 1.55177 1.25444 1.16469 1.89293 1.00757 0.72647 0.72056 0.73035 1.93534 1.82659 1.76932 1.44038 1.93537 1.86075 1.31270 1.86903 1.30808 1.22513 1.07744 1.17679 1.21019 0.93199 0.99093 0.90548 1.21306 1.00589 0.95088 1.00511 1.20818 0.89594 0.94250 0.95708 1.18269 0.93947 0.95063 0.91611 1.21317 0.91790 1.32919 1.11035 0.92880 1.25855 1.03887 0.94564 0.94620 1.70051 1.36512 1.35175 1.14727 0.85415 0.79136 0.78286 0.78346 1.19246 1.19986 1.20051 1.21308 1.01165 1.01337 0.93497 1.21040 0.92267 0.92322 0.98218 0.92072 0.92660 0.92611 0.91749 0.91043 0.89453 0.91955 0.90530 0.91565 0.93191 0.92791 0.91072 0.90023 0.73449 0.82772 0.85326 0.96875 0.96751 0.92358 0.85155 0.82613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.67 71.98 0.70 -0.71 16 2 C -0.12 -1.34 5.15 30.59 0.16 -1.18 16 3 C -0.09 -0.99 2.19 -10.79 -0.02 -1.02 16 4 C -0.12 -1.37 5.32 30.59 0.16 -1.21 16 5 C -0.17 -2.15 9.21 71.98 0.66 -1.49 16 6 C 0.11 1.61 5.42 86.38 0.47 2.08 16 7 N -1.10 -18.33 5.49 -187.49 -1.03 -19.36 16 8 S 2.73 68.14 5.74 -56.49 -0.32 67.82 16 9 O -0.98 -28.93 16.76 -128.00 -2.14 -31.07 16 10 O -0.99 -29.42 17.28 -128.00 -2.21 -31.63 16 11 C -0.70 -20.60 5.95 22.27 0.13 -20.47 16 12 C -0.02 -0.61 9.52 22.27 0.21 -0.40 16 13 C -0.16 -5.83 9.70 22.27 0.22 -5.62 16 14 C 0.00 -0.14 5.07 -19.87 -0.10 -0.24 16 15 C 0.05 2.46 5.11 29.11 0.15 2.61 16 16 C -0.53 -29.72 9.09 25.60 0.23 -29.48 16 17 H 0.05 2.96 7.74 -2.91 -0.02 2.93 16 18 C 0.01 0.54 5.46 84.66 0.46 1.00 16 19 N -0.93 -54.16 13.29 21.45 0.28 -53.88 16 20 Si 0.96 43.68 29.54 68.60 2.03 45.70 16 21 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 22 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 23 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 24 C -0.15 -5.68 9.70 22.27 0.22 -5.47 16 25 C -0.02 -0.60 9.52 22.27 0.21 -0.38 16 26 H 0.06 0.52 6.61 -2.39 -0.02 0.50 16 27 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.71 16 30 H 0.07 0.76 6.15 -2.39 -0.01 0.75 16 31 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 0.72 7.44 -2.39 -0.02 0.71 16 33 H 0.08 0.70 6.65 -2.39 -0.02 0.69 16 34 H 0.07 0.74 6.35 -2.38 -0.02 0.73 16 35 H 0.05 0.80 6.32 -2.38 -0.02 0.79 16 36 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.08 1.30 5.85 -2.39 -0.01 1.29 16 39 H 0.43 5.18 8.33 -96.74 -0.81 4.38 16 40 H 0.15 4.00 7.62 -2.91 -0.02 3.98 16 41 H 0.13 4.65 8.06 -2.91 -0.02 4.63 16 42 H 0.01 0.70 8.09 -2.39 -0.02 0.68 16 43 H 0.01 0.77 8.08 -2.39 -0.02 0.75 16 44 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 45 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 46 H 0.16 3.90 7.62 -2.91 -0.02 3.87 16 Total: -1.00 -69.60 381.61 0.62 -68.98 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 0.17 Total: 15.42 kcal Atomic # 6 Polarization: -65.83 SS G_CDS: 3.86 Total: -61.97 kcal Atomic # 7 Polarization: -72.49 SS G_CDS: -0.74 Total: -73.24 kcal Atomic # 8 Polarization: -58.35 SS G_CDS: -4.36 Total: -62.71 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: 68.14 SS G_CDS: -0.32 Total: 67.82 kcal Total: -69.60 0.62 -68.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885001053.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.821 kcal (2) G-P(sol) polarization free energy of solvation -69.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds