Wall clock time and date at job start Tue Mar 31 2020 14:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47239 * 2 1 4 4 C 1.53002 * 109.47276 * 175.32743 * 3 2 1 5 5 C 1.53000 * 109.47045 * 295.32972 * 3 2 1 6 6 C 1.53003 * 109.46906 * 299.99749 * 5 3 2 7 7 N 1.46495 * 109.47367 * 55.32966 * 3 2 1 8 8 S 1.65602 * 120.00205 * 67.08113 * 7 3 2 9 9 O 1.42100 * 106.40031 * 313.72615 * 8 7 3 10 10 O 1.42096 * 106.40687 * 180.80985 * 8 7 3 11 11 C 1.76198 * 107.21933 * 67.26459 * 8 7 3 12 12 C 1.38238 * 119.99749 * 78.93034 * 11 8 7 13 13 C 1.38240 * 119.99872 * 179.97438 * 12 11 8 14 14 C 1.38232 * 119.99974 * 0.02562 * 13 12 11 15 15 C 1.50701 * 120.00164 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.46941 * 90.00015 * 15 14 13 17 17 H 1.08001 * 120.00108 * 0.02562 * 16 15 14 18 18 C 1.37873 * 120.00034 * 180.27683 * 16 15 14 19 19 N 1.31515 * 119.99773 * 359.72830 * 18 16 15 20 20 Si 1.86803 * 120.00222 * 179.72768 * 18 16 15 21 21 H 1.48502 * 109.46768 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47283 * 120.00136 * 20 18 16 23 23 H 1.48504 * 109.46860 * 239.99988 * 20 18 16 24 24 C 1.38242 * 120.00100 * 0.25678 * 14 13 12 25 25 C 1.38237 * 119.99882 * 359.49556 * 24 14 13 26 26 H 1.08999 * 109.47408 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47433 * 300.00227 * 1 2 3 28 28 H 1.09008 * 109.46771 * 60.00350 * 1 2 3 29 29 H 1.09001 * 109.47433 * 239.99773 * 2 1 3 30 30 H 1.09003 * 109.47127 * 119.99401 * 2 1 3 31 31 H 1.08997 * 109.47174 * 309.76563 * 4 3 2 32 32 H 1.09002 * 109.46712 * 69.76887 * 4 3 2 33 33 H 1.09000 * 109.47488 * 189.76265 * 4 3 2 34 34 H 1.08996 * 109.46921 * 60.00173 * 5 3 2 35 35 H 1.09005 * 109.47232 * 180.02562 * 5 3 2 36 36 H 1.08996 * 109.47108 * 60.00224 * 6 5 3 37 37 H 1.09005 * 109.46658 * 179.97438 * 6 5 3 38 38 H 1.08995 * 109.46937 * 299.99925 * 6 5 3 39 39 H 0.97005 * 120.00503 * 247.08420 * 7 3 2 40 40 H 1.08000 * 120.00447 * 359.97438 * 12 11 8 41 41 H 1.07999 * 120.00044 * 180.02562 * 13 12 11 42 42 H 1.09003 * 109.46857 * 330.00227 * 15 14 13 43 43 H 1.08998 * 109.47190 * 210.00065 * 15 14 13 44 44 H 0.97010 * 119.99838 * 179.97438 * 19 18 16 45 45 H 1.07994 * 119.99819 * 179.72565 * 24 14 13 46 46 H 1.07997 * 119.99987 * 180.25378 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5655 1.4441 0.1175 5 6 1.6281 2.1290 -1.3038 6 6 2.2318 1.3746 -2.4902 7 7 1.4620 2.1648 1.1359 8 16 1.8842 1.7499 2.6825 9 8 1.8096 0.3325 2.7522 10 8 1.1504 2.6099 3.5433 11 6 3.5829 2.1694 2.8899 12 6 3.9467 3.4819 3.1267 13 6 5.2794 3.8110 3.2899 14 6 6.2482 2.8278 3.2158 15 6 7.7011 3.1866 3.3932 16 6 8.0689 3.0861 4.8512 17 1 7.3252 2.7914 5.5767 18 6 9.3537 3.3753 5.2595 19 7 10.2595 3.7338 4.3760 20 14 9.8077 3.2581 7.0677 21 1 8.6178 2.8377 7.8506 22 1 10.8933 2.2600 7.2418 23 1 10.2727 4.5841 7.5483 24 6 5.8849 1.5162 2.9732 25 6 4.5518 1.1863 2.8151 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5137 0.8901 31 1 3.8664 0.8088 0.9505 32 1 4.0013 1.0630 -0.8060 33 1 3.9155 2.4616 0.2916 34 1 0.5414 2.1279 -1.3874 35 1 1.9919 3.1566 -1.3040 36 1 1.8685 0.3470 -2.4902 37 1 1.9380 1.8635 -3.4191 38 1 3.3186 1.3758 -2.4064 39 1 0.8320 2.8862 0.9822 40 1 3.1899 4.2502 3.1842 41 1 5.5636 4.8363 3.4753 42 1 7.8686 4.2061 3.0456 43 1 8.3183 2.4994 2.8145 44 1 11.1633 3.9377 4.6634 45 1 6.6422 0.7488 2.9109 46 1 4.2676 0.1610 2.6296 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885010717.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:28 Heat of formation + Delta-G solvation = -65.965918 kcal Electronic energy + Delta-G solvation = -26561.505416 eV Core-core repulsion = 22963.565967 eV Total energy + Delta-G solvation = -3597.939449 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.25806 -38.69670 -37.00631 -35.72697 -33.72990 -32.56269 -31.69920 -31.31902 -30.69216 -28.92797 -27.38239 -24.64066 -23.71139 -23.50417 -22.36379 -20.89818 -19.76794 -19.03536 -17.74053 -17.49044 -16.45538 -16.19668 -15.58230 -15.24532 -15.07107 -14.57102 -14.43474 -14.37317 -13.80497 -13.70688 -13.26294 -13.16606 -13.05094 -12.81403 -12.60629 -12.39148 -12.13453 -11.95405 -11.92915 -11.84224 -11.65528 -11.50017 -11.46855 -11.24206 -11.17786 -10.97202 -10.92788 -10.77442 -10.49109 -10.48138 -10.30233 -9.74621 -9.66805 -9.50977 -8.56326 -8.52180 -8.33359 -6.17892 -4.22729 0.56378 1.33913 1.79271 3.08240 3.22722 3.30854 3.36214 3.78819 4.11104 4.37058 4.42628 4.53116 4.63417 4.71333 4.95774 5.06641 5.15873 5.18096 5.21895 5.23125 5.29552 5.37315 5.51924 5.64023 5.66926 5.69690 5.72513 5.79510 5.86128 5.88817 5.91817 5.97744 6.04006 6.15857 6.24570 6.25193 6.32596 6.42637 6.52256 6.83837 6.89625 6.92870 7.29020 7.43087 7.58941 7.77535 8.12837 8.82426 9.42403 10.92135 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.021406 B = 0.003235 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.701676 B = 8652.217222 C = 9260.097240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.156 4.156 3 C 0.185 3.815 4 C -0.197 4.197 5 C -0.121 4.121 6 C -0.156 4.156 7 N -1.110 6.110 8 S 2.697 3.303 9 O -0.961 6.961 10 O -0.971 6.971 11 C -0.702 4.702 12 C -0.021 4.021 13 C -0.147 4.147 14 C 0.027 3.973 15 C 0.039 3.961 16 C -0.517 4.517 17 H 0.059 0.941 18 C 0.060 3.940 19 N -0.891 5.891 20 Si 0.898 3.102 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.146 4.146 25 C -0.021 4.021 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.074 0.926 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.414 0.586 40 H 0.124 0.876 41 H 0.127 0.873 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.263 0.737 45 H 0.128 0.872 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.362 -4.202 -13.440 22.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.194 4.194 3 C 0.097 3.903 4 C -0.254 4.254 5 C -0.160 4.160 6 C -0.214 4.214 7 N -0.868 5.868 8 S 2.790 3.210 9 O -0.951 6.951 10 O -0.961 6.961 11 C -0.791 4.791 12 C -0.040 4.040 13 C -0.166 4.166 14 C 0.027 3.973 15 C 0.002 3.998 16 C -0.555 4.555 17 H 0.078 0.922 18 C -0.142 4.142 19 N -0.530 5.530 20 Si 0.725 3.275 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.165 4.165 25 C -0.041 4.041 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.117 0.883 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.248 0.752 40 H 0.142 0.858 41 H 0.145 0.855 42 H 0.052 0.948 43 H 0.053 0.947 44 H 0.073 0.927 45 H 0.146 0.854 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -17.617 -4.673 -12.794 22.268 hybrid contribution 0.873 0.705 0.760 1.355 sum -16.744 -3.968 -12.034 20.998 Atomic orbital electron populations 1.21687 0.95719 1.01416 1.01355 1.22399 0.96897 0.95511 1.04621 1.20165 0.92717 0.91614 0.85833 1.22972 0.94052 1.04071 1.04338 1.21750 1.01319 0.99735 0.93150 1.21926 1.01558 1.00688 0.97205 1.55684 1.58645 1.49325 1.23162 1.01567 0.73929 0.73692 0.71831 1.93514 1.86659 1.29355 1.85616 1.93567 1.70978 1.68138 1.63418 1.30339 1.23569 1.01922 1.23271 1.20681 0.96889 0.93552 0.92899 1.21211 0.92126 1.00313 1.02912 1.21082 0.98963 0.92372 0.84880 1.18537 0.85067 0.98140 0.98015 1.21014 0.95846 1.47018 0.91582 0.92234 1.25004 0.96306 0.94835 0.98019 1.69960 1.03561 1.45800 1.33669 0.86432 0.78591 0.77827 0.84626 1.19560 1.20793 1.20812 1.21222 0.95444 0.96992 1.02876 1.20719 0.92786 0.97607 0.92951 0.92839 0.92996 0.92967 0.90719 0.88345 0.90632 0.90268 0.90904 0.91082 0.91224 0.92008 0.92573 0.91866 0.75174 0.85765 0.85496 0.94775 0.94742 0.92698 0.85421 0.84905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.45 37.15 0.35 -0.94 16 2 C -0.16 -1.48 4.35 -26.74 -0.12 -1.60 16 3 C 0.18 1.69 0.60 -131.82 -0.08 1.61 16 4 C -0.20 -2.01 6.80 37.16 0.25 -1.75 16 5 C -0.12 -0.87 4.86 -26.73 -0.13 -1.00 16 6 C -0.16 -1.01 9.24 37.16 0.34 -0.67 16 7 N -1.11 -11.04 4.57 0.54 0.00 -11.04 16 8 S 2.70 37.17 5.41 -107.50 -0.58 36.59 16 9 O -0.96 -14.64 14.06 -57.18 -0.80 -15.44 16 10 O -0.97 -16.09 17.61 -57.18 -1.01 -17.10 16 11 C -0.70 -10.76 4.11 -39.58 -0.16 -10.92 16 12 C -0.02 -0.33 9.53 -39.58 -0.38 -0.71 16 13 C -0.15 -2.68 9.70 -39.58 -0.38 -3.06 16 14 C 0.03 0.56 5.07 -104.62 -0.53 0.02 16 15 C 0.04 0.95 5.11 -29.03 -0.15 0.80 16 16 C -0.52 -13.96 9.09 -34.44 -0.31 -14.27 16 17 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -25.44 13.29 55.43 0.74 -24.71 16 20 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 21 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 24 C -0.15 -2.64 9.70 -39.58 -0.38 -3.02 16 25 C -0.02 -0.34 6.84 -39.58 -0.27 -0.61 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.51 7.48 -51.93 -0.39 0.12 16 28 H 0.05 0.38 6.55 -51.92 -0.34 0.04 16 29 H 0.07 0.59 6.19 -51.93 -0.32 0.27 16 30 H 0.10 1.14 5.72 -51.93 -0.30 0.84 16 31 H 0.08 0.85 3.94 -51.93 -0.20 0.65 16 32 H 0.08 0.68 5.96 -51.93 -0.31 0.37 16 33 H 0.07 0.80 7.68 -51.93 -0.40 0.40 16 34 H 0.07 0.46 6.55 -51.93 -0.34 0.12 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.38 6.33 -51.93 -0.33 0.05 16 37 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.06 0.42 6.23 -51.93 -0.32 0.10 16 39 H 0.41 3.21 8.62 -34.47 -0.30 2.92 16 40 H 0.12 1.70 7.90 -52.49 -0.41 1.28 16 41 H 0.13 2.22 8.06 -52.49 -0.42 1.80 16 42 H 0.03 0.86 8.09 -51.93 -0.42 0.44 16 43 H 0.03 0.87 8.08 -51.93 -0.42 0.45 16 44 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 45 H 0.13 2.20 8.06 -52.49 -0.42 1.77 16 46 H 0.13 1.82 6.80 -52.49 -0.36 1.47 16 LS Contribution 364.41 15.07 5.49 5.49 Total: -1.00 -31.81 364.41 -10.05 -41.85 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -6.82 Total: 2.82 kcal Atomic # 6 Polarization: -32.50 SS G_CDS: -2.05 Total: -34.54 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: 0.74 Total: -35.75 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: -1.81 Total: -32.54 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 37.17 SS G_CDS: -0.58 Total: 36.59 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.81 -10.05 -41.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885010717.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.114 kcal (2) G-P(sol) polarization free energy of solvation -31.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds