Wall clock time and date at job start Tue Mar 31 2020 14:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47239 * 2 1 4 4 C 1.53002 * 109.47276 * 175.32743 * 3 2 1 5 5 C 1.53000 * 109.47045 * 295.32972 * 3 2 1 6 6 C 1.53003 * 109.46906 * 299.99749 * 5 3 2 7 7 N 1.46495 * 109.47367 * 55.32966 * 3 2 1 8 8 S 1.65602 * 120.00205 * 67.08113 * 7 3 2 9 9 O 1.42100 * 106.40031 * 313.72615 * 8 7 3 10 10 O 1.42096 * 106.40687 * 180.80985 * 8 7 3 11 11 C 1.76198 * 107.21933 * 67.26459 * 8 7 3 12 12 C 1.38238 * 119.99749 * 78.93034 * 11 8 7 13 13 C 1.38240 * 119.99872 * 179.97438 * 12 11 8 14 14 C 1.38232 * 119.99974 * 0.02562 * 13 12 11 15 15 C 1.50701 * 120.00164 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.46941 * 90.00015 * 15 14 13 17 17 H 1.08001 * 120.00108 * 0.02562 * 16 15 14 18 18 C 1.37873 * 120.00034 * 180.27683 * 16 15 14 19 19 N 1.31515 * 119.99773 * 359.72830 * 18 16 15 20 20 Si 1.86803 * 120.00222 * 179.72768 * 18 16 15 21 21 H 1.48502 * 109.46768 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47283 * 120.00136 * 20 18 16 23 23 H 1.48504 * 109.46860 * 239.99988 * 20 18 16 24 24 C 1.38242 * 120.00100 * 0.25678 * 14 13 12 25 25 C 1.38237 * 119.99882 * 359.49556 * 24 14 13 26 26 H 1.08999 * 109.47408 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47433 * 300.00227 * 1 2 3 28 28 H 1.09008 * 109.46771 * 60.00350 * 1 2 3 29 29 H 1.09001 * 109.47433 * 239.99773 * 2 1 3 30 30 H 1.09003 * 109.47127 * 119.99401 * 2 1 3 31 31 H 1.08997 * 109.47174 * 309.76563 * 4 3 2 32 32 H 1.09002 * 109.46712 * 69.76887 * 4 3 2 33 33 H 1.09000 * 109.47488 * 189.76265 * 4 3 2 34 34 H 1.08996 * 109.46921 * 60.00173 * 5 3 2 35 35 H 1.09005 * 109.47232 * 180.02562 * 5 3 2 36 36 H 1.08996 * 109.47108 * 60.00224 * 6 5 3 37 37 H 1.09005 * 109.46658 * 179.97438 * 6 5 3 38 38 H 1.08995 * 109.46937 * 299.99925 * 6 5 3 39 39 H 0.97005 * 120.00503 * 247.08420 * 7 3 2 40 40 H 1.08000 * 120.00447 * 359.97438 * 12 11 8 41 41 H 1.07999 * 120.00044 * 180.02562 * 13 12 11 42 42 H 1.09003 * 109.46857 * 330.00227 * 15 14 13 43 43 H 1.08998 * 109.47190 * 210.00065 * 15 14 13 44 44 H 0.97010 * 119.99838 * 179.97438 * 19 18 16 45 45 H 1.07994 * 119.99819 * 179.72565 * 24 14 13 46 46 H 1.07997 * 119.99987 * 180.25378 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5655 1.4441 0.1175 5 6 1.6281 2.1290 -1.3038 6 6 2.2318 1.3746 -2.4902 7 7 1.4620 2.1648 1.1359 8 16 1.8842 1.7499 2.6825 9 8 1.8096 0.3325 2.7522 10 8 1.1504 2.6099 3.5433 11 6 3.5829 2.1694 2.8899 12 6 3.9467 3.4819 3.1267 13 6 5.2794 3.8110 3.2899 14 6 6.2482 2.8278 3.2158 15 6 7.7011 3.1866 3.3932 16 6 8.0689 3.0861 4.8512 17 1 7.3252 2.7914 5.5767 18 6 9.3537 3.3753 5.2595 19 7 10.2595 3.7338 4.3760 20 14 9.8077 3.2581 7.0677 21 1 8.6178 2.8377 7.8506 22 1 10.8933 2.2600 7.2418 23 1 10.2727 4.5841 7.5483 24 6 5.8849 1.5162 2.9732 25 6 4.5518 1.1863 2.8151 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5137 0.8901 31 1 3.8664 0.8088 0.9505 32 1 4.0013 1.0630 -0.8060 33 1 3.9155 2.4616 0.2916 34 1 0.5414 2.1279 -1.3874 35 1 1.9919 3.1566 -1.3040 36 1 1.8685 0.3470 -2.4902 37 1 1.9380 1.8635 -3.4191 38 1 3.3186 1.3758 -2.4064 39 1 0.8320 2.8862 0.9822 40 1 3.1899 4.2502 3.1842 41 1 5.5636 4.8363 3.4753 42 1 7.8686 4.2061 3.0456 43 1 8.3183 2.4994 2.8145 44 1 11.1633 3.9377 4.6634 45 1 6.6422 0.7488 2.9109 46 1 4.2676 0.1610 2.6296 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885010717.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:27 Heat of formation + Delta-G solvation = -85.661053 kcal Electronic energy + Delta-G solvation = -26562.359461 eV Core-core repulsion = 22963.565967 eV Total energy + Delta-G solvation = -3598.793494 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.40722 -39.72321 -38.18273 -36.93295 -35.62380 -33.42783 -33.28555 -32.07690 -31.99372 -29.83715 -29.07993 -25.60877 -25.25480 -24.19159 -23.71949 -22.46145 -20.63981 -20.04333 -18.87679 -18.62066 -18.49633 -17.17195 -16.88512 -16.46336 -16.17973 -15.88687 -15.70668 -15.42257 -15.07296 -14.65150 -14.55463 -14.38889 -14.17129 -13.85686 -13.65482 -13.44751 -13.39959 -13.34251 -13.15015 -13.13798 -12.73697 -12.69010 -12.67258 -12.54669 -12.27632 -12.14349 -12.03281 -11.99783 -11.79726 -11.64220 -11.46339 -11.35001 -11.03681 -10.66077 -10.41783 -9.92008 -9.81263 -8.27492 -6.40010 -0.57124 -0.03634 0.41841 1.36674 1.38303 1.50915 2.03635 2.34564 2.58207 2.84295 3.05190 3.37878 3.73396 3.87008 3.95175 3.97166 4.01346 4.17434 4.24096 4.43592 4.49367 4.50688 4.58158 4.64448 4.73639 4.82781 4.83676 4.91447 4.93654 5.01444 5.11773 5.15580 5.20232 5.23831 5.26668 5.26786 5.34999 5.35837 5.40873 5.44385 5.53478 5.67250 5.75680 5.88340 5.93775 6.10480 6.18834 6.72130 7.29165 8.82667 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.021406 B = 0.003235 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.701676 B = 8652.217222 C = 9260.097240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.159 4.159 3 C 0.184 3.816 4 C -0.202 4.202 5 C -0.117 4.117 6 C -0.157 4.157 7 N -1.094 6.094 8 S 2.718 3.282 9 O -0.973 6.973 10 O -0.995 6.995 11 C -0.697 4.697 12 C -0.017 4.017 13 C -0.156 4.156 14 C -0.001 4.001 15 C 0.049 3.951 16 C -0.533 4.533 17 H 0.053 0.947 18 C 0.010 3.990 19 N -0.925 5.925 20 Si 0.963 3.037 21 H -0.268 1.268 22 H -0.275 1.275 23 H -0.275 1.275 24 C -0.154 4.154 25 C -0.012 4.012 26 H 0.054 0.946 27 H 0.040 0.960 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.063 0.937 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.428 0.572 40 H 0.151 0.849 41 H 0.127 0.873 42 H 0.012 0.988 43 H 0.013 0.987 44 H 0.267 0.733 45 H 0.128 0.872 46 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.442 -4.631 -14.133 24.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.197 4.197 3 C 0.097 3.903 4 C -0.260 4.260 5 C -0.156 4.156 6 C -0.215 4.215 7 N -0.856 5.856 8 S 2.809 3.191 9 O -0.963 6.963 10 O -0.985 6.985 11 C -0.784 4.784 12 C -0.036 4.036 13 C -0.175 4.175 14 C -0.001 4.001 15 C 0.012 3.988 16 C -0.571 4.571 17 H 0.071 0.929 18 C -0.189 4.189 19 N -0.564 5.564 20 Si 0.788 3.212 21 H -0.193 1.193 22 H -0.200 1.200 23 H -0.201 1.201 24 C -0.173 4.173 25 C -0.031 4.031 26 H 0.073 0.927 27 H 0.059 0.941 28 H 0.090 0.910 29 H 0.110 0.890 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.113 0.887 33 H 0.082 0.918 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.265 0.735 40 H 0.169 0.831 41 H 0.145 0.855 42 H 0.031 0.969 43 H 0.032 0.968 44 H 0.076 0.924 45 H 0.146 0.854 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -19.688 -5.091 -13.482 24.398 hybrid contribution 1.414 0.795 0.859 1.836 sum -18.273 -4.296 -12.623 22.621 Atomic orbital electron populations 1.21729 0.95178 1.01777 1.01792 1.22413 0.97423 0.95438 1.04455 1.20293 0.91943 0.91806 0.86289 1.23015 0.95028 1.03241 1.04692 1.21752 1.02203 0.99702 0.91921 1.21943 1.01277 1.01001 0.97238 1.55377 1.58478 1.49854 1.21907 1.00940 0.72755 0.73040 0.72360 1.93511 1.86408 1.30097 1.86236 1.93535 1.71096 1.68722 1.65150 1.30777 1.24785 1.01549 1.21319 1.20925 0.96318 0.94582 0.91764 1.21248 0.92903 0.99969 1.03380 1.20764 0.97025 0.94049 0.88287 1.18257 0.87866 0.96277 0.96436 1.21325 0.95997 1.46792 0.92944 0.92880 1.25852 0.96264 0.94418 1.02389 1.70063 1.04000 1.46682 1.35702 0.85419 0.78321 0.78111 0.79353 1.19259 1.20017 1.20073 1.21246 0.96714 0.96106 1.03254 1.20908 0.91722 0.98858 0.91629 0.92652 0.94054 0.91014 0.89015 0.90482 0.91916 0.88718 0.91821 0.89783 0.90914 0.91517 0.91598 0.92281 0.73530 0.83141 0.85511 0.96937 0.96831 0.92394 0.85381 0.82722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.45 71.98 0.68 -1.56 16 2 C -0.16 -2.64 4.35 30.59 0.13 -2.50 16 3 C 0.18 2.92 0.60 3.60 0.00 2.92 16 4 C -0.20 -3.77 6.80 71.98 0.49 -3.28 16 5 C -0.12 -1.31 4.86 30.60 0.15 -1.16 16 6 C -0.16 -1.56 9.24 71.98 0.66 -0.89 16 7 N -1.09 -19.14 4.57 -152.22 -0.70 -19.83 16 8 S 2.72 69.96 5.41 -56.49 -0.31 69.65 16 9 O -0.97 -28.00 14.06 -128.00 -1.80 -29.79 16 10 O -0.99 -31.07 17.61 -128.00 -2.25 -33.33 16 11 C -0.70 -20.48 4.11 22.27 0.09 -20.39 16 12 C -0.02 -0.52 9.53 22.27 0.21 -0.31 16 13 C -0.16 -5.77 9.70 22.27 0.22 -5.55 16 14 C 0.00 -0.04 5.07 -19.86 -0.10 -0.14 16 15 C 0.05 2.48 5.11 29.10 0.15 2.63 16 16 C -0.53 -29.69 9.09 25.60 0.23 -29.46 16 17 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 18 C 0.01 0.54 5.46 84.65 0.46 1.01 16 19 N -0.92 -54.13 13.29 21.45 0.28 -53.84 16 20 Si 0.96 43.71 29.54 68.60 2.03 45.73 16 21 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 22 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 23 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 24 C -0.15 -5.65 9.70 22.27 0.22 -5.43 16 25 C -0.01 -0.37 6.84 22.27 0.15 -0.22 16 26 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.04 0.71 7.48 -2.39 -0.02 0.69 16 28 H 0.07 0.80 6.55 -2.38 -0.02 0.78 16 29 H 0.09 1.20 6.19 -2.39 -0.01 1.19 16 30 H 0.08 1.65 5.72 -2.39 -0.01 1.64 16 31 H 0.06 1.33 3.94 -2.39 -0.01 1.32 16 32 H 0.09 1.46 5.96 -2.39 -0.01 1.44 16 33 H 0.06 1.31 7.68 -2.39 -0.02 1.29 16 34 H 0.08 0.75 6.55 -2.39 -0.02 0.74 16 35 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 36 H 0.07 0.60 6.33 -2.39 -0.02 0.59 16 37 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 38 H 0.06 0.64 6.23 -2.39 -0.01 0.63 16 39 H 0.43 5.40 8.62 -96.74 -0.83 4.57 16 40 H 0.15 3.81 7.90 -2.91 -0.02 3.78 16 41 H 0.13 4.56 8.06 -2.91 -0.02 4.54 16 42 H 0.01 0.67 8.09 -2.39 -0.02 0.65 16 43 H 0.01 0.72 8.08 -2.39 -0.02 0.70 16 44 H 0.27 14.62 8.31 -92.70 -0.77 13.85 16 45 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 46 H 0.16 4.04 6.80 -2.91 -0.02 4.02 16 Total: -1.00 -68.96 364.41 1.16 -67.79 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: 0.16 Total: 17.98 kcal Atomic # 6 Polarization: -68.10 SS G_CDS: 3.75 Total: -64.35 kcal Atomic # 7 Polarization: -73.26 SS G_CDS: -0.41 Total: -73.68 kcal Atomic # 8 Polarization: -59.07 SS G_CDS: -4.05 Total: -63.12 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: 69.96 SS G_CDS: -0.31 Total: 69.65 kcal Total: -68.96 1.16 -67.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885010717.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.869 kcal (2) G-P(sol) polarization free energy of solvation -68.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds