Wall clock time and date at job start Tue Mar 31 2020 14:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46959 * 2 1 4 4 C 1.52992 * 109.47533 * 59.99779 * 3 2 1 5 5 C 1.53007 * 109.46918 * 299.99698 * 3 2 1 6 6 C 1.53000 * 109.46959 * 180.02562 * 3 2 1 7 7 N 1.46503 * 109.47132 * 179.97438 * 6 3 2 8 8 S 1.65597 * 119.99916 * 164.99803 * 7 6 3 9 9 O 1.42100 * 106.40221 * 311.46434 * 8 7 6 10 10 O 1.42100 * 106.40331 * 178.54440 * 8 7 6 11 11 C 1.76198 * 107.21897 * 65.00477 * 8 7 6 12 12 C 1.38233 * 120.00076 * 90.00038 * 11 8 7 13 13 C 1.38237 * 120.00111 * 179.97438 * 12 11 8 14 14 C 1.38231 * 119.99929 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99766 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47151 * 90.00279 * 15 14 13 17 17 H 1.08002 * 119.99761 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99694 * 180.27762 * 16 15 14 19 19 N 1.31514 * 120.00482 * 359.71466 * 18 16 15 20 20 Si 1.86801 * 119.99746 * 179.72062 * 18 16 15 21 21 H 1.48504 * 109.47209 * 89.99886 * 20 18 16 22 22 H 1.48501 * 109.47358 * 209.99377 * 20 18 16 23 23 H 1.48496 * 109.47341 * 329.99989 * 20 18 16 24 24 C 1.38233 * 120.00119 * 0.25187 * 14 13 12 25 25 C 1.38231 * 119.99963 * 269.97887 * 11 8 7 26 26 H 1.09003 * 109.47112 * 60.00165 * 1 2 3 27 27 H 1.08996 * 109.46976 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47176 * 300.00395 * 1 2 3 29 29 H 1.09002 * 109.47144 * 240.00161 * 2 1 3 30 30 H 1.08995 * 109.47238 * 119.99568 * 2 1 3 31 31 H 1.08996 * 109.47716 * 179.97438 * 4 3 2 32 32 H 1.08997 * 109.46981 * 300.00471 * 4 3 2 33 33 H 1.09003 * 109.46876 * 59.99958 * 4 3 2 34 34 H 1.08994 * 109.46985 * 300.00045 * 5 3 2 35 35 H 1.08995 * 109.47069 * 60.00731 * 5 3 2 36 36 H 1.09006 * 109.46916 * 180.02562 * 5 3 2 37 37 H 1.09002 * 109.47144 * 60.00161 * 6 3 2 38 38 H 1.08995 * 109.47238 * 299.99568 * 6 3 2 39 39 H 0.96993 * 120.00102 * 345.00526 * 7 6 3 40 40 H 1.08000 * 120.00181 * 359.97438 * 12 11 8 41 41 H 1.08003 * 119.99517 * 179.97438 * 13 12 11 42 42 H 1.09000 * 109.47088 * 329.99418 * 15 14 13 43 43 H 1.09007 * 109.46560 * 209.99923 * 15 14 13 44 44 H 0.96995 * 120.00207 * 179.97438 * 19 18 16 45 45 H 1.08002 * 120.00409 * 179.72430 * 24 14 13 46 46 H 1.08004 * 120.00378 * 359.97438 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1638 1.2491 5 6 1.5300 2.1637 -1.2494 6 6 3.5700 1.4425 -0.0006 7 7 4.0583 2.8238 -0.0013 8 16 5.6405 3.1428 0.3692 9 8 5.9254 2.4262 1.5628 10 8 5.8051 4.5490 0.2489 11 6 6.6290 2.4161 -0.8954 12 6 6.9592 3.1477 -2.0208 13 6 7.7352 2.5778 -3.0127 14 6 8.1806 1.2760 -2.8795 15 6 9.0261 0.6545 -3.9612 16 6 10.4820 0.9154 -3.6729 17 1 10.7666 1.4756 -2.7945 18 6 11.4504 0.4443 -4.5338 19 7 11.1038 -0.2376 -5.6036 20 14 13.2547 0.7744 -4.1806 21 1 13.8068 -0.3280 -3.3527 22 1 14.0032 0.8545 -5.4607 23 1 13.3888 2.0588 -3.4475 24 6 7.8456 0.5424 -1.7568 25 6 7.0748 1.1144 -0.7620 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 1.8936 3.1913 1.2494 32 1 0.4400 2.1638 1.2491 33 1 1.8933 1.6500 2.1391 34 1 1.8933 1.6499 -2.1392 35 1 0.4400 2.1638 -1.2493 36 1 1.8937 3.1913 -1.2496 37 1 3.9329 0.9288 -0.8909 38 1 3.9337 0.9287 0.8891 39 1 3.4549 3.5514 -0.2186 40 1 6.6109 4.1647 -2.1251 41 1 7.9927 3.1494 -3.8922 42 1 8.7623 1.0912 -4.9244 43 1 8.8481 -0.4206 -3.9887 44 1 11.7851 -0.5687 -6.2095 45 1 8.1899 -0.4762 -1.6547 46 1 6.8175 0.5429 0.1176 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885140557.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:32 Heat of formation + Delta-G solvation = -81.126387 kcal Electronic energy + Delta-G solvation = -25573.650749 eV Core-core repulsion = 21975.053892 eV Total energy + Delta-G solvation = -3598.596856 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -38.93168 -38.78347 -37.10124 -35.74487 -34.21254 -33.67781 -31.56049 -30.57593 -30.11876 -27.59698 -27.43397 -26.77447 -23.72784 -23.38036 -22.33521 -20.90245 -19.52813 -18.97549 -17.86743 -17.29748 -16.45985 -16.28052 -15.42298 -15.19667 -15.07899 -14.96669 -14.43898 -14.37093 -14.27348 -13.82225 -13.70877 -13.10686 -12.86964 -12.66438 -12.57227 -12.39873 -12.23419 -12.10423 -12.02781 -11.95913 -11.89737 -11.69977 -11.49175 -11.44456 -10.96564 -10.91646 -10.85800 -10.81636 -10.76728 -10.51994 -10.48575 -9.79064 -9.69137 -9.52419 -8.59122 -8.54348 -8.38658 -6.17796 -4.22803 0.53038 1.33257 1.79413 3.10274 3.23927 3.30511 3.35014 3.77674 4.11933 4.28293 4.37016 4.43499 4.47673 4.58368 4.95455 5.01830 5.09946 5.15877 5.21944 5.23791 5.24266 5.33596 5.36127 5.47682 5.54992 5.63780 5.68217 5.72074 5.73438 5.74592 5.81899 5.83895 5.91052 5.95166 6.10553 6.13411 6.24979 6.33086 6.50786 6.83166 6.84704 6.90836 7.28713 7.42802 7.58458 7.77363 8.12673 8.82025 9.42261 10.92262 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.018844 B = 0.002848 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.491560 B = 9829.384356 C =10624.457464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.115 4.115 3 C -0.070 4.070 4 C -0.145 4.145 5 C -0.146 4.146 6 C 0.125 3.875 7 N -1.118 6.118 8 S 2.698 3.302 9 O -0.965 6.965 10 O -0.968 6.968 11 C -0.703 4.703 12 C -0.022 4.022 13 C -0.146 4.146 14 C 0.026 3.974 15 C 0.039 3.961 16 C -0.517 4.517 17 H 0.059 0.941 18 C 0.061 3.939 19 N -0.892 5.892 20 Si 0.898 3.102 21 H -0.278 1.278 22 H -0.285 1.285 23 H -0.272 1.272 24 C -0.146 4.146 25 C -0.025 4.025 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.415 0.585 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.035 0.965 43 H 0.034 0.966 44 H 0.264 0.736 45 H 0.128 0.872 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.575 2.528 9.936 23.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.153 4.153 3 C -0.072 4.072 4 C -0.203 4.203 5 C -0.204 4.204 6 C -0.001 4.001 7 N -0.878 5.878 8 S 2.791 3.209 9 O -0.955 6.955 10 O -0.958 6.958 11 C -0.793 4.793 12 C -0.041 4.041 13 C -0.165 4.165 14 C 0.026 3.974 15 C 0.003 3.997 16 C -0.555 4.555 17 H 0.077 0.923 18 C -0.141 4.141 19 N -0.530 5.530 20 Si 0.726 3.274 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.165 4.165 25 C -0.044 4.044 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.250 0.750 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.074 0.926 45 H 0.146 0.854 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -21.086 2.756 10.564 23.745 hybrid contribution 1.051 0.026 -0.741 1.286 sum -20.035 2.782 9.822 22.486 Atomic orbital electron populations 1.21874 0.95651 1.01599 1.02076 1.21544 0.96215 0.94958 1.02584 1.20738 0.93593 0.96346 0.96479 1.21939 1.01002 1.00478 0.96843 1.21954 1.01233 1.00236 0.96934 1.21388 0.94637 0.81626 1.02469 1.55590 1.28844 1.14582 1.88797 1.01531 0.72232 0.73132 0.74033 1.93553 1.83820 1.74578 1.43540 1.93564 1.85268 1.29714 1.87262 1.30319 1.23596 1.06989 1.18362 1.20765 0.94125 0.98040 0.91192 1.21245 0.99568 0.95864 0.99804 1.21111 0.88262 0.92859 0.95158 1.18538 0.93364 0.96476 0.91355 1.20970 0.89571 1.35708 1.09290 0.92292 1.25000 0.99447 0.94834 0.94851 1.69943 1.33892 1.36305 1.12864 0.86481 0.84268 0.78911 0.77765 1.20433 1.21021 1.19696 1.21244 0.99920 1.01010 0.94283 1.20782 0.93875 0.92271 0.97494 0.92396 0.92840 0.92421 0.91461 0.91523 0.92466 0.92174 0.92269 0.92133 0.92040 0.92567 0.91317 0.90127 0.74979 0.85305 0.85385 0.94730 0.94731 0.92624 0.85368 0.85296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.21 37.16 0.34 -0.54 16 2 C -0.11 -0.75 4.99 -26.73 -0.13 -0.88 16 3 C -0.07 -0.49 0.57 -154.51 -0.09 -0.58 16 4 C -0.15 -1.00 7.96 37.15 0.30 -0.70 16 5 C -0.15 -0.97 7.95 37.16 0.30 -0.68 16 6 C 0.13 1.10 5.11 -4.04 -0.02 1.08 16 7 N -1.12 -10.92 5.33 -10.61 -0.06 -10.98 16 8 S 2.70 36.96 5.74 -107.50 -0.62 36.35 16 9 O -0.96 -15.44 16.75 -57.17 -0.96 -16.39 16 10 O -0.97 -15.57 17.28 -57.17 -0.99 -16.56 16 11 C -0.70 -10.98 5.95 -39.59 -0.24 -11.21 16 12 C -0.02 -0.36 9.52 -39.58 -0.38 -0.73 16 13 C -0.15 -2.71 9.70 -39.58 -0.38 -3.10 16 14 C 0.03 0.55 5.07 -104.62 -0.53 0.01 16 15 C 0.04 0.96 5.10 -29.03 -0.15 0.81 16 16 C -0.52 -14.04 9.09 -34.44 -0.31 -14.35 16 17 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -25.52 13.29 55.43 0.74 -24.79 16 20 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 24 C -0.15 -2.68 9.70 -39.58 -0.38 -3.06 16 25 C -0.02 -0.40 9.52 -39.58 -0.38 -0.77 16 26 H 0.06 0.32 6.43 -51.93 -0.33 -0.01 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.31 6.43 -51.93 -0.33 -0.02 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.40 7.20 -51.93 -0.37 0.02 16 32 H 0.06 0.35 6.43 -51.93 -0.33 0.02 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.36 6.43 -51.93 -0.33 0.03 16 36 H 0.06 0.36 6.60 -51.93 -0.34 0.02 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.72 7.75 -51.93 -0.40 0.32 16 39 H 0.41 3.29 6.47 -34.46 -0.22 3.06 16 40 H 0.13 1.82 7.62 -52.49 -0.40 1.42 16 41 H 0.13 2.26 8.06 -52.48 -0.42 1.84 16 42 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 43 H 0.03 0.88 8.08 -51.93 -0.42 0.46 16 44 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.13 2.23 8.06 -52.49 -0.42 1.81 16 46 H 0.13 1.77 7.62 -52.48 -0.40 1.37 16 LS Contribution 380.30 15.07 5.73 5.73 Total: -1.00 -32.45 380.30 -10.57 -43.02 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -7.24 Total: 0.62 kcal Atomic # 6 Polarization: -30.97 SS G_CDS: -2.15 Total: -33.13 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: 0.68 Total: -35.76 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -1.95 Total: -32.95 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 36.96 SS G_CDS: -0.62 Total: 36.35 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.45 -10.57 -43.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885140557.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.111 kcal (2) G-P(sol) polarization free energy of solvation -32.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds