Wall clock time and date at job start Tue Mar 31 2020 14:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46959 * 2 1 4 4 C 1.52992 * 109.47533 * 59.99779 * 3 2 1 5 5 C 1.53007 * 109.46918 * 299.99698 * 3 2 1 6 6 C 1.53000 * 109.46959 * 180.02562 * 3 2 1 7 7 N 1.46503 * 109.47132 * 179.97438 * 6 3 2 8 8 S 1.65597 * 119.99916 * 164.99803 * 7 6 3 9 9 O 1.42100 * 106.40221 * 311.46434 * 8 7 6 10 10 O 1.42100 * 106.40331 * 178.54440 * 8 7 6 11 11 C 1.76198 * 107.21897 * 65.00477 * 8 7 6 12 12 C 1.38233 * 120.00076 * 90.00038 * 11 8 7 13 13 C 1.38237 * 120.00111 * 179.97438 * 12 11 8 14 14 C 1.38231 * 119.99929 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99766 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47151 * 90.00279 * 15 14 13 17 17 H 1.08002 * 119.99761 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99694 * 180.27762 * 16 15 14 19 19 N 1.31514 * 120.00482 * 359.71466 * 18 16 15 20 20 Si 1.86801 * 119.99746 * 179.72062 * 18 16 15 21 21 H 1.48504 * 109.47209 * 89.99886 * 20 18 16 22 22 H 1.48501 * 109.47358 * 209.99377 * 20 18 16 23 23 H 1.48496 * 109.47341 * 329.99989 * 20 18 16 24 24 C 1.38233 * 120.00119 * 0.25187 * 14 13 12 25 25 C 1.38231 * 119.99963 * 269.97887 * 11 8 7 26 26 H 1.09003 * 109.47112 * 60.00165 * 1 2 3 27 27 H 1.08996 * 109.46976 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47176 * 300.00395 * 1 2 3 29 29 H 1.09002 * 109.47144 * 240.00161 * 2 1 3 30 30 H 1.08995 * 109.47238 * 119.99568 * 2 1 3 31 31 H 1.08996 * 109.47716 * 179.97438 * 4 3 2 32 32 H 1.08997 * 109.46981 * 300.00471 * 4 3 2 33 33 H 1.09003 * 109.46876 * 59.99958 * 4 3 2 34 34 H 1.08994 * 109.46985 * 300.00045 * 5 3 2 35 35 H 1.08995 * 109.47069 * 60.00731 * 5 3 2 36 36 H 1.09006 * 109.46916 * 180.02562 * 5 3 2 37 37 H 1.09002 * 109.47144 * 60.00161 * 6 3 2 38 38 H 1.08995 * 109.47238 * 299.99568 * 6 3 2 39 39 H 0.96993 * 120.00102 * 345.00526 * 7 6 3 40 40 H 1.08000 * 120.00181 * 359.97438 * 12 11 8 41 41 H 1.08003 * 119.99517 * 179.97438 * 13 12 11 42 42 H 1.09000 * 109.47088 * 329.99418 * 15 14 13 43 43 H 1.09007 * 109.46560 * 209.99923 * 15 14 13 44 44 H 0.96995 * 120.00207 * 179.97438 * 19 18 16 45 45 H 1.08002 * 120.00409 * 179.72430 * 24 14 13 46 46 H 1.08004 * 120.00378 * 359.97438 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1638 1.2491 5 6 1.5300 2.1637 -1.2494 6 6 3.5700 1.4425 -0.0006 7 7 4.0583 2.8238 -0.0013 8 16 5.6405 3.1428 0.3692 9 8 5.9254 2.4262 1.5628 10 8 5.8051 4.5490 0.2489 11 6 6.6290 2.4161 -0.8954 12 6 6.9592 3.1477 -2.0208 13 6 7.7352 2.5778 -3.0127 14 6 8.1806 1.2760 -2.8795 15 6 9.0261 0.6545 -3.9612 16 6 10.4820 0.9154 -3.6729 17 1 10.7666 1.4756 -2.7945 18 6 11.4504 0.4443 -4.5338 19 7 11.1038 -0.2376 -5.6036 20 14 13.2547 0.7744 -4.1806 21 1 13.8068 -0.3280 -3.3527 22 1 14.0032 0.8545 -5.4607 23 1 13.3888 2.0588 -3.4475 24 6 7.8456 0.5424 -1.7568 25 6 7.0748 1.1144 -0.7620 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 1.8936 3.1913 1.2494 32 1 0.4400 2.1638 1.2491 33 1 1.8933 1.6500 2.1391 34 1 1.8933 1.6499 -2.1392 35 1 0.4400 2.1638 -1.2493 36 1 1.8937 3.1913 -1.2496 37 1 3.9329 0.9288 -0.8909 38 1 3.9337 0.9287 0.8891 39 1 3.4549 3.5514 -0.2186 40 1 6.6109 4.1647 -2.1251 41 1 7.9927 3.1494 -3.8922 42 1 8.7623 1.0912 -4.9244 43 1 8.8481 -0.4206 -3.9887 44 1 11.7851 -0.5687 -6.2095 45 1 8.1899 -0.4762 -1.6547 46 1 6.8175 0.5429 0.1176 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885140557.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:31 Heat of formation + Delta-G solvation = -100.824437 kcal Electronic energy + Delta-G solvation = -25574.504920 eV Core-core repulsion = 21975.053892 eV Total energy + Delta-G solvation = -3599.451028 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.23236 -39.51774 -38.30705 -36.96218 -35.60460 -34.95210 -33.31845 -31.95751 -30.65806 -29.24788 -28.10769 -27.42554 -25.59367 -23.97879 -23.69056 -22.47212 -20.57932 -19.63839 -19.00647 -18.59282 -18.34493 -17.27678 -16.86510 -16.39773 -16.02758 -15.92486 -15.67695 -15.46771 -15.24654 -14.90585 -14.62473 -14.45780 -14.32514 -13.92977 -13.44013 -13.41482 -13.37009 -13.28472 -13.17199 -13.13318 -12.91985 -12.69407 -12.67530 -12.63783 -12.59240 -12.14284 -12.03792 -11.95197 -11.68203 -11.44721 -11.42264 -11.33040 -11.30010 -10.66034 -10.43523 -9.95912 -9.94742 -8.27823 -6.40557 -0.60675 -0.05820 0.40057 1.37831 1.38136 1.49628 2.04377 2.34381 2.57070 2.83608 3.04850 3.32137 3.74483 3.86560 3.92519 3.95306 3.98235 4.16078 4.39229 4.46764 4.47700 4.48142 4.51333 4.69412 4.78748 4.81870 4.83718 4.91313 4.92062 4.93746 5.11021 5.12425 5.17581 5.22471 5.24706 5.25372 5.25566 5.33641 5.34839 5.38715 5.59519 5.64814 5.66492 5.86335 5.92550 6.09495 6.10835 6.71285 7.28608 8.82287 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.018844 B = 0.002848 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.491560 B = 9829.384356 C =10624.457464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.065 4.065 4 C -0.148 4.148 5 C -0.148 4.148 6 C 0.115 3.885 7 N -1.101 6.101 8 S 2.726 3.274 9 O -0.983 6.983 10 O -0.987 6.987 11 C -0.700 4.700 12 C -0.019 4.019 13 C -0.156 4.156 14 C -0.003 4.003 15 C 0.048 3.952 16 C -0.534 4.534 17 H 0.053 0.947 18 C 0.010 3.990 19 N -0.925 5.925 20 Si 0.963 3.037 21 H -0.271 1.271 22 H -0.278 1.278 23 H -0.268 1.268 24 C -0.154 4.154 25 C -0.019 4.019 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.426 0.574 40 H 0.154 0.846 41 H 0.128 0.872 42 H 0.013 0.987 43 H 0.014 0.986 44 H 0.267 0.733 45 H 0.130 0.870 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.748 3.306 11.479 25.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.067 4.067 4 C -0.205 4.205 5 C -0.206 4.206 6 C -0.011 4.011 7 N -0.865 5.865 8 S 2.816 3.184 9 O -0.973 6.973 10 O -0.977 6.977 11 C -0.787 4.787 12 C -0.038 4.038 13 C -0.175 4.175 14 C -0.004 4.004 15 C 0.012 3.988 16 C -0.572 4.572 17 H 0.071 0.929 18 C -0.189 4.189 19 N -0.565 5.565 20 Si 0.788 3.212 21 H -0.196 1.196 22 H -0.203 1.203 23 H -0.193 1.193 24 C -0.173 4.173 25 C -0.038 4.038 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.265 0.735 40 H 0.172 0.828 41 H 0.146 0.854 42 H 0.031 0.969 43 H 0.032 0.968 44 H 0.076 0.924 45 H 0.148 0.852 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -22.254 3.534 12.092 25.572 hybrid contribution 1.268 -0.209 -1.163 1.733 sum -20.986 3.325 10.929 23.894 Atomic orbital electron populations 1.21863 0.94949 1.01863 1.02371 1.21556 0.96819 0.94504 1.02518 1.20707 0.92178 0.96876 0.96897 1.21971 1.01797 1.00285 0.96445 1.21982 1.01929 1.00237 0.96410 1.21620 0.96031 0.80692 1.02713 1.55237 1.27186 1.15688 1.88369 1.00725 0.72566 0.72050 0.73044 1.93534 1.84615 1.74909 1.44199 1.93536 1.85983 1.30907 1.87320 1.30791 1.22912 1.06639 1.18315 1.21013 0.93094 0.99123 0.90569 1.21300 1.00207 0.95236 1.00747 1.20812 0.90046 0.94190 0.95310 1.18262 0.93307 0.95297 0.91981 1.21289 0.91314 1.35486 1.09074 0.92856 1.25855 1.03906 0.94542 0.94607 1.70049 1.35379 1.37254 1.13782 0.85468 0.78966 0.78924 0.77861 1.19617 1.20289 1.19290 1.21306 1.00511 1.01193 0.94288 1.21040 0.92617 0.92659 0.97506 0.92168 0.92660 0.92022 0.91705 0.91487 0.92509 0.91067 0.92639 0.92629 0.91080 0.92243 0.91033 0.90054 0.73539 0.82793 0.85369 0.96900 0.96789 0.92359 0.85186 0.82606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.21 71.98 0.66 -0.78 16 2 C -0.12 -1.29 4.99 30.59 0.15 -1.13 16 3 C -0.06 -0.77 0.57 -52.18 -0.03 -0.80 16 4 C -0.15 -1.68 7.96 71.98 0.57 -1.11 16 5 C -0.15 -1.64 7.95 71.98 0.57 -1.06 16 6 C 0.12 1.77 5.11 86.38 0.44 2.21 16 7 N -1.10 -18.75 5.33 -187.49 -1.00 -19.75 16 8 S 2.73 68.24 5.74 -56.49 -0.32 67.92 16 9 O -0.98 -29.07 16.75 -128.00 -2.14 -31.22 16 10 O -0.99 -29.38 17.28 -128.00 -2.21 -31.59 16 11 C -0.70 -20.53 5.95 22.27 0.13 -20.40 16 12 C -0.02 -0.59 9.52 22.27 0.21 -0.38 16 13 C -0.16 -5.83 9.70 22.27 0.22 -5.61 16 14 C 0.00 -0.14 5.07 -19.87 -0.10 -0.24 16 15 C 0.05 2.48 5.10 29.10 0.15 2.63 16 16 C -0.53 -29.78 9.09 25.60 0.23 -29.55 16 17 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 18 C 0.01 0.55 5.46 84.65 0.46 1.02 16 19 N -0.93 -54.23 13.29 21.45 0.28 -53.94 16 20 Si 0.96 43.67 29.54 68.60 2.03 45.70 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 22 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 24 C -0.15 -5.68 9.70 22.27 0.22 -5.46 16 25 C -0.02 -0.59 9.52 22.27 0.21 -0.37 16 26 H 0.06 0.54 6.43 -2.39 -0.02 0.53 16 27 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.06 0.53 6.43 -2.39 -0.02 0.52 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.65 7.20 -2.39 -0.02 0.63 16 32 H 0.07 0.65 6.43 -2.39 -0.02 0.64 16 33 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.07 0.66 6.43 -2.39 -0.02 0.64 16 36 H 0.06 0.61 6.60 -2.38 -0.02 0.59 16 37 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.08 1.28 7.75 -2.39 -0.02 1.26 16 39 H 0.43 5.58 6.47 -96.76 -0.63 4.95 16 40 H 0.15 3.99 7.62 -2.91 -0.02 3.97 16 41 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 42 H 0.01 0.69 8.09 -2.39 -0.02 0.67 16 43 H 0.01 0.75 8.08 -2.38 -0.02 0.73 16 44 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 45 H 0.13 4.61 8.06 -2.91 -0.02 4.58 16 46 H 0.16 3.89 7.62 -2.91 -0.02 3.87 16 Total: -1.00 -69.47 380.30 1.08 -68.39 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.34 Total: 15.54 kcal Atomic # 6 Polarization: -65.15 SS G_CDS: 4.10 Total: -61.05 kcal Atomic # 7 Polarization: -72.98 SS G_CDS: -0.71 Total: -73.69 kcal Atomic # 8 Polarization: -58.45 SS G_CDS: -4.36 Total: -62.81 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: 68.24 SS G_CDS: -0.32 Total: 67.92 kcal Total: -69.47 1.08 -68.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885140557.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.435 kcal (2) G-P(sol) polarization free energy of solvation -69.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds