Wall clock time and date at job start Tue Mar 31 2020 14:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47820 * 2 1 4 4 C 1.52997 * 109.47394 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47222 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47222 * 179.97438 * 5 4 3 7 7 N 1.46493 * 109.47377 * 180.02562 * 6 5 4 8 8 C 1.46505 * 119.99899 * 90.00269 * 7 6 5 9 9 C 1.50703 * 109.47064 * 270.00279 * 8 7 6 10 10 C 1.34515 * 125.79060 * 89.99944 * 9 8 7 11 11 C 1.41380 * 106.83832 * 179.97438 * 10 9 8 12 12 C 1.34506 * 106.84493 * 359.97438 * 11 10 9 13 13 O 1.34306 * 125.78568 * 269.69282 * 9 8 7 14 14 C 1.34773 * 120.00646 * 270.00434 * 7 6 5 15 15 O 1.21287 * 119.99667 * 359.97438 * 14 7 6 16 16 C 1.50702 * 120.00755 * 179.97438 * 14 7 6 17 17 S 1.80996 * 109.47335 * 180.02562 * 16 14 7 18 18 C 1.76203 * 99.99911 * 179.97438 * 17 16 14 19 19 H 1.08000 * 119.99861 * 359.97438 * 18 17 16 20 20 C 1.38800 * 119.99867 * 180.02562 * 18 17 16 21 21 N 1.31630 * 120.00067 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99827 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47305 * 359.97438 * 22 20 18 24 24 H 1.48507 * 109.47273 * 119.99663 * 22 20 18 25 25 H 1.48498 * 109.47164 * 239.99550 * 22 20 18 26 26 H 1.09006 * 109.46786 * 300.00130 * 1 2 3 27 27 H 1.09004 * 109.46762 * 59.99226 * 1 2 3 28 28 H 1.08993 * 109.47529 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46957 * 239.99352 * 2 1 3 30 30 H 1.09004 * 109.46762 * 120.00773 * 2 1 3 31 31 H 1.09006 * 109.47047 * 60.00030 * 3 2 1 32 32 H 1.08996 * 109.47017 * 300.00528 * 3 2 1 33 33 H 1.09006 * 109.46817 * 60.00112 * 4 3 2 34 34 H 1.08994 * 109.47199 * 300.00626 * 4 3 2 35 35 H 1.09006 * 109.46906 * 60.00445 * 5 4 3 36 36 H 1.08996 * 109.47330 * 300.00837 * 5 4 3 37 37 H 1.09006 * 109.46817 * 60.00390 * 6 5 4 38 38 H 1.08996 * 109.47652 * 300.00640 * 6 5 4 39 39 H 1.09002 * 109.47068 * 30.00248 * 8 7 6 40 40 H 1.09001 * 109.47372 * 150.00336 * 8 7 6 41 41 H 1.07996 * 126.58016 * 0.03378 * 10 9 8 42 42 H 1.08006 * 126.57610 * 179.97438 * 11 10 9 43 43 H 1.08005 * 125.79499 * 180.02562 * 12 11 10 44 44 H 1.09004 * 109.46469 * 300.00239 * 16 14 7 45 45 H 1.09002 * 109.46873 * 59.99721 * 16 14 7 46 46 H 0.96996 * 120.00116 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 3.5701 1.4423 0.0006 5 6 4.0803 2.8847 0.0000 6 6 5.6102 2.8846 0.0013 7 7 6.0987 4.2657 0.0013 8 6 6.3420 4.9566 1.2701 9 6 5.0858 5.6672 1.7039 10 6 4.1146 5.1474 2.4760 11 6 3.1331 6.1530 2.6318 12 6 3.5634 7.2273 1.9463 13 8 4.7489 6.9289 1.3901 14 6 6.3244 4.9008 -1.1658 15 8 6.1234 4.3287 -2.2162 16 6 6.8263 6.3217 -1.1658 17 16 7.0282 6.8903 -2.8723 18 6 7.6062 8.5294 -2.5823 19 1 7.7311 8.8869 -1.5708 20 6 7.9000 9.3614 -3.6537 21 7 7.7473 8.9258 -4.8864 22 14 8.5135 11.0988 -3.3463 23 1 8.5987 11.3421 -1.8838 24 1 9.8578 11.2642 -3.9552 25 1 7.5711 12.0715 -3.9554 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5140 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5140 -0.8900 30 1 1.8933 -0.5140 0.8900 31 1 1.6769 1.9563 0.8900 32 1 1.6768 1.9562 -0.8899 33 1 3.9338 0.9282 -0.8892 34 1 3.9331 0.9285 0.8908 35 1 3.7166 3.3991 0.8896 36 1 3.7173 3.3981 -0.8903 37 1 5.9743 2.3701 -0.8881 38 1 5.9729 2.3713 0.8918 39 1 6.6294 4.2301 2.0301 40 1 7.1440 5.6832 1.1402 41 1 4.0899 4.1532 2.8968 42 1 2.2141 6.0738 3.1936 43 1 3.0454 8.1711 1.8607 44 1 6.1076 6.9609 -0.6529 45 1 7.7860 6.3680 -0.6510 46 1 7.9530 9.5071 -5.6352 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890936650.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:58 Heat of formation + Delta-G solvation = -45.044244 kcal Electronic energy + Delta-G solvation = -25363.414695 eV Core-core repulsion = 21766.382478 eV Total energy + Delta-G solvation = -3597.032217 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.57809 -39.55206 -36.71014 -35.58329 -33.03651 -32.99102 -32.40303 -30.47195 -29.69332 -27.71120 -25.84296 -25.46682 -23.92100 -21.78874 -21.45794 -21.12323 -20.79615 -19.17163 -17.82566 -17.40040 -16.66252 -16.20756 -15.98523 -15.55347 -15.31171 -14.78232 -14.38578 -14.30141 -14.13446 -13.94056 -13.51509 -13.21773 -13.00095 -12.87889 -12.77222 -12.67070 -12.60334 -12.50285 -11.94322 -11.85624 -11.64179 -11.49707 -11.10350 -11.05516 -10.99046 -10.87288 -10.84085 -10.72036 -10.57891 -9.88171 -9.77248 -9.37121 -9.04974 -8.76396 -8.46838 -8.19174 -6.46959 -6.19292 -3.89152 1.64212 2.51551 2.88642 3.03970 3.14375 3.22894 3.28470 3.33177 3.63670 4.22445 4.54745 4.62216 4.70085 4.77419 4.86624 4.87690 4.96708 5.06092 5.09695 5.15895 5.18773 5.24797 5.28923 5.31732 5.52743 5.55839 5.60102 5.65899 5.71228 5.74100 5.77039 5.81959 5.84556 5.91379 5.94906 5.99955 6.04891 6.13120 6.22655 6.25756 6.32385 6.44103 6.63450 7.13606 7.46310 7.62987 8.38568 8.53555 9.26269 10.88289 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013628 B = 0.003085 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.058289 B = 9073.029239 C =10140.419904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.119 4.119 4 C -0.115 4.115 5 C -0.141 4.141 6 C 0.118 3.882 7 N -0.617 5.617 8 C 0.189 3.811 9 C -0.030 4.030 10 C -0.197 4.197 11 C -0.221 4.221 12 C -0.031 4.031 13 O -0.165 6.165 14 C 0.536 3.464 15 O -0.509 6.509 16 C -0.153 4.153 17 S -0.062 6.062 18 C -0.531 4.531 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.918 3.082 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.280 1.280 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.109 0.891 40 H 0.100 0.900 41 H 0.145 0.855 42 H 0.145 0.855 43 H 0.200 0.800 44 H 0.094 0.906 45 H 0.088 0.912 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.873 -13.222 17.957 24.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.157 4.157 4 C -0.153 4.153 5 C -0.180 4.180 6 C -0.005 4.005 7 N -0.352 5.352 8 C 0.065 3.935 9 C -0.082 4.082 10 C -0.217 4.217 11 C -0.240 4.240 12 C -0.100 4.100 13 O -0.059 6.059 14 C 0.324 3.676 15 O -0.382 6.382 16 C -0.303 4.303 17 S 0.164 5.836 18 C -0.679 4.679 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.504 5.504 22 Si 0.744 3.256 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.127 0.873 40 H 0.118 0.882 41 H 0.163 0.837 42 H 0.163 0.837 43 H 0.217 0.783 44 H 0.113 0.887 45 H 0.106 0.894 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.944 -13.852 15.992 23.378 hybrid contribution 0.201 1.827 1.640 2.463 sum -9.743 -12.025 17.633 23.461 Atomic orbital electron populations 1.21783 0.96086 1.01380 1.01828 1.21539 0.95711 0.97127 1.01860 1.21601 0.95472 0.96466 1.02146 1.21511 0.95382 0.96527 1.01896 1.22084 0.95661 0.96967 1.03281 1.21482 0.93991 0.82105 1.02906 1.48071 1.67870 1.13951 1.05274 1.19935 0.91136 0.95717 0.86667 1.23006 1.00140 0.83714 1.01373 1.21503 0.95161 1.00884 1.04136 1.21773 1.02120 0.94133 1.05979 1.24108 0.86091 1.01124 0.98673 1.84126 1.33613 1.28837 1.59360 1.20401 0.76398 0.88001 0.82764 1.90697 1.49996 1.67108 1.30411 1.23610 1.03532 0.94826 1.08381 1.85356 1.86472 1.14360 0.97366 1.22890 1.51026 0.98513 0.95486 0.90900 1.24989 0.95185 0.99019 0.94442 1.70029 1.45809 1.36499 0.98032 0.86129 0.78452 0.82539 0.78456 1.19601 1.20576 1.20602 0.92870 0.92718 0.92960 0.92049 0.92235 0.92188 0.91944 0.91832 0.92197 0.91226 0.91471 0.89681 0.90939 0.87266 0.88206 0.83717 0.83709 0.78280 0.88743 0.89359 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.76 16 2 C -0.12 -0.98 5.93 -26.73 -0.16 -1.14 16 3 C -0.12 -1.07 5.21 -26.74 -0.14 -1.21 16 4 C -0.12 -1.07 5.21 -26.73 -0.14 -1.21 16 5 C -0.14 -1.63 5.54 -26.73 -0.15 -1.78 16 6 C 0.12 1.39 5.45 -4.05 -0.02 1.37 16 7 N -0.62 -8.73 2.46 -175.06 -0.43 -9.16 16 8 C 0.19 2.12 5.78 -5.19 -0.03 2.09 16 9 C -0.03 -0.38 6.73 -35.62 -0.24 -0.62 16 10 C -0.20 -2.12 8.87 -39.70 -0.35 -2.47 16 11 C -0.22 -2.34 10.91 -39.71 -0.43 -2.78 16 12 C -0.03 -0.37 12.09 29.41 0.36 -0.01 16 13 O -0.16 -2.38 9.55 5.68 0.05 -2.32 16 14 C 0.54 10.40 7.69 -10.99 -0.08 10.31 16 15 O -0.51 -11.74 15.44 5.55 0.09 -11.65 16 16 C -0.15 -3.23 4.71 36.01 0.17 -3.06 16 17 S -0.06 -1.72 20.57 -107.50 -2.21 -3.93 16 18 C -0.53 -15.32 9.50 30.94 0.29 -15.03 16 19 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.42 13.22 55.49 0.73 -25.69 16 22 Si 0.92 21.64 29.55 -169.99 -5.02 16.61 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.77 5.60 -51.93 -0.29 0.48 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.08 1.15 7.42 -51.93 -0.39 0.77 16 38 H 0.07 0.62 7.89 -51.93 -0.41 0.21 16 39 H 0.11 0.82 7.89 -51.93 -0.41 0.41 16 40 H 0.10 1.13 6.44 -51.93 -0.33 0.80 16 41 H 0.15 1.25 7.81 -52.49 -0.41 0.84 16 42 H 0.15 1.20 8.06 -52.48 -0.42 0.78 16 43 H 0.20 1.70 8.06 -52.48 -0.42 1.28 16 44 H 0.09 1.96 6.93 -51.91 -0.36 1.60 16 45 H 0.09 1.70 7.40 -51.92 -0.38 1.32 16 46 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 392.19 15.07 5.91 5.91 Total: -1.00 -34.99 392.19 -9.14 -44.13 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -7.60 Total: 0.37 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: -0.66 Total: -14.27 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: 0.30 Total: -34.85 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: 0.14 Total: -13.98 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.99 -9.14 -44.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890936650.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.915 kcal (2) G-P(sol) polarization free energy of solvation -34.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds